RchiOBHm_Chr1g0372231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015947
Physical Location & Seq
Forward (+)
60993675 .. 60994702
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGGCGTCGTCGCTGGGCATTCACTGCGGAGGCACCCGATATGTCGGTCGTCAAGATCAGAATAATCTGTGCAGTTCTTCTGACTACGCTCGGCGGTGTTCTTGTTCCGTCGCGATGCCGGCTCCGAGGAATCGCGGCAGGGGCACAATCGTAAATTCGTCTAGTGTGGCGGTGGCGGAAACGAAGAGGAGCGTGGGGCGGGAAAGGAGCGGGAGCGAGAAGGTGGACGAGTGGATGAGGGATTCGGTGACGGAGATCGTCAAGAACCTAAGGGAGGCGCCGCTGCTGGTCCACGTGTACGATGGGAAAGAGAAGCGGAGGATGGAGACGGAGAAGAAAGTGGAGGAGGAGAATTGGGACGCGCTGAAGGGGAAGTGGGAGGCCGGAGAGGCGCCGTTGCCGGAAGGCGTTATATTCGTGGAGGAGCTGATGGACGACGGCGAAGTTGACGGCACAGAAGATTCCGTCATCGATGGGATAACGCGAGCGTGGGGGCTGGTGGTGCAGGGGAAGGGGGAGGAGAGTGGGCCAGCTTGTTATTTGTTGAAGACGAGTAGAGTTAATGTCGGGTCGGGTTATGGGCTGGGGGTGGGGATGGGCTGCACTCATTTCTGTTTGGTCCGAGTCAAGAGTTTTAGGGAGACGGCCCAGTCGCAGCTCAAGAATAGTTGGTTGTTGCAGGCACAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.27

Weight (kDa)

6.03

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7804 PF25089 72 - 148 8e-32 Domain of unknown function (DUF7804)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56360 AT5G05250
fragaria_vesca FvH4_7g25910
malus_domestica MD01G1167600.v1.1 MD07G1233600.v1.1
prunus_persica Prupe.2G264000_v2.0.a1
pyrus_communis pycom01g18060 pycom07g21140
rosa_chinensis RchiOBHm_Chr1g0372231
rosa_rugosa Rorug01G0370600
rosa_samantha Rh1AG378900 Rh1BG342400 Rh1CG356000 Rh1DG373600
rosa_wichuraiana Rw1G033340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 649
AccB1I GGYRCC 3 cut(s) 32, 277, 391
AccBSI CCGCTC 1 cut(s) 210
AccII CGCG 4 cut(s) 113, 135, 362, 484
AciI CCGC 9 cut(s) 27, 94, 135, 170, 176, 199, 210, 281, 316
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 386
AcvI CACGTG 1 cut(s) 295
AcyI GRCGYC 3 cut(s) 5, 278, 392
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 1 cut(s) 547
AluBI AGCT 3 cut(s) 427, 533, 658
AluI AGCT 3 cut(s) 427, 533, 658
Alw26I GTCTC 2 cut(s) 320, 635
AoxI GGCC 3 cut(s) 381, 527, 645
ApeKI GCWGC 3 cut(s) 283, 600, 655
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 3 cut(s) 280, 364, 394
AspS9I GGNCC 4 cut(s) 289, 527, 619, 646
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 2 cut(s) 289, 619
AxyI CCTNAGG 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 3 cut(s) 32, 277, 391
BbrPI CACGTG 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 270, 587, 667
BccI CCATC 5 cut(s) 296, 316, 424, 467, 589
BceAI ACGGC 4 cut(s) 379, 454, 466, 660
BcoDI GTCTC 2 cut(s) 320, 635
BfaI CTAG 1 cut(s) 162
BfoI RGCGCY 2 cut(s) 281, 395
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 5 cut(s) 136, 281, 284, 601, 656
BlsI GCNGC 5 cut(s) 137, 282, 285, 602, 657
Bme18I GGWCC 2 cut(s) 289, 619
BmgT120I GGNCC 4 cut(s) 289, 527, 619, 646
BmiI GGNNCC 4 cut(s) 34, 123, 279, 393
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 644
Bsa29I ATCGAT 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 295
BsaHI GRCGYC 3 cut(s) 5, 278, 392
BsaJI CCNNGG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 649
Bse21I CCTNAGG 1 cut(s) 269
BseCI ATCGAT 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 3 cut(s) 240, 327, 600
BseLI CCNNNNNNNGG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 649
BseRI GAGGAG 5 cut(s) 202, 359, 362, 437, 533
