RchiOBHm_Chr1g0316491

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
3912089 .. 3912362
274 bp
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UTR
Exon/CDS
Intron
PRQ54691

Sequence Viewer

Length: 162 bp
ATGAGTTATGCACTTTTTAAGTGTAATCAGTTCGATGCATATTGTTTTTGGCTGCAGGAGTCATTTGTTTTTAGCGAGCTAAGAAGTGGGTTTTTGAATTGCAAAGACAAGGTACATTTGAAAAGTTTTGGAGTGACCACTTTTTGGATTGATATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

6.31

Weight (kDa)

6.51

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 2 cut(s) 97, 121
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmsI GCATC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 113
CviJI RGCY 2 cut(s) 52, 79
CviKI_1 RGCY 2 cut(s) 52, 79
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 80
EcoT22I ATGCAT 1 cut(s) 40
FaiI YATR 3 cut(s) 9, 40, 155
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
FspEI CC 8 cut(s) 34, 41, 72, 73, 95, 114, 130, 151
GluI GCNGC 1 cut(s) 53
HinfI GANTC 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 11, 38, 55, 102
HpyF3I CTNAG 1 cut(s) 80
LpnPI CCDG 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 133
MluCI AATT 1 cut(s) 97
MlyI GAGTC 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 40
MseI TTAA 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 57
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 53
SchI GAGTC 1 cut(s) 68
SetI ASST 2 cut(s) 81, 114
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 53
SgeI CNNG 3 cut(s) 68, 88, 121
Sse9I AATT 1 cut(s) 97
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 97
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.