Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009930

Physical Location & Seq

Genomic Coordinates Reverse (-)

66939875 .. 66943438

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGTACACATCTAGAGCTCAAATACTTCTACTTCACCAATGGTACTCCCATGTCATATTCACCATTTTTCATCTTCTTCACCTTCCCAACAGATCACTACTACTCATCATGGCAAATCCTCGGCCCGATTTCGCATTAACTGGAGGAACCACTATAGTGTTGCTGTTTCTTGCCTCAATCTTCAATGTTCAAGGAGTCCAAGGATCTATAGGAGTGAACTATGGCACAATGGCGAACGACCTCCCTCCACCGTCCCAAGTTGCACACTTCCTTCTACAATCCACCATCATCAACCGTGTTAGGCTCTTTGACACCAACCCTCAAATGCTCCAAGCCTTTGCTCATTCCGGCATTCCACTAACAATCACTATCCCCAATGACCAAATCCCCCACTTCACCAAACTAAGGTTTGCCCAAAATTGGCTCAAAACCAATGTCATACCTTACACCCCGGCCACCAACATAGTCCGCATCTTAATAGGAAATGAAGTACTCTCAACCGCCAACAAGTTGTTCATTGGGAACCTAGTCCCTGCTATGCTAACCCTTCACATGGCACTTGTAGATGCCTCTTTGGACCGCCAAATCAAAGTCTCTACTCCACACTCTCTAGGCATTCTCTCAAGCTCAAGCCCACCATCCACAGGTAAGTTTAGGCAAGGCTATGACACCCATGTCCTTAAACCACTACTCACTTTCTTGAGAATCACCAAGTCCCCTTTCATGGTAAACCCCTATCCATATTTCGGATACTCGGCGGACACGCTCAACTACGCACTTTTCCGACCAAATTCCGGGGTGGTTGATCCCAATACTAAACTCCTATACACCAACATGTTGGATGCACAATTAGATGCTATATATTCAGCTTTAAAGATTGTGGGCTTTTCAGACCTCGAAATTGTTATAGCTGAAACGGGCTGGCCTTCTAAGGGTGATGCAGGCCAAGTTGGTGTTGACCCAGACAGTGCGGCGGACTACAACCAAAATCTCATTCGTCATGTGACATCCGGTAATGGCACCCCATTGATGCCAAAGCGGACTTTTGAGACTTACATCTTTGCCCTGTTCAATGAAAATCTCAAGCCCGGCCCAACATGCGAGAGATATTTTGGGCTTTTCCGACCCGACATGACGCCGGCCTACAATGTCGGAATCCTACGGCACACGGCTAGTTCGTCCATACCCGGGAACGGGAGCTCAAGCCCACCGAAACACCCAAATCCGTTGCCGCCACAAGGAGGGAAGCAATATTGTTTGCCCAAAACTGGGGCTGACACAGAGGCCTTACAGAAGAATATTGATTATGTTTGTGGTCTGGGATTTGATTGTGACCCGATTAAACAAGGTGGGCCGTGCTTTATGCCCAACACGGTTAGAGCCCATGCAGCTTATGCCATGAACAAATACTATCAAGCAACAGGAAGGAACGGCTATGATTGCAATTTTGAGCAAACAGGAGCCACCACTACCGTCGATCCAAGCTATGGAAAATGCAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

501

Amino Acids

55.14

Weight (kDa)

