Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0018147

Physical Location & Seq

Genomic Coordinates Forward (+)

3901147 .. 3905350

Gene Structure 4204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG020900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATAGGTGGAAGGATGGGTTCCTACTATAAGGAGCATAGAATTCTTCCCCACTTCCAGCCTCTTCAAGAACTAGAGAAGATGACCAATATTATTCTTCAAGCTCTAAAAATTACTGGACAAAGAGGCATTATCAACAAAGGCTGGGTACAATCAAATGATTCTGTGTACTTAGTGGACAATTGCCCCCATGATGACTCTTCCTCGGATGCTCTGTTGTGTACAGATTTTGCTGCACTGGAGTCATTTGTTTTTAGCGAGCTAAGAAGTGGGTTTTTGAATTGCAAAGACAAGGCCGAGTTGGAAGAGAAGAGAAAAGTAGGGACTGAGATAAAAGAGATTTTTTACAGTAGGCAAGTTTGCTATGCTGAATATAAGAAATCTAAGGATTTAGAGCTGATAAAAATAGAGCGAAACTTAGTTGAGCTAGAGAAGATCGTGACTGATGAGTCAGGAGTCAATGAACTGTGCAAAAGACGCATAGAGATGGAGAAGAGACTAAAAAATCTTGATGTCTTCTGGAGAAGGAGTCTAGTGGTGTCTCCCTTCTCAAAGAAGCTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

188

Amino Acids

21.93

Weight (kDa)

8.52

Isoelectric Point (pI)

61.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018147)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316491 RchiOBHm_Chr5g0052151 RchiOBHm_Chr7g0208161 RchiOBHm_Chr7g0208911
rosa_roxburghii	Rroxscaffold_3G00257790 Rroxscaffold_7G00179180
rosa_rugosa	Rorug04G0211200 Rorug04G0211300
rosa_samantha	Rh1AG020900 Rh2DG054400 Rh5AG356800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	3 cut(s)	150, 170, 223
AgsI	TTSAA	3 cut(s)	68, 101, 280
AluBI	AGCT	5 cut(s)	104, 262, 397, 427, 559
AluI	AGCT	5 cut(s)	104, 262, 397, 427, 559
Alw26I	GTCTC	2 cut(s)	490, 546
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	10, 481
BcoDI	GTCTC	2 cut(s)	490, 546
BfaI	CTAG	3 cut(s)	74, 428, 533
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	22
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	2 cut(s)	260, 541
Bpu10I	CCTNAGC	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bse1I	ACTGG	2 cut(s)	121, 243
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	21, 214
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	121, 243
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	490, 546
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	435
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	121, 243
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	350, 468
Bst6I	CTCTTC	5 cut(s)	69, 205, 300, 305, 488
BstAUI	TGTACA	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	6 cut(s)	172, 263, 327, 384, 418, 560
BstF5I	GGATG	2 cut(s)	21, 214
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	2 cut(s)	490, 546
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	21, 214
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	260
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	149, 169, 222
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	8 cut(s)	61, 104, 144, 262, 296, 397, 427, 559
CviKI_1	RGCY	8 cut(s)	61, 104, 144, 262, 296, 397, 427, 559
CviQI	GTAC	3 cut(s)	149, 169, 222
DdeI	CTNAG	6 cut(s)	172, 263, 327, 384, 418, 560
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
Eam1104I	CTCTTC	5 cut(s)	69, 205, 300, 305, 488
EarI	CTCTTC	5 cut(s)	69, 205, 300, 305, 488
EcoRI	GAATTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	194
FaiI	YATR	6 cut(s)	30, 39, 192, 366, 375, 482
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	2 cut(s)	28, 221
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	3 cut(s)	74, 428, 533
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	260, 541
HaeIII	GGCC	1 cut(s)	296
HgaI	GACGC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	6 cut(s)	161, 197, 242, 449, 456, 529
Hpy166II	GTNNAC	3 cut(s)	169, 178, 222
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	5 cut(s)	68, 439, 453, 509, 520
Hpy8I	GTNNAC	3 cut(s)	169, 178, 222
HpyAV	CCTTC	3 cut(s)	6, 519, 556
HpyCH4III	ACNGT	2 cut(s)	350, 468
HpyCH4V	TGCA	3 cut(s)	236, 285, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	477
HpyF3I	CTNAG	6 cut(s)	172, 263, 327, 384, 418, 560
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	71, 102, 130, 224, 438, 505
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	3 cut(s)	74, 428, 533
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MfeI	CAATTG	1 cut(s)	181
MluCI	AATT	4 cut(s)	42, 111, 181, 280
MlyI	GAGTC	5 cut(s)	191, 251, 458, 465, 538
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	3 cut(s)	72, 119, 214
MslI	CAYNNNNRTG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	477
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	22
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	5 cut(s)	191, 250, 457, 464, 537
PpsI	GAGTC	5 cut(s)	191, 250, 457, 464, 537
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	22
RsaI	GTAC	3 cut(s)	150, 170, 223
RsaNI	GTAC	3 cut(s)	149, 169, 222
RseI	CAYNNNNRTG	1 cut(s)	485
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	435
SchI	GAGTC	5 cut(s)	191, 251, 458, 465, 538
SetI	ASST	7 cut(s)	10, 106, 264, 399, 429, 561, 566
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	4 cut(s)	42, 111, 181, 280
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	3 cut(s)	74, 428, 533
TaaI	ACNGT	2 cut(s)	350, 468
TasI	AATT	4 cut(s)	42, 111, 181, 280
TatI	WGTACW	2 cut(s)	168, 221
TfiI	GAWTC	1 cut(s)	161
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	477
TspRI	CASTG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	42
XspI	CTAG	3 cut(s)	74, 428, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.