RchiOBHm_Chr1g0318481

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010028
Physical Location & Seq
Forward (+)
5983525 .. 5994386
10862 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54877

Sequence Viewer

Length: 3294 bp
ATGGCGTGTATAAAGGGGGTGAACAGATCGGCGTCGGTGGCGGTCGCGCCGGACGCTCCGTACATGGCGGCCGGGACGATGGCGGGAGCGGTGGATCTGTCCTTCAGCTCCTCCGCGAATATCGAGATCTTCAAGCTCGATTTACAGTCGGACGATCGTGATCTTCCTGTAGTGGGAGAGTCCACGAGCTCCGAGAGATTCAACAGGTTATCGTGGTCCAAGCCCGCTGCTGGATCAGGCTCGCAAGACTTTGGCCTTGGGCTCATCGCCGGTGGACTCGTCGATGGGACTATTGATATCTGGAATCCGCTCACTCTGATCCGTTCTGAGACGGGGGAAAATGCTTCCGTTGAGCGTCTGACAAGACATAAGGGGCCTGTTCGTGGTCTTGAATTTAATGCAATCGCCCCAAATTTACTTGCATCTGGGGCCGACGATGGTGAAATTTGCATCTGGGACTTGGCTAATCCTACTGAGCCAACTCATTTTCCGCCTCTTAGGGGAAGTGGTTCTGCTGCCCAGGGTGAGATTTCATTTTTATCTTGGAATAGCAAGGTCCAACATATATTGGCATCCTCTTCGTATAATGGGACAACTGTGATTTGGGACCTAAAAAAGCAAAAGCCAGTGATAAGTTTTGCGGATTCAGTTAGAAGACGGTGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTTGTTGTTGCATCTGATGAAGATGGTTCACCTTCTCTCAGGCTCTGGGATATGCGTAATATATTGTCACCAGTTAAAGAGTTTGTGGGGCACACTAAAGGTGTAATTGCAATGTCATGGTGTCCTAATGACAGCTCTTATCTGCTAACGTGTGCCAAGGACAATCGAACTATTTGTTGGGACACAGTTTCTGCAGAGATTGTATGTGAATTGCCTGCAGGAACCAACTGGAATTTCGATGTGCATTGGTATCCGAAAGTACCTGGAGTGATATCAGCGTCTTCATTTGATGGAAAAATTGGAATTTATAATATTGAGGGTTGCAGTAGATATGGTGTGGGGGAGAGCGACTTTGGTGCTGGACCTCTCAGAGCTCCAAAATGGTATAAGCGCCCAGCTGGAGCATCTTTTGGTTTTGGAGGCAAGATTGTGTCCTTTCACCCTAGTTCATCTGGTGTTTCAGAGGTTTATGTGCACAGCTTGGTTACTGAACAAAGTTTGGTGGATCGCTCATCTGAATTTGAAAGTGCAATACAAAATGGGGAAAGGTCTTCACTCCGGGCTTTATGTGACAAGAAAGCACAGGAGTCTGAGTCTGCAGATGACCAGGAAACATGGGGCTTGTTAAGGGTTATGTTTGAAGATGATGGGACTGCAAGGACAAACCTGATCACACATCTTGGTTTCAGTGTACCTGAGGAAACAAAAGAAACAGTTCAAGATGGTCTATCAGCGGAAGTCAGTGCACCTGGGCTTGAGGATTCAACAACTGATAAAGCTGGTTTGGGTGCTGAGAAGGAAACTACAATTTTTCCTTCTGACAATGGAGAAGATTTCTTTAACAATCTTCCTAGTCCTAAAGCTGACACTCCTCATTCAACCTCTGGTGACAAATTTGTTGCGGCGGATACAGTTCCTATTACAGACCAAGTTCAAGAAGAACCTGATGAACCGGAAGAGAGCGCCGATCCTTCATTTGATGAATCAGTTCAACATGCTTTAGCTGTAGGAGATTATAAAGGGGCTGTTGCAAAGTGCATTTCAGCAAATAAAATGGCTGATGCTTTAGTTATTGCTCATGCTGGTGGTCCGACGTTGTGGGAGCGCACTCGGGATCAATACCTTAAGTTGAGCCATTCACCTTACCTTAAGATTGTTTCTGCAATGGTGAGCAATGATCTATCAAGTCTTGTTAACACCAGACCCCTCAAATTCTGGAAGGAAACACTTGCTGTTCTCTGTAGTTTTTCATCAATAGAGGCGTGGGAAGGTCTCTGTAATACGCTTGCTGCTAGACTTATAGCTGCTGGTAATACCCTGGCAGCAACTATTTGTTATATATGTGCGGGAAATATTGACAAGACGGTAGATATTTGGTCAAGGAATCTGACAACTGATCATGAAGGGAGATCCTATGTTGACCTTCTTCAGGAATTAATGGAGAAGACTATAGTACTTGCCTTGGCAACTGGACAGAAGCGATTTAGTGCTTCTTTGTGCAAACTTGTTGAGAAATATGCTGAAATTTTAGCTAGTCAAGGTCTTTTGACAACAGCAATGGAGTACCTGAAACTCTTGGGCTCTGATGAATTGTCTCCTGAACTAGTGATCTTAAGGGATCGTATTGCTCTTTCTACAGAACCCGTAGAGAAAGTCCCCAAGACTGTAACATTTGAAAACCCTGATCAAACCCCTTATGTCGGTGGGAACCCTCCATATTATCAGGAACCAGCTCAGCCACCTGTGAATCCGTATGGCGGCTATTCTGAACCTGTGACTCCTCCATATGCAGGTGGAGGATATGTCCCATACCCCCAGCCTCCATCACAGACTCCATCACAGCCTCCTCACATATTTGTTCCTACACCAACACCTCAACTACCACAGGAAAAATATCTTGTACCTCCTGCTTCTACTCAGCCTAACATGACCTTTATTCCTTCGACTCCTCCTGGTCTGCCAAATGTGGAGAAGTATCATCAGCCTACGCTGGGTTCTCAATTGTATCCTGGAACTGCTTTTCAACCTATGCAAACAGGGCCTGGTTCAGGAGCCCCTCATCAATCACATGTCAATCCAGTTCCTGCAAATAAGATGCCTCATGCTGTACCCCCTCCACAAAGGGGATTTATGCCAGTCACTAATTCAGGAGTTGTTCAGGGGACTCTGCAGCCATCTAGTCCCCCTGCTCCACCTCGACCTTCCGTGGCTCCTGCTCCACCACCTACCATACAGACAGTTGATACTTCAAAAGTTCCCGGCCACCAAAAACCCGTAATCGCAACATTAGGGAGACTTTTCAATGAAACATCTGAAGCGTTGGGAGGTTCACGTGCAAATCCTGCTAAGAAGCGTGAAATAGAAGACAATTCAAGGAAGATAGGTGCACTGTTTGCCAAACTCAACAGCGGAGACATATCTAAAAATGCTGGTGATAAACTTGTGCAGCTGTGCCAGGCACTGGATAATGGTGATTTCACCACTGCCCTAGGCATTCAGATACAACTTACCACTAGTGAGTGGGATGAGTGCAACTTTTGGCTCGCAACTCTCAAGCGGATGATCAAGACCAGGCAAAATATGAGATTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
SRA1 Sec16_C WD40

Protein Analysis

1097

Amino Acids

118.27

Weight (kDa)

5.14

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 88 - 240 3.4e-11 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 88 - 252 6e-10 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 89 - 264 6.2e-13 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 89 - 157 5e-06 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 89 - 237 1.4e-09 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 89 - 238 9e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2 PF23414 138 - 301 1.1e-09 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 173 - 320 6.1e-13 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 198 - 338 7.7e-11 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 219 - 333 8.5e-08 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 245 - 339 7e-10 WDR5 beta-propeller domain
TPR_Sec16 PF12931 563 - 758 6e-09 Sec16 Sec23-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63460 AT3G63460 AT3G63460
fragaria_vesca FvH4_7g01850 FvH4_7g01850 FvH4_7g01850