8.88

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	70 - 384	6.7e-79	Glycosyl hydrolases family 17
X8	PF07983	418 - 487	4.4e-19	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24318 AT5G24318 AT5G24318 AT5G24318
fragaria_vesca	FvH4_7g32100
malus_domestica	MD01G1223700.v1.1 MD07G1294400.v1.1
prunus_persica	Prupe.2G314200_v2.0.a1
pyrus_communis	pycom07g26720
rosa_chinensis	RchiOBHm_Chr1g0381691
rosa_laevigata	RLG00000026214
rosa_multiflora	Rmu_co8442059.1_g000001 Rmu_sc0004579.1_g000005 Rmu_ssc0000316.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278510
rosa_rugosa	Rorug01G0430400
rosa_samantha	Rh1AG453800 Rh1BG411000 Rh1CG425400 Rh1DG442800
rosa_wichuraiana	Rw1G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	1019
AccB7I	CCANNNNNTGG	1 cut(s)	1487
AciI	CCGC	8 cut(s)	469, 501, 580, 758, 971, 974, 1039, 1232
AclWI	GGATC	3 cut(s)	211, 800, 1472
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	790
AcyI	GRCGYC	1 cut(s)	1136
AfaI	GTAC	3 cut(s)	5, 44, 492
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	3 cut(s)	184, 191, 1072
AjuI	GAANNNNNNNTTGG	6 cut(s)	497, 529, 704, 736, 978, 1010
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	7 cut(s)	17, 627, 869, 911, 1200, 1391, 1485
AluI	AGCT	7 cut(s)	17, 627, 869, 911, 1200, 1391, 1485
Alw21I	GWGCWC	2 cut(s)	19, 1202
Alw26I	GTCTC	2 cut(s)	598, 1043
AlwI	GGATC	3 cut(s)	211, 800, 1472
Ama87I	CYCGRG	1 cut(s)	1187
AoxI	GGCC	8 cut(s)	122, 453, 923, 943, 1090, 1140, 1284, 1352
ApeKI	GCWGC	1 cut(s)	1388
ApoI	RAATTY	1 cut(s)	790
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
AspS9I	GGNCC	4 cut(s)	123, 577, 1091, 1352
AsuC2I	CCSGG	5 cut(s)	452, 796, 1089, 1188, 1189
AsuHPI	GGTGA	6 cut(s)	26, 52, 71, 388, 700, 947
AvaI	CYCGRG	1 cut(s)	1187
AvaII	GGWCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	1019
BanII	GRGCYC	3 cut(s)	19, 1202, 1384
Bbv12I	GWGCWC	2 cut(s)	19, 1202
BbvI	GCAGC	1 cut(s)	1400
BccI	CCATC	2 cut(s)	293, 646
BceAI	ACGGC	4 cut(s)	1178, 1185, 1339, 1447
BciVI	GTATCC	1 cut(s)	743
BcnI	CCSGG	5 cut(s)	452, 796, 1089, 1188, 1189
BcoDI	GTCTC	2 cut(s)	598, 1043
BfaI	CTAG	4 cut(s)	12, 527, 611, 1173
BfmI	CTRYAG	2 cut(s)	153, 207
BfuI	GTATCC	1 cut(s)	743
BisI	GCNGC	3 cut(s)	972, 1232, 1389
BlsI	GCNGC	3 cut(s)	973, 1233, 1390
BmcAI	AGTACT	1 cut(s)	492
Bme1390I	CCNGG	5 cut(s)	452, 796, 1089, 1188, 1189
Bme18I	GGWCC	1 cut(s)	577
BmeT110I	CYCGRG	1 cut(s)	1187
BmgT120I	GGNCC	4 cut(s)	123, 577, 1091, 1352
BmiI	GGNNCC	4 cut(s)	148, 524, 1021, 1462
BmrFI	CCNGG	5 cut(s)	452, 796, 1089, 1188, 1189
BmrI	ACTGGG	1 cut(s)	1278
BmsI	GCATC	6 cut(s)	480, 556, 832, 844, 928, 1020
BmuI	ACTGGG	1 cut(s)	1278
BpmI	CTGGAG	1 cut(s)	162
BpuEI	CTTGAG	5 cut(s)	607, 613, 721, 1067, 1186
BpuMI	CCSGG	5 cut(s)	452, 796, 1089, 1188, 1189
BsaHI	GRCGYC	1 cut(s)	1136
BsaJI	CCNNGG	5 cut(s)	119, 199, 450, 795, 1187
BsaWI	WCCGGW	1 cut(s)	1010
Bse118I	RCCGGY	1 cut(s)	1138
Bse1I	ACTGG	2 cut(s)	145, 1273
BseDI	CCNNGG	5 cut(s)	119, 199, 450, 795, 1187
BseGI	GGATG	3 cut(s)	638, 847, 1007
BseNI	ACTGG	2 cut(s)	145, 1273
BseXI	GCAGC	1 cut(s)	1400
BshFI	GGCC	8 cut(s)	124, 455, 925, 945, 1092, 1142, 1286, 1354
BshNI	GGYRCC	1 cut(s)	1019
BsiHKAI	GWGCWC	2 cut(s)	19, 1202
BsiHKCI	CYCGRG	1 cut(s)	1187
BsiSI	CCGG	7 cut(s)	348, 452, 795, 1011, 1089, 1139, 1188
BslFI	GGGAC	3 cut(s)	238, 515, 700
BsmAI	GTCTC	2 cut(s)	598, 1043
BsmFI	GGGAC	3 cut(s)	238, 515, 700
BsmI	GAATGC	2 cut(s)	351, 615
BsnI	GGCC	8 cut(s)	124, 455, 925, 945, 1092, 1142, 1286, 1354
BsoBI	CYCGRG	1 cut(s)	1187
Bsp1286I	GDGCHC	3 cut(s)	19, 1202, 1384
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	92, 203, 805, 1477
BspACI	CCGC	8 cut(s)	469, 501, 580, 758, 971, 974, 1039, 1232
BspANI	GGCC	8 cut(s)	124, 455, 925, 945, 1092, 1142, 1286, 1354
BspLI	GGNNCC	4 cut(s)	148, 524, 1021, 1462
BspPI	GGATC	3 cut(s)	211, 800, 1472
BspT107I	GGYRCC	1 cut(s)	1019
BsrFI	RCCGGY	1 cut(s)	1138
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	145, 1273
BssAI	RCCGGY	1 cut(s)	1138
BssECI	CCNNGG	5 cut(s)	119, 199, 450, 795, 1187
BssMI	GATC	4 cut(s)	92, 203, 805, 1477
BssNI	GRCGYC	1 cut(s)	1136
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	5 cut(s)	252, 296, 968, 1375, 1474
BstACI	GRCGYC	1 cut(s)	1136
BstAPI	GCANNNNNTGC	1 cut(s)	1394
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	923, 943, 1140
BstDEI	CTNAG	2 cut(s)	404, 930
BstF5I	GGATG	3 cut(s)	638, 847, 1007
BstKTI	GATC	4 cut(s)	95, 206, 808, 1480
BstMAI	GTCTC	2 cut(s)	598, 1043
BstMBI	GATC	4 cut(s)	92, 203, 805, 1477
BstMWI	GCNNNNNNNGC	4 cut(s)	1098, 1388, 1394, 1440
BstNSI	RCATGY	2 cut(s)	838, 1101
BstSCI	CCNGG	5 cut(s)	450, 794, 1087, 1186, 1187
BstSFI	CTRYAG	2 cut(s)	153, 207
BstV1I	GCAGC	1 cut(s)	1400
BstX2I	RGATCY	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	203
BsuI	GTATCC	1 cut(s)	743
BsuRI	GGCC	8 cut(s)	124, 455, 925, 945, 1092, 1142, 1286, 1354
BtsCI	GGATG	3 cut(s)	638, 847, 1007
BtsIMutI	CAGTG	1 cut(s)	973
Cac8I	GCNNGC	3 cut(s)	923, 943, 1140
Cfr10I	RCCGGY	1 cut(s)	1138
Cfr13I	GGNCC	4 cut(s)	123, 577, 1091, 1352
Cfr9I	CCCGGG	1 cut(s)	1187
CseI	GACGC	1 cut(s)	1144
Csp6I	GTAC	3 cut(s)	4, 43, 491
CviQI	GTAC	3 cut(s)	4, 43, 491
DdeI	CTNAG	2 cut(s)	404, 930
DpnI	GATC	4 cut(s)	94, 205, 807, 1479
DpnII	GATC	4 cut(s)	92, 203, 805, 1477
DraI	TTTAAA	1 cut(s)	873
DrdI	GACNNNNNNGTC	1 cut(s)	674
