Rroxscaffold_3G00257790

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018147
Physical Location & Seq
Forward (+)
52086886 .. 52093838
6953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257790.1

Sequence Viewer

Length: 489 bp
ATGATAGAGGGATTGATCGGACTAAAGCATTCTACTAAAGCAAATCCAACTTTAATAATGTTCTTGGCTGGAAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTAGAGACCGAGAAAAGTAGTCCTCACTTAGGAAGCGAGAGATCTAGCGGGCGAGAAATTGTTAGGAAGCGAGAGACGATACGTAGTCTACGGAAGGCAAGCGAGAAAACAAATAGTGAAGTCTTTGACCATTGCGCAATAGATACACTGCTGATTTCTCATGGGACAAGTACACTCTTCATGAAGGACCTTTTGAGGAGGTTGGAGCAACCGCAACAAGTCTTCTCTAAACCCAAATCGATTAGACAAAAAGAAAAGAAAACCAAAACGATTCCATCAACAACCCATGAGGTCCCTGCTCAAAACCTTCTTCCAAAAACCCCGTACCATCAAATCCCAATCCCGTGCCCAAACGACTTCATGCCTAATCCACACCGCCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

162

Amino Acids

18.52

Weight (kDa)

9.79

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 238
AccI GTMKAC 1 cut(s) 190
AciI CCGC 3 cut(s) 150, 314, 478
AfaI GTAC 2 cut(s) 274, 428
AfiI CCNNNNNNNGG 1 cut(s) 131
Alw26I GTCTC 2 cut(s) 101, 170
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 289, 394
AvaII GGWCC 2 cut(s) 289, 394
BaeGI GKGCMC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 316
BccI CCATC 2 cut(s) 385, 438
BcoDI GTCTC 2 cut(s) 101, 170
BfaI CTAG 1 cut(s) 147
BglII AGATCT 1 cut(s) 143
Bme18I GGWCC 2 cut(s) 289, 394
BmgT120I GGNCC 2 cut(s) 289, 394
BmiI GGNNCC 1 cut(s) 396
BpiI GAAGAC 1 cut(s) 316
Bsa29I ATCGAT 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 232
BseCI ATCGAT 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 452
BshVI ATCGAT 1 cut(s) 341
BslFI GGGAC 2 cut(s) 280, 380
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 101, 170
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 280, 380
BsmI GAATGC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 2 cut(s) 15, 143
BspACI CCGC 3 cut(s) 150, 314, 478
BspDI ATCGAT 1 cut(s) 341
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 396
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 232
BssMI GATC 2 cut(s) 15, 143
Bst6I CTCTTC 3 cut(s) 84, 89, 284
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 152, 202
BstDEI CTNAG 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 2 cut(s) 18, 146
BstMAI GTCTC 2 cut(s) 101, 170
BstMBI GATC 2 cut(s) 15, 143
BstSLI GKGCMC 1 cut(s) 452
BstSNI TACGTA 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
Bsu15I ATCGAT 1 cut(s) 341
BsuTUI ATCGAT 1 cut(s) 341
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 152, 202
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 289, 394
ClaI ATCGAT 1 cut(s) 341
Csp6I GTAC 2 cut(s) 273, 427
CviAII CATG 4 cut(s) 263, 283, 389, 463
CviJI RGCY 2 cut(s) 68, 80
CviKI_1 RGCY 2 cut(s) 68, 80
CviQI GTAC 2 cut(s) 273, 427
DdeI CTNAG 1 cut(s) 130
DpnI GATC 2 cut(s) 17, 145
DpnII GATC 2 cut(s) 15, 143
Eam1104I CTCTTC 3 cut(s) 84, 89, 284
EarI CTCTTC 3 cut(s) 84, 89, 284
Eco105I TACGTA 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 289, 394
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoO109I RGGNCCY 2 cut(s) 289, 394
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 4 cut(s) 266, 286, 392, 466
FaiI YATR 4 cut(s) 264, 284, 390, 464
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 2 cut(s) 280, 380
FatI CATG 4 cut(s) 262, 282, 388, 462
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 190
FspBI CTAG 1 cut(s) 147
FspI TGCGCA 1 cut(s) 238
GlaI GCGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 239
Hin1II CATG 4 cut(s) 266, 286, 392, 466
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 191, 275
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 2 cut(s) 191, 275
HpyAV CCTTC 3 cut(s) 190, 280, 419
HpyCH4IV ACGT 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 4 cut(s) 266, 286, 392, 466
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 15, 143
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 2 cut(s) 54, 411
MaeI CTAG 1 cut(s) 147
MaeII ACGT 1 cut(s) 184
MalI GATC 2 cut(s) 17, 145
MboI GATC 2 cut(s) 15, 143
MboII GAAGA 5 cut(s) 101, 106, 271, 316, 404
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 1 cut(s) 159
MmeI TCCRAC 2 cut(s) 71, 285
MnlI CCTC 4 cut(s) 135, 291, 294, 385
MseI TTAA 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 28
NdeII GATC 2 cut(s) 15, 143
NlaIII CATG 4 cut(s) 266, 286, 392, 466
NlaIV GGNNCC 1 cut(s) 396
NsbI TGCGCA 1 cut(s) 238
PagI TCATGA 1 cut(s) 282
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 373
Ppu21I YACGTR 1 cut(s) 185
PpuMI RGGWCCY 2 cut(s) 289, 394
Psp5II RGGWCCY 2 cut(s) 289, 394
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 2 cut(s) 289, 394
PspPPI RGGWCCY 2 cut(s) 289, 394
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 2 cut(s) 274, 428
RsaNI GTAC 2 cut(s) 273, 427
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 2 cut(s) 15, 143
Sau96I GGNCC 2 cut(s) 289, 394
SduI GDGCHC 1 cut(s) 452
SetI ASST 5 cut(s) 187, 294, 305, 396, 411
SinI GGWCC 2 cut(s) 289, 394
SnaBI TACGTA 1 cut(s) 185
Sse9I AATT 1 cut(s) 159
SsiI CCGC 3 cut(s) 150, 314, 478
SspMI CTAG 1 cut(s) 147
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 341
TaqII GACCGA 1 cut(s) 125
TasI AATT 1 cut(s) 159
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 255
TspDTI ATGAA 3 cut(s) 271, 299, 451
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 289, 394
XagI CCTNNNNNAGG 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 190
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.