malus_domestica MD02G1300000.v1.1 MD07G1024900.v1.1
prunus_persica Prupe.2G024600_v2.0.a1
pyrus_communis pycom02g25200 pycom07g01920
rosa_chinensis RchiOBHm_Chr1g0318481
rosa_laevigata RLG00000030534
rosa_multiflora Rmu_ssc0000021.1_g000001
rosa_roxburghii Rroxscaffold_4G00329170
rosa_rugosa Rorug01G0021600.1
rosa_samantha Rh1AG034000 Rh1BG030000 Rh1CG033500 Rh1DG037100
rosa_wichuraiana Rw1G002700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1008, 1716
AarI CACCTGC 1 cut(s) 2480
Acc36I ACCTGC 1 cut(s) 2480
AccB7I CCANNNNNTGG 1 cut(s) 3160
AccBSI CCGCTC 2 cut(s) 89, 310
AccII CGCG 2 cut(s) 47, 116
AclWI GGATC 8 cut(s) 102, 241, 313, 1212, 1661, 1821, 2103, 2325
AcoI YGGCCR 2 cut(s) 69, 2959
AcsI RAATTY 9 cut(s) 392, 412, 444, 931, 1002, 1217, 1592, 1910, 2223
AcuI CTGAAG 3 cut(s) 88, 2111, 3033
AcvI CACGTG 1 cut(s) 3032
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 7 cut(s) 62, 960, 1392, 2154, 2264, 2601, 2808
AflII CTTAAG 3 cut(s) 1823, 1847, 2311
AflIII ACRYGT 2 cut(s) 848, 2767
AhlI ACTAGT 2 cut(s) 2302, 3212
AjuI GAANNNNNNNTTGG 4 cut(s) 859, 891, 917, 949
Alw21I GWGCWC 6 cut(s) 191, 665, 1075, 1176, 1447, 3088
Alw26I GTCTC 5 cut(s) 323, 1976, 2298, 2986, 3105
Alw44I GTGCAC 3 cut(s) 1172, 1443, 3084
AlwI GGATC 8 cut(s) 102, 241, 313, 1212, 1661, 1821, 2103, 2325
AlwNI CAGNNNCTG 5 cut(s) 744, 890, 2741, 2783, 3160
Ama87I CYCGRG 1 cut(s) 1809
AoxI GGCC 6 cut(s) 69, 253, 374, 429, 2738, 2959
ApaLI GTGCAC 3 cut(s) 1172, 1443, 3084
ApeKI GCWGC 7 cut(s) 227, 515, 1988, 2003, 2021, 2869, 3145
ApoI RAATTY 9 cut(s) 392, 412, 444, 931, 1002, 1217, 1592, 1910, 2223
AseI ATTAAT 1 cut(s) 2135
Asp700I GAANNNNTTC 3 cut(s) 508, 1413, 1686
AspA2I CCTAGG 1 cut(s) 3187
AspLEI GCGC 4 cut(s) 49, 1092, 1664, 1806
AspS9I GGNCC 8 cut(s) 216, 374, 429, 556, 607, 1061, 1787, 2738
AsuC2I CCSGG 3 cut(s) 73, 1259, 2958
AvaI CYCGRG 1 cut(s) 1809
AvaII GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
AvrII CCTAGG 1 cut(s) 3187
AxyI CCTNAGG 1 cut(s) 1395
BaeGI GKGCMC 4 cut(s) 792, 1176, 1447, 3088
BanII GRGCYC 5 cut(s) 191, 264, 1075, 2282, 2755
BauI CACGAG 1 cut(s) 184
BbrPI CACGTG 1 cut(s) 3032
BbsI GAAGAC 5 cut(s) 661, 972, 1242, 2150, 3069
Bbv12I GWGCWC 6 cut(s) 191, 665, 1075, 1176, 1447, 3088
BbvI GCAGC 7 cut(s) 214, 502, 1975, 1990, 2033, 2881, 3157
BcgI CGANNNNNNTGC 4 cut(s) 561, 595, 1037, 1071
