RchiOBHm_Chr7g0208911

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
26291559 .. 26292957
1399 bp
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UTR
Exon/CDS
Intron
PRQ18697

Sequence Viewer

Length: 165 bp
ATGGAGTCATTTGTTTTTAGCGAGCTAAGAAGTGGGTTTTTGAATTGCAAAGACAAGGCCGAGTTGGAAGAGAAGAGAAAAGTAGGGACTGAGAAAAGTAGTCCTCACTTAGGAAGCAGAGATCTATCAGGGCAGAAATGGTTAGGAAGTAGAGACGATACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.12

Weight (kDa)

6.56

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 147
AoxI GGCC 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 147
BglII AGATCT 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 81
BshFI GGCC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 121
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 82
BssMI GATC 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 63, 68
BstBAI YACGTR 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 3 cut(s) 26, 90, 109
BstENI CCTNNNNNAGG 1 cut(s) 108
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 121
BstSNI TACGTA 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 23
CviJI RGCY 2 cut(s) 25, 59
CviKI_1 RGCY 2 cut(s) 25, 59
DdeI CTNAG 3 cut(s) 26, 90, 109
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 63, 68
EarI CTCTTC 2 cut(s) 63, 68
Eco105I TACGTA 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 147
FaqI GGGAC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 59
HinfI GANTC 1 cut(s) 5
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 48
HpyF3I CTNAG 3 cut(s) 26, 90, 109
HpySE526I ACGT 1 cut(s) 161
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 1 cut(s) 114
MaeII ACGT 1 cut(s) 161
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 80, 85
MflI RGATCY 1 cut(s) 121
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 1 cut(s) 114
NdeII GATC 1 cut(s) 121
NmeAIII GCCGAG 1 cut(s) 85
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 162
PsuI RGATCY 1 cut(s) 121
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 14
SetI ASST 2 cut(s) 27, 164
SgeI CNNG 4 cut(s) 34, 67, 73, 141
SnaBI TACGTA 1 cut(s) 162
Sse9I AATT 1 cut(s) 43
TaiI ACGT 1 cut(s) 164
TasI AATT 1 cut(s) 43
XagI CCTNNNNNAGG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.