Rroxscaffold_7G00179180

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
18807939 .. 18808546
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179180.1

Sequence Viewer

Length: 171 bp
ATGGCCCGGCTCCCATGTATTACCGCGGTGCAGCTGCAGCTGTTGGTCTATGATATTACAAGCATGGAGTCATTTGTTTTTAGCCAACTAAGAAGTGGGTTTTTGAATTGCAAAGACAAGGTACATTTGAAAAGTTTTGGAGTGACCACTTTTTGGATTGATATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.41

Weight (kDa)

7.81

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 153
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 26
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 2 cut(s) 106, 130
AluBI AGCT 2 cut(s) 34, 40
AluI AGCT 2 cut(s) 34, 40
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 31, 34, 37
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 7
BbvI GCAGC 3 cut(s) 21, 43, 49
BcnI CCSGG 1 cut(s) 7
BfmI CTRYAG 1 cut(s) 35
BisI GCNGC 3 cut(s) 32, 35, 38
BlsI GCNGC 3 cut(s) 33, 36, 39
Bme1390I CCNGG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 21, 43, 49
BsgI GTGCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 153
BsnI GGCC 1 cut(s) 5
BspACI CCGC 2 cut(s) 24, 26
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 35
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 3 cut(s) 21, 43, 49
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 15, 64
CviJI RGCY 5 cut(s) 5, 10, 34, 40, 84
CviKI_1 RGCY 5 cut(s) 5, 10, 34, 40, 84
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 1 cut(s) 89
FaeI CATG 2 cut(s) 18, 67
FaiI YATR 4 cut(s) 16, 51, 65, 164
FatI CATG 2 cut(s) 14, 63
Fnu4HI GCNGC 3 cut(s) 32, 35, 38
Fsp4HI GCNGC 3 cut(s) 32, 35, 38
GluI GCNGC 3 cut(s) 32, 35, 38
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 7
Hin1II CATG 2 cut(s) 18, 67
HinfI GANTC 1 cut(s) 68
HpaII CCGG 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 31, 37, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 2 cut(s) 18, 67
KspI CCGCGG 1 cut(s) 27
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 1 cut(s) 20
Lsp1109I GCAGC 3 cut(s) 21, 43, 49
MaeIII GTNAC 1 cut(s) 142
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 77
MspA1I CMGCKG 3 cut(s) 26, 34, 40
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 7
NlaIII CATG 2 cut(s) 18, 67
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 153
PkrI GCNGC 3 cut(s) 33, 36, 39
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 39
PvuII CAGCTG 2 cut(s) 34, 40
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SacII CCGCGG 1 cut(s) 27
SatI GCNGC 3 cut(s) 32, 35, 38
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 7
SetI ASST 3 cut(s) 36, 42, 123
SfcI CTRYAG 1 cut(s) 35
Sfr303I CCGCGG 1 cut(s) 27
SgeI CNNG 7 cut(s) 18, 19, 27, 37, 72, 76, 130
SgrBI CCGCGG 1 cut(s) 27
Sse9I AATT 1 cut(s) 106
SsiI CCGC 2 cut(s) 24, 26
StyD4I CCNGG 1 cut(s) 5
TasI AATT 1 cut(s) 106
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 3 cut(s) 31, 34, 37
Tsp45I GTSAC 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.