RchiOBHm_Chr1g0373501

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013317
Physical Location & Seq
Reverse (-)
61701525 .. 61702417
893 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGGTTCCCTCTAATACTCTCATCTGTATCAGCTTAGACATCATGGCAAAGCTTCTTCTGGTTTGTGGTCTTGTAGTTCTTGGATTTGCACTAACATGCTATGCTGCCACAACCTACACGGTGGGTGGTAACTCTGGCTGGGACATAAGCACTGATCTCCCTACATGGGCCTCAGACAAGAAGTTCGTCGTCGGCGATGTTTTATGGTTCCAGTATTCATCATCAAACAGTGTCAATCAAGTGACCAAAGAAAACTTCGAGGGCTGCAACACGACCAATGTAGTGAAGTCATATACCGGAGGGAACACAACGGTCACATTGACAAGACCTGGTGAGTGGTATTTTGTGAGTGGTAACAAGCTCTATTGCTTGGGAGGGATGAAGCTTCAAGTACCCGTGCAAGGTAACCAACTATCTTATGCGCCGGCCAGGGCACCGCAGTCGTCAACCGGTTCGGACCAAGGGCCAAACTCTCTTCCAAACGACCCTTCTTCTAAGAACAACACTCCCACTTCAGCTGGGCTCAGCATCCATGGTGGTTCTGATAATGTTCTTGTCTTGATTGTTTTCGGTACTTTAGCTGCCATGCTATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

199

Amino Acids

21.12

Weight (kDa)

5.66

Isoelectric Point (pI)