BciVI GTATCC 3 cut(s) 960, 1600, 2715
BclI TGATCA 4 cut(s) 1368, 2095, 2383, 3261
BcnI CCSGG 3 cut(s) 73, 1259, 2958
BcoDI GTCTC 5 cut(s) 323, 1976, 2298, 2986, 3105
BcuI ACTAGT 2 cut(s) 2302, 3212
BfaI CTAG 8 cut(s) 1143, 1551, 1992, 2232, 2303, 2877, 3188, 3213
BfmI CTRYAG 9 cut(s) 168, 891, 915, 1296, 1704, 1939, 2148, 2334, 2867
BfoI RGCGCY 2 cut(s) 1093, 1665
BfrI CTTAAG 3 cut(s) 1823, 1847, 2311
BfuAI ACCTGC 1 cut(s) 2480
BfuI GTATCC 3 cut(s) 960, 1600, 2715
BglII AGATCT 1 cut(s) 126
BlnI CCTAGG 1 cut(s) 3187
BlpI GCTNAGC 1 cut(s) 2433
BmcAI AGTACT 1 cut(s) 2154
Bme18I GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
BmeT110I CYCGRG 1 cut(s) 1809
BmgT120I GGNCC 8 cut(s) 216, 374, 429, 556, 607, 1061, 1787, 2738
BmiI GGNNCC 8 cut(s) 375, 430, 608, 922, 2408, 2427, 2752, 2910
BmsI GCATC 7 cut(s) 431, 459, 581, 719, 1112, 1750, 2784
BpiI GAAGAC 5 cut(s) 661, 972, 1242, 2150, 3069
BpmI CTGGAG 2 cut(s) 984, 1119
Bpu1102I GCTNAGC 1 cut(s) 2433
BpuEI CTTGAG 2 cut(s) 1475, 3236
BpuMI CCSGG 3 cut(s) 73, 1259, 2958
BsaAI YACGTR 1 cut(s) 3032
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 1976
BsaJI CCNNGG 9 cut(s) 256, 519, 520, 855, 1448, 2016, 2160, 2904, 3187
BsaWI WCCGGW 1 cut(s) 1651
BsaXI ACNNNNNCTCC 4 cut(s) 1277, 1307, 2487, 2517
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 7 cut(s) 626, 770, 932, 2173, 2777, 2834, 3165
Bse21I CCTNAGG 1 cut(s) 1395
Bse3DI GCAATG 4 cut(s) 816, 1869, 1879, 2262
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 9 cut(s) 256, 519, 520, 855, 1448, 2016, 2160, 2904, 3187
BseGI GGATG 3 cut(s) 572, 3229, 3264
BseJI GATNNNNATC 1 cut(s) 159
BseMI GCAATG 4 cut(s) 816, 1869, 1879, 2262
BseNI ACTGG 7 cut(s) 626, 770, 932, 2173, 2777, 2834, 3165
BseRI GAGGAG 5 cut(s) 100, 1560, 2469, 2535, 2637
BseSI GKGCMC 4 cut(s) 792, 1176, 1447, 3088
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 7 cut(s) 214, 502, 1975, 1990, 2033, 2881, 3157
BseYI CCCAGC 3 cut(s) 1093, 2514, 2689
BsgI GTGCAG 1 cut(s) 3164
Bsh1236I CGCG 2 cut(s) 47, 116
Bsh1285I CGRYCG 3 cut(s) 45, 72, 157
BshFI GGCC 6 cut(s) 71, 255, 376, 431, 2740, 2961
BsiEI CGRYCG 3 cut(s) 45, 72, 157
BsiHKAI GWGCWC 6 cut(s) 191, 665, 1075, 1176, 1447, 3088
BsiHKCI CYCGRG 1 cut(s) 1809
BsiSI CCGG 6 cut(s) 50, 72, 270, 1258, 1652, 2958
BsmAI GTCTC 5 cut(s) 323, 1976, 2298, 2986, 3105
