RchiOBHm_Chr1g0381501

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009192
Physical Location & Seq
Reverse (-)
66833082 .. 66836316
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1644 bp
ATGGCAGCTTCTCTTCTTCTCCCTTCTCACTTCTTCAACACCTACAGGATAAGCAAACTGTGCTTACATCACATGCAGTCAGCAAACTCACACAAAGGCATCACTTGCTTATTCCCTGTTAGAGCACTGGCCTCAAGGTCTTTTGCTTCTGTTGGGTCAGTAGAAAATCATGTTTCAGCTCCAAACAAAACTCACAGGTCTGAAGGTTCTAAAACATCCGATGGGACGGAGAATGATTTCGAGAGAGAGTTACAAGAGTTGTTTGATGAAGTGAAAATGTTGGTTATGAACGGGAATAAAGATGATGCAGTAGACTTGCTTCGAGCGAATTATGAGGCTGTGAAGGAGAGGATGGATGCCGGTGTTAGAGGCATTGAGGAAGCTGCTACCATTGACATCATAGCTCTAGGGTATATGGCTATTGGCGACTTTAAGTTTGTCGAGTCATTACTGGATATGTTGAATGAGATTGTTGGCAGTCTAAAGGATGATGAACCACTGCTGGATTCAGTTCTGGTGCATATGGGAAGCATGTATTCAACTTTGGCGAAGTTTGAGAAATCAATGCTTGTATATAGGAGGGCAATTGATAACATGGAGAACATGTATGGGAAAAATAGTGTTTTTCTTATCACACCAATTTTGGGCATGGCGAAAGTTCTCAGTTCTATTGGAAGGACTACAAAAGCAGTAGAGTTATACCATCGTGCAATAACTCTTCTTGAATCTAGCAGAGGTGCTGAAAGTGAGGATTTGGTCATACCTTTGTTTGGTCTTGGCAGCCTTTTACTCAAACAAGGGAAACCTATTGAGGCAGAAACTCCTTTTCTAAGAATTTTAAATATATACACAAAGTTGTATGGAGAAGACGACGGAAGAGTTGGAATGGCTATGAGTTCCCTGGCCCGTGCGAAGTGTGCAATGGGAAAGGCAAATGAAGCAATTGATTTATATAAAAAGGCTCTTAAAGTCATCAAGGATTCCAATTATATGGCTTCAGATGACAGCATAGTGGAGAAGATGCGGATAGATTTGGCAGAATTACTTCATGCTGTTGGAAGGGGAAAGGAAGGCCGAGAGCTACTGGAGGAATGCTTGCTGATCACTGAGAAACACAAAGGCAAAGAGGACCCCAGCTCAGTGACACACCTTATCAATCTCGCAACTTCGCATTCGCGCTCAAAGAACTATGTGGAGGCTGAGCGCTTGCTGAGGACGAGTTTGCAGGTCTTGGCAAAGACAGTGGCACCCGATGACCAATCCATCTCGTTCCCAATATTGCACCTCGCCGTTACTCTCTACCAATTAAAACGGGATGAAGAAGCAGAACAGCTCGCCCTCCAGGCTTTGCACATTCGTGAGAAAGCATTCGGAAAGGACTCCCTTCCCGTTGCGGAGGCTCTCGACTGTCTGGTGTCAATCCAAACTAGATTGACAAGGGACGACGAAGCGTTACTAGATCAGCTGGAGAGGGTTTTGAGCATCCAAGAGAAAGAGTTCGGCCCCGAGAGCAAGGAGGTTTTGACAACCCTAAAAAAAGTTGTACATTACTTGGACAAACTAGGCAGGAAAAACGACAAGCTCCTCTTGCAGAAAAGGCTCTCCGCCCTTAGATCAAAATTCAAGCAACAAATCCAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_8

Protein Analysis

547

Amino Acids

61.13

Weight (kDa)

6.35

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NPHP3 PF24885 159 - 238 3.4e-06 Nephrocystin-3 TPR domain
TPR_MalT PF17874 171 - 452 4.1e-13 MalT-like TPR region
TPR_12 PF13424 215 - 285 4.7e-09 Tetratricopeptide repeat
TPR_12 PF13424 258 - 324 2.4e-11 Tetratricopeptide repeat
TPR_12 PF13424 343 - 411 2.7e-09 Tetratricopeptide repeat
TPR_NPHP3 PF24885 403 - 505 1.5e-06 Nephrocystin-3 TPR domain
TPR_10 PF13374 428 - 461 2e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1216
AccB1I GGYRCC 1 cut(s) 1246
