Rmu_co8429665.1_g000001

Phosphoinositide phospholipase C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8429665.1
OG0012680
Physical Location & Seq
Reverse (-)
980 .. 1306
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8429665.1_g000001.1.cds

Sequence Viewer

Length: 327 bp
atgggtttatggcaggtttatattgttggtgtgccttcagactgtgccaagtacaaaacagaaataaaaaacgacgaatggatacctgtttgggatgaagagtttacattcggtatgaccgttccagagctcgctatacttcggattgaagttcgagagtatgacaggtctgataaagatgactttggtggccagacgtgtttgccggtctcggagctaagaaccgggttccggtcagtcgcactttacgatcataagggtgagaaatacacatctgtaaggctcctaatgcggtttcaatttgagtcaaatctcgcacctgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

108

Amino Acids

12.55

Weight (kDa)

4.84

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AciI CCGC 1 cut(s) 292
AcoI YGGCCR 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 231
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 2 cut(s) 149, 299
AjiI CACGTC 1 cut(s) 198
AluBI AGCT 2 cut(s) 130, 217
AluI AGCT 2 cut(s) 130, 217
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 214
AoxI GGCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 272
BalI TGGCCA 1 cut(s) 192
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BciVI GTATCC 1 cut(s) 75
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 325
BfuAI ACCTGC 1 cut(s) 4
BfuI GTATCC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 230, 284
BmrFI CCNGG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 205
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 231
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 3 cut(s) 206, 225, 232
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 250
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 230, 284
BspMI ACCTGC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssMI GATC 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 44, 121
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 224
BsuI GTATCC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 192
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 205
Csp6I GTAC 1 cut(s) 52
CviJI RGCY 4 cut(s) 130, 192, 217, 283
CviKI_1 RGCY 4 cut(s) 130, 192, 217, 283
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 132
FaiI YATR 6 cut(s) 10, 21, 116, 137, 162, 255
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 132
FspBI CTAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 192
HapII CCGG 3 cut(s) 206, 225, 232
HinfI GANTC 1 cut(s) 305
HpaII CCGG 3 cut(s) 206, 225, 232
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 4 cut(s) 40, 144, 172, 214
Hpy188III TCNNGA 2 cut(s) 125, 155
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 2 cut(s) 44, 121
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 197
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 214, 288
LpnPI CCDG 7 cut(s) 99, 138, 151, 206, 219, 238, 245
MaeI CTAG 1 cut(s) 325
MaeII ACGT 1 cut(s) 197
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 314
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 3 cut(s) 206, 225, 232
MspR9I CCNGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 226
NdeII GATC 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 230, 284
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 246
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 230, 284
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 258
SacI GAGCTC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 132
SetI ASST 7 cut(s) 18, 88, 132, 170, 200, 219, 322
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 1 cut(s) 299
SsiI CCGC 1 cut(s) 292
SspMI CTAG 1 cut(s) 325
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 44, 121
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 154
TasI AATT 1 cut(s) 299
TatI WGTACW 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 111
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.