RchiOBHm_Chr1g0376601

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008262
Physical Location & Seq
Forward (+)
63799505 .. 63803386
3882 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGGCCCCCCGCCTCCGTTGCATTCTCTTCCTCGCCGCACTCTCCGCCGCTCTGCTTCCGCCGCTCCTCGCCAGCTCCGGCGACGCCGATCCGATTTACCGGTCTTGTGTGGAGCAGTGTCAAAAATCTGGATGTGTAGGGGAGAAATGCTTTCAGCACTGTAAATTTTCATCTGATGGGAAACCTATTGATGGCCCTTGGTATATCGAAGAACCTCTCTATTTGCGCTGGAAGCAATGGGACTGCCAAACTGACTGTAGGTACCACTGCATGCTTGCGAGGGAGGAGGAAAGGGGGAGACTTGGTGACAAGCCTGTAAAGTATCATGGAAAATGGCCATTTTGGCGTGTTTATGGCATTCAGGAACCTGTTTCCGTTGCTCTCTCTGCTCTCAATCTTGCCATGCAATTTCAAGGTTGGATTTCATTCTTTATCCTCGTATACTACAAGTTGCCTCTGAGGCCAACTAGGAAGACTTACTATGCATATACTGGCGTGTGGCATATCTGGGGGATCTTATCAATGAATGCTTGGTTTTGGAGCGGTGTATTTCACAGCCGGGATGTGGAGTTGACAGAGAAGCTAGATATTTCTTCTGCTGTCGCATTACTTGGTTTTTCCCTCATTGTAGCAATACTGAGAGCTTTCAATGTCAGAGATGAGGCCGCCAGGGTCATGGTCTGTGCTCCACTGATTGCATTTGTGACCACACACATACTGTACCTGAACTTCTATAAACTTGATTGCGGTTTGAATATGAAGGTTTGCACAGCCATGGGCGTTGCTCATCTTCTTATATGGGCAGTTTGGGCTGGTACTACCCGTCATCTATCACGCTGGAAGTTGTGGGTGGTTGTTGTCGGAGGAGGCCTTACCATGCTCTTGGAGATATATGACTTCCCACCTTACCGAGGATTTATAGATGCTCATGCAATTGCAAACGGTATCACCATCCCTCTCACATACCTTTGGTGGAGTTTTGTCAAGGATGACGCCGAGTTTATGACAGCAGCTCTCCTTAAGAAAGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

344

Amino Acids

39.34

Weight (kDa)