BsmBI CGTCTC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 3192
BsnI GGCC 6 cut(s) 71, 255, 376, 431, 2740, 2961
Bso31I GGTCTC 1 cut(s) 1976
BsoBI CYCGRG 1 cut(s) 1809
Bsp1720I GCTNAGC 1 cut(s) 2433
BspANI GGCC 6 cut(s) 71, 255, 376, 431, 2740, 2961
BspFNI CGCG 2 cut(s) 47, 116
BspHI TCATGA 1 cut(s) 2098
BspLI GGNNCC 8 cut(s) 375, 430, 608, 922, 2408, 2427, 2752, 2910
BspMAI CTGCAG 4 cut(s) 895, 919, 1300, 2871
BspMI ACCTGC 1 cut(s) 2480
BspPI GGATC 8 cut(s) 102, 241, 313, 1212, 1661, 1821, 2103, 2325
BspTI CTTAAG 3 cut(s) 1823, 1847, 2311
BspTNI GGTCTC 1 cut(s) 1976
BsrBI CCGCTC 2 cut(s) 89, 310
BsrDI GCAATG 4 cut(s) 816, 1869, 1879, 2262
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 7 cut(s) 626, 770, 932, 2173, 2777, 2834, 3165
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 9 cut(s) 256, 519, 520, 855, 1448, 2016, 2160, 2904, 3187
BssNI GRCGYC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 184
BssT1I CCWWGG 4 cut(s) 256, 855, 2160, 3187
Bst2BI CACGAG 1 cut(s) 184
Bst6I CTCTTC 2 cut(s) 583, 1650
BstACI GRCGYC 1 cut(s) 32
BstAFI CTTAAG 3 cut(s) 1823, 1847, 2311
BstAPI GCANNNNNTGC 2 cut(s) 3041, 3092
BstBAI YACGTR 1 cut(s) 3032
BstC8I GCNNGC 5 cut(s) 225, 242, 915, 1986, 3243
BstDSI CCRYGG 1 cut(s) 2904
BstENI CCTNNNNNAGG 2 cut(s) 2126, 2745
BstF5I GGATG 3 cut(s) 572, 3229, 3264
BstFNI CGCG 2 cut(s) 47, 116
BstH2I RGCGCY 2 cut(s) 1093, 1665
BstHHI GCGC 4 cut(s) 49, 1092, 1664, 1806
BstMAI GTCTC 5 cut(s) 323, 1976, 2298, 2986, 3105
BstMCI CGRYCG 3 cut(s) 45, 72, 157
BstMWI GCNNNNNNNGC 6 cut(s) 38, 53, 428, 2737, 3041, 3092
BstNSI RCATGY 2 cut(s) 1697, 2771
BstSFI CTRYAG 9 cut(s) 168, 891, 915, 1296, 1704, 1939, 2148, 2334, 2867
BstSLI GKGCMC 4 cut(s) 792, 1176, 1447, 3088
BstUI CGCG 2 cut(s) 47, 116
BstV1I GCAGC 7 cut(s) 214, 502, 1975, 1990, 2033, 2881, 3157
BstV2I GAAGAC 5 cut(s) 661, 972, 1242, 2150, 3069
BstX2I RGATCY 3 cut(s) 94, 126, 2108
BstYI RGATCY 3 cut(s) 94, 126, 2108
BstZI CGGCCG 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 1395
BsuI GTATCC 3 cut(s) 960, 1600, 2715
BsuRI GGCC 6 cut(s) 71, 255, 376, 431, 2740, 2961
BtgI CCRYGG 1 cut(s) 2904
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 3 cut(s) 572, 3229, 3264
BtsI GCAGTG 2 cut(s) 680, 3180
BtsIMutI CAGTG 7 cut(s) 633, 680, 1393, 1447, 3086, 3158, 3180
BveI ACCTGC 1 cut(s) 2480
Cac8I GCNNGC 5 cut(s) 225, 242, 915, 1986, 3243