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 1177
AciI CCGC 3 cut(s) 1024, 1394, 1605
AcsI RAATTY 2 cut(s) 834, 1619
AcuI CTGAAG 2 cut(s) 222, 981
AfaI GTAC 1 cut(s) 1545
AfeI AGCGCT 1 cut(s) 1205
AfiI CCNNNNNNNGG 2 cut(s) 644, 770
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 5 cut(s) 37, 463, 540, 725, 1624
AjnI CCWGG 2 cut(s) 900, 1341
AleI CACNNNNGTG 1 cut(s) 1356
AluBI AGCT 9 cut(s) 8, 179, 383, 404, 1081, 1137, 1333, 1465, 1582
AluI AGCT 9 cut(s) 8, 179, 383, 404, 1081, 1137, 1333, 1465, 1582
Alw21I GWGCWC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 1505
Aor51HI AGCGCT 1 cut(s) 1205
AoxI GGCC 4 cut(s) 129, 903, 1072, 1501
ApeKI GCWGC 3 cut(s) 5, 383, 780
ApoI RAATTY 2 cut(s) 834, 1619
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
Asp700I GAANNNNTTC 4 cut(s) 236, 1044, 1367, 1496
AspLEI GCGC 2 cut(s) 1179, 1206
AspS9I GGNCC 3 cut(s) 904, 1129, 1502
AvaI CYCGRG 1 cut(s) 1505
AvaII GGWCC 1 cut(s) 1129
BanI GGYRCC 1 cut(s) 1246
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbsI GAAGAC 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 1211
BbvI GCAGC 3 cut(s) 17, 370, 792
BccI CCATC 4 cut(s) 215, 346, 711, 1271
BceAI ACGGC 1 cut(s) 1274
BciT130I CCWGG 2 cut(s) 902, 1343
BclI TGATCA 1 cut(s) 1101
BfaI CTAG 5 cut(s) 407, 729, 1428, 1457, 1562
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 1207
BfuAI ACCTGC 1 cut(s) 1216
BglI GCCNNNNNGGC 1 cut(s) 1343
BisI GCNGC 3 cut(s) 6, 384, 781
BlpI GCTNAGC 1 cut(s) 1200
BlsI GCNGC 3 cut(s) 7, 385, 782
Bme1390I CCNGG 2 cut(s) 902, 1343
Bme18I GGWCC 1 cut(s) 1129
BmeT110I CYCGRG 1 cut(s) 1505
BmgT120I GGNCC 3 cut(s) 904, 1129, 1502
BmiI GGNNCC 3 cut(s) 1131, 1248, 1504
BmrFI CCNGG 2 cut(s) 902, 1343
BmsI GCATC 5 cut(s) 108, 295, 346, 1011, 1491
BpiI GAAGAC 1 cut(s) 873
BpmI CTGGAG 3 cut(s) 1106, 1325, 1487
Bpu10I CCTNAGC 1 cut(s) 1211
Bpu1102I GCTNAGC 1 cut(s) 1200
BpuEI CTTGAG 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 900
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 770
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 132, 456, 1089
Bse3DI GCAATG 1 cut(s) 927
BseBI CCWGG 2 cut(s) 902, 1343
BseDI CCNNGG 1 cut(s) 900
BseGI GGATG 6 cut(s) 215, 357, 361, 493, 1321, 1482
BseLI CCNNNNNNNGG 2 cut(s) 644, 770
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 5 cut(s) 676, 1098, 1152, 1191, 1202
BseNI ACTGG 3 cut(s) 132, 456, 1089
BseRI GAGGAG 1 cut(s) 1574
BseXI GCAGC 3 cut(s) 17, 370, 792
BseYI CCCAGC 1 cut(s) 1133
Bsh1236I CGCG 1 cut(s) 1177
BshFI GGCC 4 cut(s) 131, 905, 1074, 1503