8.83

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 72 - 332 6.5e-92 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccBSI CCGCTC 3 cut(s) 50, 64, 543
AccI GTMKAC 1 cut(s) 441
AciI CCGC 9 cut(s) 10, 36, 45, 48, 59, 62, 543, 666, 747
AclWI GGATC 2 cut(s) 83, 521
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 2 cut(s) 84, 993
AfaI GTAC 3 cut(s) 263, 722, 817
AfiI CCNNNNNNNGG 3 cut(s) 191, 565, 911
AflII CTTAAG 1 cut(s) 1019
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 413, 649, 754
AjnI CCWGG 1 cut(s) 668
AluBI AGCT 4 cut(s) 75, 583, 644, 1013
AluI AGCT 4 cut(s) 75, 583, 644, 1013
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 83, 521
AoxI GGCC 6 cut(s) 3, 193, 335, 461, 663, 868
ApeKI GCWGC 1 cut(s) 1010
ApoI RAATTY 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 4, 194
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 317, 940
BalI TGGCCA 1 cut(s) 337
BanI GGYRCC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 713, 745
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 688
BbvI GCAGC 1 cut(s) 1022
BccI CCATC 3 cut(s) 170, 185, 959
BciT130I CCWGG 1 cut(s) 670
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 468, 584
BfmI CTRYAG 1 cut(s) 256
BfrI CTTAAG 1 cut(s) 1019
BglI GCCNNNNNGGC 2 cut(s) 343, 460
BisI GCNGC 5 cut(s) 36, 48, 62, 666, 1011
BlsI GCNGC 5 cut(s) 37, 49, 63, 667, 1012
Bme1390I CCNGG 2 cut(s) 560, 670
BmgT120I GGNCC 2 cut(s) 4, 194
BmiI GGNNCC 3 cut(s) 6, 263, 366
BmrFI CCNGG 2 cut(s) 560, 670
BmsI GCATC 1 cut(s) 913
BpiI GAAGAC 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 560
BsaHI GRCGYC 2 cut(s) 84, 993
BsaJI CCNNGG 4 cut(s) 197, 669, 774, 910
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 565, 911
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 670
BseDI CCNNGG 4 cut(s) 197, 669, 774, 910
BseGI GGATG 4 cut(s) 137, 568, 951, 994
BseLI CCNNNNNNNGG 3 cut(s) 191, 565, 911
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 2 cut(s) 449, 629
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 3 cut(s) 56, 299, 879
BseXI GCAGC 1 cut(s) 1022
BshFI GGCC 6 cut(s) 5, 195, 337, 463, 665, 870
BshNI GGYRCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 688
BsiSI CCGG 3 cut(s) 78, 100, 559
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 191, 565, 911
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 3 cut(s) 21, 357, 532
BsnI GGCC 6 cut(s) 5, 195, 337, 463, 665, 870
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 2 cut(s) 88, 513
Bsp19I CCATGG 1 cut(s) 774
BspACI CCGC 9 cut(s) 10, 36, 45, 48, 59, 62, 543, 666, 747
BspANI GGCC 6 cut(s) 5, 195, 337, 463, 665, 870
BspCNI CTCAG 2 cut(s) 450, 630
BspLI GGNNCC 3 cut(s) 6, 263, 366
BspPI GGATC 2 cut(s) 83, 521
BspT107I GGYRCC 1 cut(s) 261
BspTI CTTAAG 1 cut(s) 1019
BsrBI CCGCTC 3 cut(s) 50, 64, 543
BsrDI GCAATG 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 4 cut(s) 197, 669, 774, 910
BssMI GATC 2 cut(s) 88, 513
BssNAI GTATAC 1 cut(s) 442
BssNI GRCGYC 2 cut(s) 84, 993
BssT1I CCWWGG 2 cut(s) 197, 774
Bst1107I GTATAC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 4 cut(s) 161, 257, 720, 944
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 84, 993
BstAFI CTTAAG 1 cut(s) 1019
BstC8I GCNNGC 3 cut(s) 73, 272, 276
BstDEI CTNAG 2 cut(s) 458, 638
BstDSI CCRYGG 1 cut(s) 774
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 4 cut(s) 137, 568, 951, 994
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 91, 516
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 2 cut(s) 88, 513
BstMWI GCNNNNNNNGC 8 cut(s) 18, 44, 61, 232, 343, 386, 460, 809
BstNI CCWGG 1 cut(s) 670
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 558, 668
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 1022
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 513
BstXI CCANNNNNNTGG 2 cut(s) 676, 883
BstYI RGATCY 1 cut(s) 513
BstZ17I GTATAC 1 cut(s) 442
BsuRI GGCC 6 cut(s) 5, 195, 337, 463, 665, 870
BtgI CCRYGG 1 cut(s) 774
BtsCI GGATG 4 cut(s) 137, 568, 951, 994
BtsI GCAGTG 2 cut(s) 122, 265
BtsIMutI CAGTG 4 cut(s) 122, 157, 265, 689
Cac8I GCNNGC 3 cut(s) 73, 272, 276
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 4, 194
CseI GACGC 2 cut(s) 92, 1001
Csp6I GTAC 3 cut(s) 262, 721, 816
CspAI ACCGGT 1 cut(s) 99
CviAII CATG 7 cut(s) 271, 326, 403, 676, 775, 877, 929
CviQI GTAC 3 cut(s) 262, 721, 816
DdeI CTNAG 2 cut(s) 458, 638
DpnI GATC 2 cut(s) 90, 515
DpnII GATC 2 cut(s) 88, 513