CaiI CAGNNNCTG 5 cut(s) 744, 890, 2741, 2783, 3160
CciI TCATGA 1 cut(s) 2098
CfoI GCGC 4 cut(s) 49, 1092, 1664, 1806
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 8 cut(s) 216, 374, 429, 556, 607, 1061, 1787, 2738
CseI GACGC 4 cut(s) 21, 62, 344, 966
Csp6I GTAC 7 cut(s) 61, 959, 1391, 2153, 2263, 2600, 2807
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 9 cut(s) 64, 816, 1314, 1694, 1778, 2099, 2626, 2768, 2801
CviQI GTAC 7 cut(s) 61, 959, 1391, 2153, 2263, 2600, 2807
EaeI YGGCCR 2 cut(s) 69, 2959
EagI CGGCCG 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 583, 1650
EarI CTCTTC 2 cut(s) 583, 1650
EciI GGCGGA 2 cut(s) 480, 1619
Ecl136II GAGCTC 2 cut(s) 189, 1073
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 4 cut(s) 256, 855, 2160, 3187
Eco24I GRGCYC 5 cut(s) 191, 264, 1075, 2282, 2755
Eco31I GGTCTC 1 cut(s) 1976
Eco32I GATATC 2 cut(s) 298, 972
Eco47I GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
Eco52I CGGCCG 1 cut(s) 69
Eco53kI GAGCTC 2 cut(s) 189, 1073
Eco57I CTGAAG 3 cut(s) 88, 2111, 3033
Eco72I CACGTG 1 cut(s) 3032
Eco81I CCTNAGG 1 cut(s) 1395
Eco88I CYCGRG 1 cut(s) 1809
EcoICRI GAGCTC 2 cut(s) 189, 1073
EcoNI CCTNNNNNAGG 2 cut(s) 2126, 2745
EcoO109I RGGNCCY 3 cut(s) 374, 607, 2738
EcoRV GATATC 2 cut(s) 298, 972
EcoT14I CCWWGG 4 cut(s) 256, 855, 2160, 3187
EcoT38I GRGCYC 5 cut(s) 191, 264, 1075, 2282, 2755
ErhI CCWWGG 4 cut(s) 256, 855, 2160, 3187
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 9 cut(s) 67, 819, 1317, 1697, 1781, 2102, 2629, 2771, 2804
FatI CATG 9 cut(s) 63, 815, 1313, 1693, 1777, 2098, 2625, 2767, 2800
FauI CCCGC 3 cut(s) 76, 232, 2038
FauNDI CATATG 1 cut(s) 2485
FbaI TGATCA 4 cut(s) 1368, 2095, 2383, 3261
FokI GGATG 3 cut(s) 559, 3236, 3271
FriOI GRGCYC 5 cut(s) 191, 264, 1075, 2282, 2755
FspBI CTAG 8 cut(s) 1143, 1551, 1992, 2232, 2303, 2877, 3188, 3213
GlaI GCGC 4 cut(s) 48, 1091, 1663, 1805
GsaI CCCAGC 3 cut(s) 1097, 2518, 2693
GsuI CTGGAG 2 cut(s) 984, 1119
HaeII RGCGCY 2 cut(s) 1093, 1665
HaeIII GGCC 6 cut(s) 71, 255, 376, 431, 2740, 2961
HapII CCGG 6 cut(s) 50, 72, 270, 1258, 1652, 2958
HgaI GACGC 4 cut(s) 21, 62, 344, 966
HhaI GCGC 4 cut(s) 49, 1092, 1664, 1806
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 9 cut(s) 67, 819, 1317, 1697, 1781, 2102, 2629, 2771, 2804
Hin6I GCGC 4 cut(s) 47, 1090, 1662, 1804