BshNI GGYRCC 1 cut(s) 1246
BsiHKAI GWGCWC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 1505
BsiSI CCGG 1 cut(s) 360
BslFI GGGAC 2 cut(s) 238, 1454
BslI CCNNNNNNNGG 2 cut(s) 644, 770
BsmFI GGGAC 2 cut(s) 238, 1454
BsmI GAATGC 3 cut(s) 1097, 1171, 1367
BsnI GGCC 4 cut(s) 131, 905, 1074, 1503
BsoBI CYCGRG 1 cut(s) 1505
Bsp1286I GDGCHC 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 1543
Bsp143I GATC 3 cut(s) 1101, 1459, 1613
Bsp1720I GCTNAGC 1 cut(s) 1200
BspACI CCGC 3 cut(s) 1024, 1394, 1605
BspANI GGCC 4 cut(s) 131, 905, 1074, 1503
BspCNI CTCAG 5 cut(s) 675, 1099, 1151, 1192, 1203
BspFNI CGCG 1 cut(s) 1177
BspLI GGNNCC 3 cut(s) 1131, 1248, 1504
BspMI ACCTGC 1 cut(s) 1216
BspT107I GGYRCC 1 cut(s) 1246
BsrDI GCAATG 1 cut(s) 927
BsrFI RCCGGY 1 cut(s) 359
BsrGI TGTACA 1 cut(s) 1543
BsrI ACTGG 3 cut(s) 132, 456, 1089
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 3 cut(s) 1101, 1459, 1613
Bst2UI CCWGG 2 cut(s) 902, 1343
Bst4CI ACNGT 3 cut(s) 60, 1243, 1409
Bst6I CTCTTC 3 cut(s) 18, 723, 871
BstAPI GCANNNNNTGC 2 cut(s) 60, 105
BstAUI TGTACA 1 cut(s) 1543
BstC8I GCNNGC 3 cut(s) 1097, 1208, 1335
BstDEI CTNAG 7 cut(s) 662, 830, 1107, 1138, 1200, 1211, 1610
BstF5I GGATG 6 cut(s) 215, 357, 361, 493, 1321, 1482
BstFNI CGCG 1 cut(s) 1177
BstH2I RGCGCY 1 cut(s) 1207
BstHHI GCGC 2 cut(s) 1179, 1206
BstKTI GATC 3 cut(s) 1104, 1462, 1616
BstMBI GATC 3 cut(s) 1101, 1459, 1613
BstMWI GCNNNNNNNGC 8 cut(s) 60, 105, 917, 938, 1343, 1509, 1588, 1597
BstNI CCWGG 2 cut(s) 902, 1343
BstNSI RCATGY 3 cut(s) 76, 535, 607
BstSCI CCNGG 2 cut(s) 900, 1341
BstSFI CTRYAG 1 cut(s) 43
BstUI CGCG 1 cut(s) 1177
BstV1I GCAGC 3 cut(s) 17, 370, 792
BstV2I GAAGAC 1 cut(s) 873
BstXI CCANNNNNNTGG 1 cut(s) 991
BsuRI GGCC 4 cut(s) 131, 905, 1074, 1503
BtsCI GGATG 6 cut(s) 215, 357, 361, 493, 1321, 1482
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 5 cut(s) 125, 497, 1104, 1146, 1248
BveI ACCTGC 1 cut(s) 1216
Cac8I GCNNGC 3 cut(s) 1097, 1208, 1335
CfoI GCGC 2 cut(s) 1179, 1206
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 3 cut(s) 904, 1129, 1502
Csp6I GTAC 1 cut(s) 1544
CspCI CAANNNNNGTGG 2 cut(s) 1224, 1259
CviAII CATG 7 cut(s) 73, 170, 532, 595, 604, 649, 1049
CviQI GTAC 1 cut(s) 1544
DdeI CTNAG 7 cut(s) 662, 830, 1107, 1138, 1200, 1211, 1610
DpnI GATC 3 cut(s) 1103, 1461, 1615
DpnII GATC 3 cut(s) 1101, 1459, 1613
DraI TTTAAA 1 cut(s) 840
Eam1104I CTCTTC 3 cut(s) 18, 723, 871
EarI CTCTTC 3 cut(s) 18, 723, 871
EciI GGCGGA 1 cut(s) 1594
Eco47I GGWCC 1 cut(s) 1129