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 2 cut(s) 34, 48
Eco130I CCWWGG 2 cut(s) 197, 774
Eco147I AGGCCT 1 cut(s) 870
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoRII CCWGG 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 197, 774
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 2 cut(s) 197, 774
FaeI CATG 7 cut(s) 274, 329, 406, 679, 778, 880, 932
FaqI GGGAC 1 cut(s) 254
FatI CATG 7 cut(s) 270, 325, 402, 675, 774, 876, 928
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 5 cut(s) 36, 48, 62, 666, 1011
FokI GGATG 4 cut(s) 144, 575, 938, 1001
Fsp4HI GCNGC 5 cut(s) 36, 48, 62, 666, 1011
FspBI CTAG 2 cut(s) 468, 584
GlaI GCGC 1 cut(s) 227
GluI GCNGC 5 cut(s) 36, 48, 62, 666, 1011
HaeIII GGCC 6 cut(s) 5, 195, 337, 463, 665, 870
HapII CCGG 3 cut(s) 78, 100, 559
HgaI GACGC 2 cut(s) 92, 1001
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 2 cut(s) 84, 993
Hin1II CATG 7 cut(s) 274, 329, 406, 679, 778, 880, 932
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HpaII CCGG 3 cut(s) 78, 100, 559
HphI GGTGA 2 cut(s) 317, 940
Hpy166II GTNNAC 2 cut(s) 442, 573
Hpy188I TCNGA 5 cut(s) 93, 175, 459, 656, 863
Hpy188III TCNNGA 2 cut(s) 129, 362
Hpy8I GTNNAC 2 cut(s) 442, 573
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 754
HpyCH4III ACNGT 4 cut(s) 161, 257, 720, 944
HpyCH4V TGCA 8 cut(s) 21, 270, 406, 485, 698, 768, 932, 938
HpyF10VI GCNNNNNNNGC 8 cut(s) 18, 44, 61, 232, 343, 386, 460, 809
HpyF3I CTNAG 2 cut(s) 458, 638
Hsp92I GRCGYC 2 cut(s) 84, 993
Hsp92II CATG 7 cut(s) 274, 329, 406, 679, 778, 880, 932
HspAI GCGC 1 cut(s) 226
KpnI GGTACC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 88, 513
LmnI GCTCC 5 cut(s) 69, 80, 112, 540, 691
Lsp1109I GCAGC 1 cut(s) 1022
LweI GCATC 1 cut(s) 913
MaeI CTAG 2 cut(s) 468, 584
MaeIII GTNAC 2 cut(s) 305, 703
MalI GATC 2 cut(s) 90, 515
MbiI CCGCTC 3 cut(s) 50, 64, 543
MboI GATC 2 cut(s) 88, 513
MboII GAAGA 5 cut(s) 19, 221, 484, 585, 782
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 688
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 3 cut(s) 164, 407, 933
MluNI TGGCCA 1 cut(s) 337
MmeI TCCRAC 2 cut(s) 398, 841
Mox20I TGGCCA 1 cut(s) 337
Mph1103I ATGCAT 1 cut(s) 487
MscI TGGCCA 1 cut(s) 337
MseI TTAA 1 cut(s) 1020
MslI CAYNNNNRTG 1 cut(s) 773
Msp20I TGGCCA 1 cut(s) 337
MspCI CTTAAG 1 cut(s) 1019
MspI CCGG 3 cut(s) 78, 100, 559
MspR9I CCNGG 2 cut(s) 560, 670
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 3 cut(s) 21, 357, 532
MvaI CCWGG 1 cut(s) 670
MwoI GCNNNNNNNGC 8 cut(s) 18, 44, 61, 232, 343, 386, 460, 809
NciI CCSGG 1 cut(s) 560
NcoI CCATGG 1 cut(s) 774
NdeII GATC 2 cut(s) 88, 513
NlaIII CATG 7 cut(s) 274, 329, 406, 679, 778, 880, 932
NlaIV GGNNCC 3 cut(s) 6, 263, 366
NmeAIII GCCGAG 1 cut(s) 1021
NmuCI GTSAC 2 cut(s) 305, 703
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PceI AGGCCT 1 cut(s) 870
PctI GAATGC 3 cut(s) 21, 357, 532
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 5 cut(s) 37, 49, 63, 667, 1012
Psp6I CCWGG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 668
PspN4I GGNNCC 3 cut(s) 6, 263, 366
PspPI GGNCC 2 cut(s) 4, 194
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 3 cut(s) 263, 722, 817
RsaNI GTAC 3 cut(s) 262, 721, 816
RseI CAYNNNNRTG 1 cut(s) 773
SaqAI TTAA 1 cut(s) 1020
SatI GCNGC 5 cut(s) 36, 48, 62, 666, 1011
Sau3AI GATC 2 cut(s) 88, 513
Sau96I GGNCC 2 cut(s) 4, 194
ScrFI CCNGG 2 cut(s) 560, 670
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 1 cut(s) 913
SfcI CTRYAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 1019
SmoI CTYRAG 1 cut(s) 1019
SphI GCATGC 1 cut(s) 274
Sse9I AATT 3 cut(s) 164, 407, 933
SseBI AGGCCT 1 cut(s) 870
SsiI CCGC 9 cut(s) 10, 36, 45, 48, 59, 62, 543, 666, 747
SspMI CTAG 2 cut(s) 468, 584
StuI AGGCCT 1 cut(s) 870
StyD4I CCNGG 2 cut(s) 558, 668
StyI CCWWGG 2 cut(s) 197, 774
TaaI ACNGT 4 cut(s) 161, 257, 720, 944
TaqI TCGA 1 cut(s) 207
TasI AATT 3 cut(s) 164, 407, 933
TauI GCSGC 4 cut(s) 38, 50, 64, 668
Tru1I TTAA 1 cut(s) 1020
Tru9I TTAA 1 cut(s) 1020
TscAI CASTG 4 cut(s) 122, 164, 272, 696
TseFI GTSAC 2 cut(s) 305, 703
TseI GCWGC 1 cut(s) 1010
Tsp45I GTSAC 2 cut(s) 305, 703
TspDTI ATGAA 4 cut(s) 159, 414, 539, 773
TspGWI ACGGA 2 cut(s) 5, 364
TspRI CASTG 4 cut(s) 122, 164, 272, 696
Vha464I CTTAAG 1 cut(s) 1019
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 2 cut(s) 468, 584
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.