DseDI	GACNNNNNNGTC	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	453
EciI	GGCGGA	2 cut(s)	773, 989
Ecl136II	GAGCTC	2 cut(s)	17, 1200
Eco130I	CCWWGG	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	1286
Eco24I	GRGCYC	3 cut(s)	19, 1202, 1384
Eco47I	GGWCC	1 cut(s)	577
Eco53kI	GAGCTC	2 cut(s)	17, 1200
Eco88I	CYCGRG	1 cut(s)	1187
EcoICRI	GAGCTC	2 cut(s)	17, 1200
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	3 cut(s)	19, 1202, 1384
ErhI	CCWWGG	1 cut(s)	199
FaqI	GGGAC	3 cut(s)	238, 515, 700
Fnu4HI	GCNGC	3 cut(s)	972, 1232, 1389
FokI	GGATG	3 cut(s)	625, 854, 994
FriOI	GRGCYC	3 cut(s)	19, 1202, 1384
Fsp4HI	GCNGC	3 cut(s)	972, 1232, 1389
FspBI	CTAG	4 cut(s)	12, 527, 611, 1173
GluI	GCNGC	3 cut(s)	972, 1232, 1389
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	8 cut(s)	124, 455, 925, 945, 1092, 1142, 1286, 1354
HapII	CCGG	7 cut(s)	348, 452, 795, 1011, 1089, 1139, 1188
HgaI	GACGC	1 cut(s)	1144
Hin1I	GRCGYC	1 cut(s)	1136
HincII	GTYRAC	1 cut(s)	958
HindII	GTYRAC	1 cut(s)	958
HinfI	GANTC	3 cut(s)	195, 705, 1155
HpaII	CCGG	7 cut(s)	348, 452, 795, 1011, 1089, 1139, 1188
HphI	GGTGA	6 cut(s)	26, 52, 71, 388, 700, 947
Hpy166II	GTNNAC	4 cut(s)	6, 217, 730, 958
Hpy188I	TCNGA	5 cut(s)	749, 785, 892, 1124, 1154
Hpy188III	TCNNGA	2 cut(s)	12, 700
Hpy8I	GTNNAC	4 cut(s)	6, 217, 730, 958
Hpy99I	CGWCG	1 cut(s)	1478
HpyAV	CCTTC	5 cut(s)	92, 281, 557, 936, 1419
HpyCH4III	ACNGT	5 cut(s)	252, 296, 968, 1375, 1474
HpyCH4V	TGCA	6 cut(s)	263, 845, 941, 1388, 1443, 1497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1098, 1388, 1394, 1440
HpyF3I	CTNAG	2 cut(s)	404, 930
Hsp92I	GRCGYC	1 cut(s)	1136
KroI	GCCGGC	1 cut(s)	1138
KroNI	GCCGGC	1 cut(s)	1140
Kzo9I	GATC	4 cut(s)	92, 203, 805, 1477
LmnI	GCTCC	3 cut(s)	333, 1197, 1460
Lsp1109I	GCAGC	1 cut(s)	1400
LweI	GCATC	6 cut(s)	480, 556, 832, 844, 928, 1020
MaeI	CTAG	4 cut(s)	12, 527, 611, 1173
MaeIII	GTNAC	2 cut(s)	1003, 1331
MalI	GATC	4 cut(s)	94, 205, 807, 1479
MboI	GATC	4 cut(s)	92, 203, 805, 1477
MboII	GAAGA	4 cut(s)	65, 68, 172, 1306
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	3 cut(s)	19, 1202, 1384
MluCI	AATT	5 cut(s)	418, 790, 848, 900, 1444
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	4 cut(s)	808, 819, 1132, 1147
MroNI	GCCGGC	1 cut(s)	1138
MseI	TTAA	5 cut(s)	137, 476, 681, 872, 1341
MslI	CAYNNNNRTG	2 cut(s)	155, 833
MspI	CCGG	7 cut(s)	348, 452, 795, 1011, 1089, 1139, 1188
MspR9I	CCNGG	5 cut(s)	452, 796, 1089, 1188, 1189
Mva1269I	GAATGC	2 cut(s)	351, 615
MwoI	GCNNNNNNNGC	4 cut(s)	1098, 1388, 1394, 1440
NaeI	GCCGGC	1 cut(s)	1140
NciI	CCSGG	5 cut(s)	452, 796, 1089, 1188, 1189
NdeII	GATC	4 cut(s)	92, 203, 805, 1477