25.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 47 - 127 3.7e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07475
fragaria_vesca FvH4_7g26810
malus_domestica MD01G1176400.v1.1 MD07G1247200.v1.1
prunus_persica Prupe.2G271300_v2.0.a1
pyrus_communis pycom01g18700 pycom07g22130
rosa_chinensis RchiOBHm_Chr1g0373501
rosa_laevigata RLG00000026821
rosa_multiflora Rmu_co8415803.1_g000001 Rmu_sc0028247.1_g000003
rosa_roxburghii Rroxscaffold_4G00284200
rosa_rugosa Rorug01G0377700
rosa_samantha Rh1AG387000 Rh1BG351300 Rh1CG364100 Rh1DG381800
rosa_wichuraiana Rw1G034830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 433
AccB7I CCANNNNNTGG 1 cut(s) 591
AciI CCGC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 426
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 2 cut(s) 393, 574
AfiI CCNNNNNNNGG 3 cut(s) 166, 401, 591
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 1 cut(s) 389
AjnI CCWGG 2 cut(s) 328, 428
AjuI GAANNNNNNNTTGG 4 cut(s) 239, 271, 472, 504
AluBI AGCT 6 cut(s) 33, 52, 361, 385, 518, 581
AluI AGCT 6 cut(s) 33, 52, 361, 385, 518, 581
AoxI GGCC 3 cut(s) 168, 426, 464
ApeKI GCWGC 3 cut(s) 104, 264, 581
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AsiGI ACCGGT 1 cut(s) 449
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 3 cut(s) 168, 457, 464
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 436
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 525
BbvI GCAGC 3 cut(s) 91, 251, 568
BcgI CGANNNNNNTGC 2 cut(s) 423, 457
BciT130I CCWGG 2 cut(s) 330, 430
BisI GCNGC 3 cut(s) 105, 265, 582
BlpI GCTNAGC 1 cut(s) 524
BlsI GCNGC 3 cut(s) 106, 266, 583
Bme1390I CCNGG 2 cut(s) 330, 430
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 3 cut(s) 168, 457, 464
BmiI GGNNCC 3 cut(s) 6, 209, 435
BmrFI CCNGG 2 cut(s) 330, 430
BmsI GCATC 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 524
BsaJI CCNNGG 3 cut(s) 429, 460, 532
BsaWI WCCGGW 2 cut(s) 296, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 401, 591
Bse118I RCCGGY 2 cut(s) 424, 449
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 2 cut(s) 330, 430
BseDI CCNNGG 3 cut(s) 429, 460, 532
BseGI GGATG 3 cut(s) 384, 528, 600
BseLI CCNNNNNNNGG 3 cut(s) 166, 401, 591
BseMII CTCAG 2 cut(s) 186, 538
BseNI ACTGG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 3 cut(s) 91, 251, 568
BseYI CCCAGC 2 cut(s) 138, 518
BshFI GGCC 3 cut(s) 170, 428, 466
BshNI GGYRCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 449
BsiSI CCGG 3 cut(s) 297, 425, 450
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 166, 401, 591
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 3 cut(s) 170, 428, 466
Bsp1286I GDGCHC 2 cut(s) 436, 525
Bsp143I GATC 1 cut(s) 154
Bsp1720I GCTNAGC 1 cut(s) 524
Bsp19I CCATGG 1 cut(s) 532
BspACI CCGC 1 cut(s) 437
BspANI GGCC 3 cut(s) 170, 428, 466
BspCNI CTCAG 2 cut(s) 185, 537
BspLI GGNNCC 3 cut(s) 6, 209, 435
BspT107I GGYRCC 1 cut(s) 433
BsrFI RCCGGY 2 cut(s) 424, 449
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 2 cut(s) 424, 449
BssECI CCNNGG 3 cut(s) 429, 460, 532
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 2 cut(s) 460, 532
Bst2UI CCWGG 2 cut(s) 330, 430
Bst4CI ACNGT 3 cut(s) 121, 230, 313
Bst6I CTCTTC 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 4 cut(s) 34, 172, 495, 524
BstDSI CCRYGG 1 cut(s) 532
BstEII GGTNACC 1 cut(s) 404
BstF5I GGATG 3 cut(s) 384, 528, 600
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstNI CCWGG 2 cut(s) 330, 430
BstNSI RCATGY 1 cut(s) 99
BstPI GGTNACC 1 cut(s) 404
BstSCI CCNGG 2 cut(s) 328, 428
BstSLI GKGCMC 1 cut(s) 436
BstV1I GCAGC 3 cut(s) 91, 251, 568
BsuRI GGCC 3 cut(s) 170, 428, 466
BtgI CCRYGG 1 cut(s) 532
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 3 cut(s) 384, 528, 600
BtsIMutI CAGTG 2 cut(s) 150, 235
Cac8I GCNNGC 1 cut(s) 426
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 2 cut(s) 424, 449
Cfr13I GGNCC 3 cut(s) 168, 457, 464
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 2 cut(s) 392, 573
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 5 cut(s) 43, 96, 165, 533, 586
CviQI GTAC 2 cut(s) 392, 573
DdeI CTNAG 4 cut(s) 34, 172, 495, 524
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 460, 532
Eco24I GRGCYC 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 498
Eco91I GGTNACC 1 cut(s) 404
EcoO65I GGTNACC 1 cut(s) 404
EcoRII CCWGG 2 cut(s) 328, 428
EcoT14I CCWWGG 2 cut(s) 460, 532
EcoT38I GRGCYC 1 cut(s) 525
ErhI CCWWGG 2 cut(s) 460, 532
FaeI CATG 5 cut(s) 46, 99, 168, 536, 589
FaqI GGGAC 1 cut(s) 155
FatI CATG 5 cut(s) 42, 95, 164, 532, 585
Fnu4HI GCNGC 3 cut(s) 105, 265, 582
FokI GGATG 2 cut(s) 391, 515
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 3 cut(s) 105, 265, 582
GlaI GCGC 1 cut(s) 423
GluI GCNGC 3 cut(s) 105, 265, 582
GsaI CCCAGC 2 cut(s) 142, 522
HaeIII GGCC 3 cut(s) 170, 428, 466
HapII CCGG 3 cut(s) 297, 425, 450
HhaI GCGC 1 cut(s) 424
Hin1II CATG 5 cut(s) 46, 99, 168, 536, 589
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HindIII AAGCTT 2 cut(s) 50, 383
HpaII CCGG 3 cut(s) 297, 425, 450
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 3 cut(s) 175, 457, 544
Hpy188III TCNNGA 1 cut(s) 559
Hpy8I GTNNAC 1 cut(s) 447
Hpy99I CGWCG 2 cut(s) 191, 194
HpyAV CCTTC 1 cut(s) 498
HpyCH4III ACNGT 3 cut(s) 121, 230, 313
HpyCH4V TGCA 3 cut(s) 89, 267, 400
HpyF3I CTNAG 4 cut(s) 34, 172, 495, 524
Hsp92II CATG 5 cut(s) 46, 99, 168, 536, 589
HspAI GCGC 1 cut(s) 422
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Kzo9I GATC 1 cut(s) 154
Lsp1109I GCAGC 3 cut(s) 91, 251, 568
LweI GCATC 1 cut(s) 537
MabI ACCWGGT 1 cut(s) 328
MaeIII GTNAC 5 cut(s) 128, 241, 313, 353, 404
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 47, 467, 483
MhlI GDGCHC 2 cut(s) 436, 525
MnlI CCTC 5 cut(s) 19, 181, 253, 293, 368
MroNI GCCGGC 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 3 cut(s) 297, 425, 450
MspR9I CCNGG 2 cut(s) 330, 430
MvaI CCWGG 2 cut(s) 330, 430
NaeI GCCGGC 1 cut(s) 426
NcoI CCATGG 1 cut(s) 532
NdeII GATC 1 cut(s) 154
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 5 cut(s) 46, 99, 168, 536, 589
NlaIV GGNNCC 3 cut(s) 6, 209, 435
NmuCI GTSAC 2 cut(s) 241, 313
NspI RCATGY 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 1 cut(s) 426
PflMI CCANNNNNTGG 1 cut(s) 591
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 3 cut(s) 106, 266, 583
Psp6I CCWGG 2 cut(s) 328, 428
PspEI GGTNACC 1 cut(s) 404
PspFI CCCAGC 2 cut(s) 138, 518
PspGI CCWGG 2 cut(s) 328, 428
PspN4I GGNNCC 3 cut(s) 6, 209, 435
PspPI GGNCC 3 cut(s) 168, 457, 464
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 2 cut(s) 393, 574
RsaNI GTAC 2 cut(s) 392, 573
RseI CAYNNNNRTG 1 cut(s) 94
SatI GCNGC 3 cut(s) 105, 265, 582
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 3 cut(s) 168, 457, 464
ScrFI CCNGG 2 cut(s) 330, 430
SduI GDGCHC 2 cut(s) 436, 525
SetI ASST 9 cut(s) 35, 54, 116, 331, 363, 387, 406, 520, 583
SexAI ACCWGGT 1 cut(s) 328
SfaNI GCATC 1 cut(s) 537
SinI GGWCC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 94
SsiI CCGC 1 cut(s) 437
StyD4I CCNGG 2 cut(s) 328, 428
StyI CCWWGG 2 cut(s) 460, 532
TaaI ACNGT 3 cut(s) 121, 230, 313
TaqI TCGA 1 cut(s) 258
TscAI CASTG 2 cut(s) 157, 235
TseFI GTSAC 2 cut(s) 241, 313
TseI GCWGC 3 cut(s) 104, 264, 581
Tsp45I GTSAC 2 cut(s) 241, 313
TspDTI ATGAA 2 cut(s) 207, 395
TspRI CASTG 2 cut(s) 157, 235
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 457
XceI RCATGY 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.