Eco47III AGCGCT 1 cut(s) 1205
Eco57I CTGAAG 2 cut(s) 222, 981
Eco88I CYCGRG 1 cut(s) 1505
EcoO109I RGGNCCY 1 cut(s) 1129
EcoRII CCWGG 2 cut(s) 900, 1341
FaeI CATG 7 cut(s) 76, 173, 535, 598, 607, 652, 1052
FalI AAGNNNNNCTT 2 cut(s) 1571, 1603
FaqI GGGAC 2 cut(s) 238, 1454
FatI CATG 7 cut(s) 72, 169, 531, 594, 603, 648, 1048
FauNDI CATATG 1 cut(s) 522
FbaI TGATCA 1 cut(s) 1101
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 6, 384, 781
FokI GGATG 6 cut(s) 202, 364, 368, 500, 1328, 1469
Fsp4HI GCNGC 3 cut(s) 6, 384, 781
FspBI CTAG 5 cut(s) 407, 729, 1428, 1457, 1562
GlaI GCGC 2 cut(s) 1178, 1205
GluI GCNGC 3 cut(s) 6, 384, 781
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 3 cut(s) 1106, 1325, 1487
HaeII RGCGCY 1 cut(s) 1207
HaeIII GGCC 4 cut(s) 131, 905, 1074, 1503
HapII CCGG 1 cut(s) 360
HhaI GCGC 2 cut(s) 1179, 1206
Hin1II CATG 7 cut(s) 76, 173, 535, 598, 607, 652, 1052
Hin6I GCGC 2 cut(s) 1177, 1204
HinP1I GCGC 2 cut(s) 1177, 1204
HinfI GANTC 5 cut(s) 443, 506, 725, 980, 1379
HpaII CCGG 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 202, 220, 1000, 1373
Hpy188III TCNNGA 4 cut(s) 241, 722, 1358, 1403
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 2 cut(s) 875, 1448
HpyAV CCTTC 7 cut(s) 33, 197, 337, 669, 1053, 1064, 1394
HpyCH4III ACNGT 3 cut(s) 60, 1243, 1409
HpyCH4V TGCA 9 cut(s) 76, 308, 520, 710, 920, 1225, 1282, 1351, 1591
HpyF10VI GCNNNNNNNGC 8 cut(s) 60, 105, 917, 938, 1343, 1509, 1588, 1597
HpyF3I CTNAG 7 cut(s) 662, 830, 1107, 1138, 1200, 1211, 1610
Hsp92II CATG 7 cut(s) 76, 173, 535, 598, 607, 652, 1052
HspAI GCGC 2 cut(s) 1177, 1204
Ksp22I TGATCA 1 cut(s) 1101
Kzo9I GATC 3 cut(s) 1101, 1459, 1613
LmnI GCTCC 2 cut(s) 184, 1587
Lsp1109I GCAGC 3 cut(s) 17, 370, 792
LweI GCATC 5 cut(s) 108, 295, 346, 1011, 1491
MaeI CTAG 5 cut(s) 407, 729, 1428, 1457, 1562
MaeIII GTNAC 4 cut(s) 249, 1141, 1291, 1452
MalI GATC 3 cut(s) 1103, 1461, 1615
MboI GATC 3 cut(s) 1101, 1459, 1613
MboII GAAGA 8 cut(s) 5, 8, 25, 710, 878, 888, 1030, 1331
MfeI CAATTG 2 cut(s) 585, 942
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 9 cut(s) 328, 585, 639, 834, 942, 985, 1040, 1304, 1619
MlyI GAGTC 2 cut(s) 452, 1373
MmeI TCCRAC 2 cut(s) 862, 1036
MroXI GAANNNNTTC 4 cut(s) 236, 1044, 1367, 1496
MseI TTAA 4 cut(s) 432, 839, 966, 1307
MslI CAYNNNNRTG 1 cut(s) 1356
MspA1I CMGCKG 1 cut(s) 1465
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 902, 1343
MunI CAATTG 2 cut(s) 585, 942
Mva1269I GAATGC 3 cut(s) 1097, 1171, 1367