NgoMIV	GCCGGC	1 cut(s)	1138
NlaIV	GGNNCC	4 cut(s)	148, 524, 1021, 1462
NmeAIII	GCCGAG	2 cut(s)	100, 734
NmuCI	GTSAC	2 cut(s)	1003, 1331
NspI	RCATGY	2 cut(s)	838, 1101
OliI	CACNNNNGTG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	1286
PciI	ACATGT	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	1175
PctI	GAATGC	2 cut(s)	351, 615
PdiI	GCCGGC	1 cut(s)	1140
PfeI	GAWTC	2 cut(s)	705, 1155
PflMI	CCANNNNNTGG	1 cut(s)	1487
PkrI	GCNGC	3 cut(s)	973, 1233, 1390
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PscI	ACATGT	1 cut(s)	834
Psp124BI	GAGCTC	2 cut(s)	19, 1202
PspN4I	GGNNCC	4 cut(s)	148, 524, 1021, 1462
PspPI	GGNCC	4 cut(s)	123, 577, 1091, 1352
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	3 cut(s)	5, 44, 492
RsaNI	GTAC	3 cut(s)	4, 43, 491
RseI	CAYNNNNRTG	2 cut(s)	155, 833
SacI	GAGCTC	2 cut(s)	19, 1202
SaqAI	TTAA	5 cut(s)	137, 476, 681, 872, 1341
SatI	GCNGC	3 cut(s)	972, 1232, 1389
Sau3AI	GATC	4 cut(s)	92, 203, 805, 1477
Sau96I	GGNCC	4 cut(s)	123, 577, 1091, 1352
ScaI	AGTACT	1 cut(s)	492
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	5 cut(s)	452, 796, 1089, 1188, 1189
SduI	GDGCHC	3 cut(s)	19, 1202, 1384
SfaNI	GCATC	6 cut(s)	480, 556, 832, 844, 928, 1020
SfcI	CTRYAG	2 cut(s)	153, 207
SinI	GGWCC	1 cut(s)	577
SmaI	CCCGGG	1 cut(s)	1189
SmiMI	CAYNNNNRTG	2 cut(s)	155, 833
SmlI	CTYRAG	5 cut(s)	622, 628, 700, 1082, 1201
SmoI	CTYRAG	5 cut(s)	622, 628, 700, 1082, 1201
Sse9I	AATT	5 cut(s)	418, 790, 848, 900, 1444
SseBI	AGGCCT	1 cut(s)	1286
SsiI	CCGC	8 cut(s)	469, 501, 580, 758, 971, 974, 1039, 1232
SspI	AATATT	2 cut(s)	1253, 1300
SspMI	CTAG	4 cut(s)	12, 527, 611, 1173
SstI	GAGCTC	2 cut(s)	19, 1202
StuI	AGGCCT	1 cut(s)	1286
StyD4I	CCNGG	5 cut(s)	450, 794, 1087, 1186, 1187
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	5 cut(s)	252, 296, 968, 1375, 1474
TaqI	TCGA	2 cut(s)	897, 1476
TasI	AATT	5 cut(s)	418, 790, 848, 900, 1444
TatI	WGTACW	2 cut(s)	3, 490
TauI	GCSGC	2 cut(s)	974, 1234
TfiI	GAWTC	2 cut(s)	705, 1155
Tru1I	TTAA	5 cut(s)	137, 476, 681, 872, 1341
Tru9I	TTAA	5 cut(s)	137, 476, 681, 872, 1341
TscAI	CASTG	1 cut(s)	973
TseFI	GTSAC	2 cut(s)	1003, 1331
TseI	GCWGC	1 cut(s)	1388
Tsp45I	GTSAC	2 cut(s)	1003, 1331
TspDTI	ATGAA	6 cut(s)	59, 501, 505, 712, 1089, 1415
TspGWI	ACGGA	1 cut(s)	1215
TspMI	CCCGGG	1 cut(s)	1187
TspRI	CASTG	1 cut(s)	973
Van91I	CCANNNNNTGG	1 cut(s)	1487
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	1 cut(s)	790
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	2 cut(s)	838, 1101
XmaI	CCCGGG	1 cut(s)	1187
XspI	CTAG	4 cut(s)	12, 527, 611, 1173
ZrmI	AGTACT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.