Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0017729

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAAATGAAAGATGGAGAACAGCCTGACAATGCGAATTGCTCTCCTGAGGGGTTAGTCCGGCAAGTAAAGATGGCAACCAAGAGTGCTGGAATTGAACTTGCAGGAGAGAGTGCACTGGAGAGGTATGATTCTGGTGCATATGGACAGAGATTGTTCGAAGGGGACAACTGGTGGAACATGGTTGAATTTGTGAAAGGCATGGCTGAAGGTGGCCGGAATGAAAGACTGTCAGAGTGCGACTCCACTGGCACCGACCTTTTTGTCCGTTTTATCAAAGAGAAGAATGTCCAGGAAGAAAAGGAAACTGTTCTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

106

Amino Acids

11.88

Weight (kDa)

4.57

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 50	6.3e-16	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017729)

Species	Orthologous Gene IDs
malus_domestica	MD06G1044200.v1.1
pyrus_communis	pycom06g03730
rosa_chinensis	RchiOBHm_Chr0c22g0500661 RchiOBHm_Chr7g0206591 RchiOBHm_Chr7g0207331 RchiOBHm_Chr7g0207681
rosa_multiflora	Rmu_co8257627.1_g000001 Rmu_sc0004987.1_g000004
rosa_rugosa	Rorug06G0115900
rosa_samantha	Rh7AG231300 Rh7AG232300 Rh7CG245000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	98, 188
AjnI	CCWGG	1 cut(s)	291
Alw21I	GWGCWC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	309
AsuII	TTCGAA	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	2 cut(s)	8, 67
BciT130I	CCWGG	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpmI	CTGGAG	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	123, 176, 253
Bse21I	CCTNAGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	123, 176, 253
BseSI	GKGCMC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	61, 217
BslFI	GGGAC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	251
BsrI	ACTGG	3 cut(s)	123, 176, 253
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	231, 310
BstBI	TTCGAA	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	116, 246
CviAII	CATG	2 cut(s)	181, 202
CviJI	RGCY	3 cut(s)	25, 206, 216
CviKI_1	RGCY	3 cut(s)	25, 206, 216
DdeI	CTNAG	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	228
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	184, 205
FaiI	YATR	5 cut(s)	129, 142, 144, 182, 203
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	180, 201
FauNDI	CATATG	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	61, 217
Hin1II	CATG	2 cut(s)	184, 205
HinfI	GANTC	2 cut(s)	131, 242
HpaII	CCGG	2 cut(s)	61, 217
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	155, 203
HpyCH4III	ACNGT	2 cut(s)	231, 310
HpyCH4V	TGCA	3 cut(s)	104, 116, 140
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	184, 205
MboII	GAAGA	2 cut(s)	295, 308
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	3 cut(s)	37, 93, 188
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	43, 117
MroXI	GAANNNNTTC	1 cut(s)	309
MspI	CCGG	2 cut(s)	61, 217
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
NdeI	CATATG	1 cut(s)	142
NlaIII	CATG	2 cut(s)	184, 205
NlaIV	GGNNCC	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	291
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	3 cut(s)	128, 214, 261
SfuI	TTCGAA	1 cut(s)	159
Sse9I	AATT	3 cut(s)	37, 93, 188
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	231, 310
TaqI	TCGA	1 cut(s)	159
TasI	AATT	3 cut(s)	37, 93, 188
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	2 cut(s)	123, 253
TspDTI	ATGAA	2 cut(s)	23, 237
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	123, 253
VneI	GTGCAC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.