MvaI CCWGG 2 cut(s) 902, 1343
MvnI CGCG 1 cut(s) 1177
MwoI GCNNNNNNNGC 8 cut(s) 60, 105, 917, 938, 1343, 1509, 1588, 1597
NdeI CATATG 1 cut(s) 522
NdeII GATC 3 cut(s) 1101, 1459, 1613
NlaIII CATG 7 cut(s) 76, 173, 535, 598, 607, 652, 1052
NlaIV GGNNCC 3 cut(s) 1131, 1248, 1504
NmeAIII GCCGAG 1 cut(s) 1100
NmuCI GTSAC 1 cut(s) 1141
NspI RCATGY 3 cut(s) 76, 535, 607
OliI CACNNNNGTG 1 cut(s) 1356
PciI ACATGT 1 cut(s) 603
PctI GAATGC 3 cut(s) 1097, 1171, 1367
PdmI GAANNNNTTC 4 cut(s) 236, 1044, 1367, 1496
PfeI GAWTC 3 cut(s) 506, 725, 980
PkrI GCNGC 3 cut(s) 7, 385, 782
PleI GAGTC 2 cut(s) 451, 1373
PpsI GAGTC 2 cut(s) 451, 1373
PpuMI RGGWCCY 1 cut(s) 1129
PscI ACATGT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 1129
Psp6I CCWGG 2 cut(s) 900, 1341
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 2 cut(s) 900, 1341
PspN4I GGNNCC 3 cut(s) 1131, 1248, 1504
PspPI GGNCC 3 cut(s) 904, 1129, 1502
PspPPI RGGWCCY 1 cut(s) 1129
PvuII CAGCTG 1 cut(s) 1465
RsaI GTAC 1 cut(s) 1545
RsaNI GTAC 1 cut(s) 1544
RseI CAYNNNNRTG 1 cut(s) 1356
SaqAI TTAA 4 cut(s) 432, 839, 966, 1307
SatI GCNGC 3 cut(s) 6, 384, 781
Sau3AI GATC 3 cut(s) 1101, 1459, 1613
Sau96I GGNCC 3 cut(s) 904, 1129, 1502
SchI GAGTC 2 cut(s) 452, 1373
ScrFI CCNGG 2 cut(s) 902, 1343
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 5 cut(s) 108, 295, 346, 1011, 1491
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 1129
SmiMI CAYNNNNRTG 1 cut(s) 1356
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 9 cut(s) 328, 585, 639, 834, 942, 985, 1040, 1304, 1619
SsiI CCGC 3 cut(s) 1024, 1394, 1605
SspI AATATT 1 cut(s) 1278
SspMI CTAG 5 cut(s) 407, 729, 1428, 1457, 1562
StyD4I CCNGG 2 cut(s) 900, 1341
TaaI ACNGT 3 cut(s) 60, 1243, 1409
TaqI TCGA 4 cut(s) 240, 322, 441, 1404
TasI AATT 9 cut(s) 328, 585, 639, 834, 942, 985, 1040, 1304, 1619
TatI WGTACW 1 cut(s) 1543
TfiI GAWTC 3 cut(s) 506, 725, 980
Tru1I TTAA 4 cut(s) 432, 839, 966, 1307
Tru9I TTAA 4 cut(s) 432, 839, 966, 1307
TscAI CASTG 5 cut(s) 132, 504, 1111, 1146, 1248
TseFI GTSAC 1 cut(s) 1141
TseI GCWGC 3 cut(s) 5, 383, 780
Tsp45I GTSAC 1 cut(s) 1141
TspDTI ATGAA 6 cut(s) 282, 302, 507, 951, 1037, 1332
TspGWI ACGGA 2 cut(s) 242, 888
TspRI CASTG 5 cut(s) 132, 504, 1111, 1146, 1248
VpaK11BI GGWCC 1 cut(s) 1129
XapI RAATTY 2 cut(s) 834, 1619
XceI RCATGY 3 cut(s) 76, 535, 607
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 4 cut(s) 236, 1044, 1367, 1496
XspI CTAG 5 cut(s) 407, 729, 1428, 1457, 1562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.