RchiOBHm_Chr1g0384121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013572
Physical Location & Seq
Forward (+)
68144531 .. 68145975
1445 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGGCCAAGTTCAACGAGGTGCAGAAGAAGAAGAGAGCGCAGAACCAGGAGAAGAAGAGAAGGATTCACGGCGACCCAGTCAGTGGCAAGCTTCATCTGAAGCAGCAACCCGTCTCCATCTCCGGCAAGCGCAAGCGGAAGCTCGAAAAAAAATGGCGGAGGGACCAGAAAGAGGCTGTGGAGAAGGGCCTGATTACCATGGAAGATGTCGAAATGGCTGCAGCTGATGATGATGAAGAATCTCTAGGGACGAAGAAAGGTTCAAAGAAGTTCCACATGAAGAAGAGCATCAAGCTTAAGCAAGGAAAGCACAAAGGTAAGAAGAAAGGAAAATCTTCTAAGTCTGCTTCTGCTGCTCAAGCTTCAGTGGATGTAATGGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.49

Weight (kDa)

10.23

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08580
fragaria_vesca FvH4_7g33930
malus_domestica MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica Prupe.2G325600_v2.0.a1
pyrus_communis pycom01g24370 pycom07g28060
rosa_chinensis RchiOBHm_Chr1g0384121
rosa_laevigata RLG00000026070
rosa_multiflora Rmu_sc0005139.1_g000017
rosa_roxburghii Rroxscaffold_4G00276970
rosa_rugosa Rorug01G0445000 Rorug01G0445100
rosa_samantha Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana Rw1G040220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 2 cut(s) 136, 157
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 119, 348
AfiI CCNNNNNNNGG 2 cut(s) 83, 172
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 2 cut(s) 13, 264
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 5 cut(s) 91, 142, 224, 295, 362
AluI AGCT 5 cut(s) 91, 142, 224, 295, 362
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 3, 187
ApeKI GCWGC 4 cut(s) 103, 218, 221, 353
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 2 cut(s) 40, 132
AspS9I GGNCC 2 cut(s) 163, 187
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 4 cut(s) 115, 205, 233, 340
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 4 cut(s) 104, 219, 222, 354
BlsI GCNGC 4 cut(s) 105, 220, 223, 355
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 187
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 172
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 83, 172
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 4 cut(s) 115, 205, 233, 340
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 2 cut(s) 5, 189
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 176, 262
BslI CCNNNNNNNGG 2 cut(s) 83, 172
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 176, 262
BsnI GGCC 2 cut(s) 5, 189
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 136, 157
BspANI GGCC 2 cut(s) 5, 189
BspLI GGNNCC 1 cut(s) 164
BspMAI CTGCAG 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 296
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 3 cut(s) 26, 50, 278
BstAFI CTTAAG 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 89, 128, 134
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 376
BstHHI GCGC 2 cut(s) 40, 132
BstMAI GTCTC 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 307, 353, 359
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 4 cut(s) 115, 205, 233, 340
BsuRI GGCC 2 cut(s) 5, 189
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 88, 372
Cac8I GCNNGC 3 cut(s) 89, 128, 134
CfoI GCGC 2 cut(s) 40, 132
Cfr13I GGNCC 2 cut(s) 163, 187
CviAII CATG 2 cut(s) 199, 277
CviJI RGCY 9 cut(s) 5, 91, 142, 176, 189, 218, 224, 295, 362
CviKI_1 RGCY 9 cut(s) 5, 91, 142, 176, 189, 218, 224, 295, 362
DdeI CTNAG 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 26, 50, 278
EarI CTCTTC 3 cut(s) 26, 50, 278
EciI GGCGGA 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 119, 348
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 2 cut(s) 202, 280
FaiI YATR 2 cut(s) 200, 278
FaqI GGGAC 2 cut(s) 176, 262
FatI CATG 2 cut(s) 198, 276
Fnu4HI GCNGC 4 cut(s) 104, 219, 222, 354
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 4 cut(s) 104, 219, 222, 354
FspBI CTAG 1 cut(s) 245
GlaI GCGC 2 cut(s) 39, 131
GluI GCNGC 4 cut(s) 104, 219, 222, 354
HaeIII GGCC 2 cut(s) 5, 189
HapII CCGG 1 cut(s) 123
HhaI GCGC 2 cut(s) 40, 132
Hin1II CATG 2 cut(s) 202, 280
Hin6I GCGC 2 cut(s) 38, 130
HinP1I GCGC 2 cut(s) 38, 130
HindIII AAGCTT 3 cut(s) 89, 293, 360
HinfI GANTC 2 cut(s) 64, 239
HpaII CCGG 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 54, 178
HpyCH4V TGCA 2 cut(s) 22, 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 353, 359
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 2 cut(s) 202, 280
HspAI GCGC 2 cut(s) 38, 130
LguI GCTCTTC 1 cut(s) 278
LpnPI CCDG 6 cut(s) 32, 59, 90, 136, 179, 203
Lsp1109I GCAGC 4 cut(s) 115, 205, 233, 340
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 10, 153, 166
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 334
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 224
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 307, 353, 359
NcoI CCATGG 1 cut(s) 198
NlaIII CATG 2 cut(s) 202, 280
NlaIV GGNNCC 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 64, 239
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 4 cut(s) 105, 220, 223, 355
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 163, 187
PstI CTGCAG 1 cut(s) 223
PsyI GACNNNGTC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 4 cut(s) 104, 219, 222, 354
Sau96I GGNCC 2 cut(s) 163, 187
ScrFI CCNGG 1 cut(s) 47
SetI ASST 8 cut(s) 21, 93, 144, 226, 262, 297, 319, 364
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 2 cut(s) 296, 357
SmoI CTYRAG 2 cut(s) 296, 357
SsiI CCGC 2 cut(s) 136, 157
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 2 cut(s) 144, 210
TfiI GAWTC 2 cut(s) 64, 239
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 88, 372
TseI GCWGC 4 cut(s) 103, 218, 221, 353
TspDTI ATGAA 3 cut(s) 83, 249, 293
TspRI CASTG 2 cut(s) 88, 372
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.