HinP1I GCGC 4 cut(s) 47, 1090, 1662, 1804
HincII GTYRAC 2 cut(s) 1894, 2119
HindII GTYRAC 2 cut(s) 1894, 2119
HpaI GTTAAC 1 cut(s) 1894
HpaII CCGG 6 cut(s) 50, 72, 270, 1258, 1652, 2958
Hpy99I CGWCG 4 cut(s) 37, 284, 437, 1795
HpyCH4IV ACGT 3 cut(s) 848, 1793, 3031
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 53, 428, 2737, 3041, 3092
HpySE526I ACGT 3 cut(s) 848, 1793, 3031
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 9 cut(s) 67, 819, 1317, 1697, 1781, 2102, 2629, 2771, 2804
HspAI GCGC 4 cut(s) 47, 1090, 1662, 1804
Ksp22I TGATCA 4 cut(s) 1368, 2095, 2383, 3261
KspAI GTTAAC 1 cut(s) 1894
Lsp1109I GCAGC 7 cut(s) 214, 502, 1975, 1990, 2033, 2881, 3157
LweI GCATC 7 cut(s) 431, 459, 581, 719, 1112, 1750, 2784
MaeI CTAG 8 cut(s) 1143, 1551, 1992, 2232, 2303, 2877, 3188, 3213
MaeII ACGT 3 cut(s) 848, 1793, 3031
MaeIII GTNAC 7 cut(s) 765, 1183, 1268, 1586, 2365, 2473, 2836
MbiI CCGCTC 2 cut(s) 89, 310
MfeI CAATTG 1 cut(s) 2699
MflI RGATCY 3 cut(s) 94, 126, 2108
MlyI GAGTC 8 cut(s) 188, 270, 1295, 1301, 2470, 2524, 2638, 2857
MmeI TCCRAC 3 cut(s) 129, 583, 1814
MroXI GAANNNNTTC 3 cut(s) 508, 1413, 1686
MslI CAYNNNNRTG 1 cut(s) 1782
MspA1I CMGCKG 5 cut(s) 227, 1097, 1433, 3108, 3148
MspCI CTTAAG 3 cut(s) 1823, 1847, 2311
MspI CCGG 6 cut(s) 50, 72, 270, 1258, 1652, 2958
MunI CAATTG 1 cut(s) 2699
Mva1269I GAATGC 1 cut(s) 3192
MvnI CGCG 2 cut(s) 47, 116
MwoI GCNNNNNNNGC 6 cut(s) 38, 53, 428, 2737, 3041, 3092
NciI CCSGG 3 cut(s) 73, 1259, 2958
NdeI CATATG 1 cut(s) 2485
NlaIII CATG 9 cut(s) 67, 819, 1317, 1697, 1781, 2102, 2629, 2771, 2804
NlaIV GGNNCC 8 cut(s) 375, 430, 608, 922, 2408, 2427, 2752, 2910
NmuCI GTSAC 5 cut(s) 765, 1268, 1586, 2473, 2836
NspI RCATGY 2 cut(s) 1697, 2771
PagI TCATGA 1 cut(s) 2098
PaqCI CACCTGC 1 cut(s) 2480
PasI CCCWGGG 1 cut(s) 520
PciI ACATGT 1 cut(s) 2767
PctI GAATGC 1 cut(s) 3192
PdmI GAANNNNTTC 3 cut(s) 508, 1413, 1686
PfeI GAWTC 8 cut(s) 198, 304, 644, 679, 1460, 1682, 2083, 2446
PflMI CCANNNNNTGG 1 cut(s) 3160
PfoI TCCNGGA 1 cut(s) 2707
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 8 cut(s) 187, 270, 1294, 1300, 2470, 2524, 2638, 2857
PmaCI CACGTG 1 cut(s) 3032
PmlI CACGTG 1 cut(s) 3032
PpsI GAGTC 8 cut(s) 187, 270, 1294, 1300, 2470, 2524, 2638, 2857
Ppu21I YACGTR 1 cut(s) 3032
PpuMI RGGWCCY 1 cut(s) 607
PscI ACATGT 1 cut(s) 2767