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 3 cut(s) 270, 587, 667
BseYI CCCAGC 2 cut(s) 13, 583
BsgI GTGCAG 3 cut(s) 91, 524, 586
Bsh1236I CGCG 4 cut(s) 113, 135, 362, 484
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 383, 529, 647
BshNI GGYRCC 3 cut(s) 32, 277, 391
BshVI ATCGAT 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 3 cut(s) 119, 384, 401
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 320, 635
BsmBI CGTCTC 2 cut(s) 320, 635
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 3 cut(s) 383, 529, 647
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 55, 255
Bsp68I TCGCGA 1 cut(s) 113
BspACI CCGC 9 cut(s) 27, 94, 135, 170, 176, 199, 210, 281, 316
BspANI GGCC 3 cut(s) 383, 529, 647
BspDI ATCGAT 1 cut(s) 471
BspFNI CGCG 4 cut(s) 113, 135, 362, 484
BspLI GGNNCC 4 cut(s) 34, 123, 279, 393
BspT107I GGYRCC 3 cut(s) 32, 277, 391
BsrBI CCGCTC 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 649
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 2 cut(s) 55, 255
BssNI GRCGYC 3 cut(s) 5, 278, 392
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 3 cut(s) 5, 278, 392
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 4 cut(s) 120, 486, 531, 681
BstDEI CTNAG 1 cut(s) 269
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 3 cut(s) 240, 327, 600
BstFNI CGCG 4 cut(s) 113, 135, 362, 484
BstH2I RGCGCY 2 cut(s) 281, 395
BstHHI GCGC 3 cut(s) 280, 364, 394
BstKTI GATC 2 cut(s) 58, 258
BstMAI GTCTC 2 cut(s) 320, 635
BstMBI GATC 2 cut(s) 55, 255
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 389, 502
BstSLI GKGCMC 1 cut(s) 146
BstUI CGCG 4 cut(s) 113, 135, 362, 484
BstV1I GCAGC 3 cut(s) 270, 587, 667
BstV2I GAAGAC 1 cut(s) 554
Bsu15I ATCGAT 1 cut(s) 471
Bsu36I CCTNAGG 1 cut(s) 269
BsuRI GGCC 3 cut(s) 383, 529, 647
BsuTUI ATCGAT 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 128
BtsCI GGATG 3 cut(s) 240, 327, 600
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 22
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 4 cut(s) 120, 486, 531, 681
CfoI GCGC 3 cut(s) 280, 364, 394
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 4 cut(s) 289, 527, 619, 646
ClaI ATCGAT 1 cut(s) 471
CseI GACGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 298
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 269
DinI GGCGCC 2 cut(s) 279, 393
DpnI GATC 2 cut(s) 57, 257
DpnII GATC 2 cut(s) 55, 255
DrdI GACNNNNNNGTC 1 cut(s) 649
DseDI GACNNNNNNGTC 1 cut(s) 649
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EciI GGCGGA 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 289, 619
Eco57I CTGAAG 1 cut(s) 386
Eco72I CACGTG 1 cut(s) 295
Eco81I CCTNAGG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 272
EgeI GGCGCC 2 cut(s) 279, 393
EheI GGCGCC 2 cut(s) 279, 393
Esp3I CGTCTC 2 cut(s) 320, 635
FaiI YATR 3 cut(s) 42, 413, 579
FaqI GGGAC 1 cut(s) 371
FauI CCCGC 2 cut(s) 192, 203
Fnu4HI GCNGC 5 cut(s) 136, 281, 284, 601, 656
FokI GGATG 3 cut(s) 247, 334, 607
Fsp4HI GCNGC 5 cut(s) 136, 281, 284, 601, 656
FspBI CTAG 1 cut(s) 162
GlaI GCGC 3 cut(s) 279, 363, 393
GluI GCNGC 5 cut(s) 136, 281, 284, 601, 656
GsaI CCCAGC 2 cut(s) 17, 587
HaeII RGCGCY 2 cut(s) 281, 395
HaeIII GGCC 3 cut(s) 383, 529, 647
HapII CCGG 3 cut(s) 119, 384, 401
HgaI GACGC 1 cut(s) 368
HhaI GCGC 3 cut(s) 280, 364, 394
Hin1I GRCGYC 3 cut(s) 5, 278, 392
Hin6I GCGC 3 cut(s) 278, 362, 392
HinP1I GCGC 3 cut(s) 278, 362, 392
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 4 cut(s) 130, 242, 461, 624
HpaII CCGG 3 cut(s) 119, 384, 401
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 4 cut(s) 226, 292, 298, 448
Hpy188I TCNGA 4 cut(s) 60, 82, 126, 623
Hpy188III TCNNGA 5 cut(s) 53, 112, 262, 628, 661
Hpy8I GTNNAC 4 cut(s) 226, 292, 298, 448
Hpy99I CGWCG 4 cut(s) 10, 13, 113, 440
HpyAV CCTTC 4 cut(s) 214, 361, 398, 505
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 4 cut(s) 72, 505, 603, 679
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 389, 502
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 3 cut(s) 5, 278, 392
HspAI GCGC 3 cut(s) 278, 362, 392
KasI GGCGCC 2 cut(s) 277, 391
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 55, 255
LmnI GCTCC 5 cut(s) 127, 189, 207, 213, 424
Lsp1109I GCAGC 3 cut(s) 270, 587, 667
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 57, 257
MbiI CCGCTC 1 cut(s) 210
MboI GATC 2 cut(s) 55, 255
MboII GAAGA 5 cut(s) 69, 196, 346, 470, 559
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 154, 352
Mly113I GGCGCC 2 cut(s) 278, 392
MlyI GAGTC 1 cut(s) 633
MroNI GCCGGC 1 cut(s) 118
MseI TTAA 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 3 cut(s) 119, 384, 401
Mva1269I GAATGC 1 cut(s) 18
MvnI CGCG 4 cut(s) 113, 135, 362, 484
MwoI GCNNNNNNNGC 5 cut(s) 24, 119, 141, 389, 502
NaeI GCCGGC 1 cut(s) 120
NarI GGCGCC 2 cut(s) 278, 392
NdeII GATC 2 cut(s) 55, 255
NgoMIV GCCGGC 1 cut(s) 118
NlaIV GGNNCC 4 cut(s) 34, 123, 279, 393
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 247
NruI TCGCGA 1 cut(s) 113
PctI GAATGC 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 130, 242, 461
PkrI GCNGC 5 cut(s) 137, 282, 285, 602, 657
PleI GAGTC 1 cut(s) 632
PluTI GGCGCC 2 cut(s) 281, 395
PmaCI CACGTG 1 cut(s) 295
PmlI CACGTG 1 cut(s) 295
PpsI GAGTC 1 cut(s) 632
Ppu21I YACGTR 1 cut(s) 295
PspCI CACGTG 1 cut(s) 295
PspFI CCCAGC 2 cut(s) 13, 583
PspN4I GGNNCC 4 cut(s) 34, 123, 279, 393
PspPI GGNCC 4 cut(s) 289, 527, 619, 646
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 5 cut(s) 136, 281, 284, 601, 656
Sau3AI GATC 2 cut(s) 55, 255
Sau96I GGNCC 4 cut(s) 289, 527, 619, 646
SchI GAGTC 1 cut(s) 633
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 225, 270, 297, 429, 535, 660
SfaNI GCATC 1 cut(s) 105
SfoI GGCGCC 2 cut(s) 279, 393
SinI GGWCC 2 cut(s) 289, 619
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 2 cut(s) 154, 352
SsiI CCGC 9 cut(s) 27, 94, 135, 170, 176, 199, 210, 281, 316
SspDI GGCGCC 2 cut(s) 277, 391
SspMI CTAG 1 cut(s) 162
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 471
TaqII GACCGA 1 cut(s) 35
TasI AATT 2 cut(s) 154, 352
TauI GCSGC 2 cut(s) 138, 283
TfiI GAWTC 3 cut(s) 130, 242, 461
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 1 cut(s) 29
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 3 cut(s) 283, 600, 655
Tsp45I GTSAC 1 cut(s) 247
TspGWI ACGGA 4 cut(s) 97, 266, 344, 454
TspRI CASTG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 289, 619
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 1 cut(s) 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.