PshBI ATTAAT 1 cut(s) 2135
PsiI TTATAA 2 cut(s) 1008, 1716
Psp124BI GAGCTC 2 cut(s) 191, 1075
Psp5II RGGWCCY 1 cut(s) 607
PspCI CACGTG 1 cut(s) 3032
PspFI CCCAGC 3 cut(s) 1093, 2514, 2689
PspN4I GGNNCC 8 cut(s) 375, 430, 608, 922, 2408, 2427, 2752, 2910
PspPI GGNCC 8 cut(s) 216, 374, 429, 556, 607, 1061, 1787, 2738
PspPPI RGGWCCY 1 cut(s) 607
PstI CTGCAG 4 cut(s) 895, 919, 1300, 2871
PstNI CAGNNNCTG 5 cut(s) 744, 890, 2741, 2783, 3160
PsuI RGATCY 3 cut(s) 94, 126, 2108
PvuI CGATCG 1 cut(s) 157
PvuII CAGCTG 2 cut(s) 1097, 3148
RsaI GTAC 7 cut(s) 62, 960, 1392, 2154, 2264, 2601, 2808
RsaNI GTAC 7 cut(s) 61, 959, 1391, 2153, 2263, 2600, 2807
RseI CAYNNNNRTG 1 cut(s) 1782
SacI GAGCTC 2 cut(s) 191, 1075
Sau96I GGNCC 8 cut(s) 216, 374, 429, 556, 607, 1061, 1787, 2738
SbfI CCTGCAGG 1 cut(s) 919
ScaI AGTACT 1 cut(s) 2154
SchI GAGTC 8 cut(s) 188, 270, 1295, 1301, 2470, 2524, 2638, 2857
SdaI CCTGCAGG 1 cut(s) 919
SfaNI GCATC 7 cut(s) 431, 459, 581, 719, 1112, 1750, 2784
SfcI CTRYAG 9 cut(s) 168, 891, 915, 1296, 1704, 1939, 2148, 2334, 2867
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
SmiMI CAYNNNNRTG 1 cut(s) 1782
SmlI CTYRAG 5 cut(s) 1454, 1823, 1847, 2311, 3251
SmoI CTYRAG 5 cut(s) 1454, 1823, 1847, 2311, 3251
SpeI ACTAGT 2 cut(s) 2302, 3212
Sse8387I CCTGCAGG 1 cut(s) 919
SspI AATATT 2 cut(s) 1012, 2053
SspMI CTAG 8 cut(s) 1143, 1551, 1992, 2232, 2303, 2877, 3188, 3213
SstI GAGCTC 2 cut(s) 191, 1075
StyI CCWWGG 4 cut(s) 256, 855, 2160, 3187
TaiI ACGT 3 cut(s) 851, 1796, 3034
TaqI TCGA 7 cut(s) 123, 138, 282, 865, 936, 2642, 2896
TatI WGTACW 1 cut(s) 2152
TauI GCSGC 3 cut(s) 71, 1604, 2460
TfiI GAWTC 8 cut(s) 198, 304, 644, 679, 1460, 1682, 2083, 2446
TscAI CASTG 7 cut(s) 633, 680, 1393, 1447, 3093, 3165, 3187
TseFI GTSAC 5 cut(s) 765, 1268, 1586, 2473, 2836
TseI GCWGC 7 cut(s) 227, 515, 1988, 2003, 2021, 2869, 3145
Tsp45I GTSAC 5 cut(s) 765, 1268, 1586, 2473, 2836
TspGWI ACGGA 5 cut(s) 48, 311, 337, 2439, 2893
TspRI CASTG 7 cut(s) 633, 680, 1393, 1447, 3093, 3165, 3187
Van91I CCANNNNNTGG 1 cut(s) 3160
Vha464I CTTAAG 3 cut(s) 1823, 1847, 2311
VneI GTGCAC 3 cut(s) 1172, 1443, 3084
VpaK11BI GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
VspI ATTAAT 1 cut(s) 2135
XagI CCTNNNNNAGG 2 cut(s) 2126, 2745
XapI RAATTY 9 cut(s) 392, 412, 444, 931, 1002, 1217, 1592, 1910, 2223
XceI RCATGY 2 cut(s) 1697, 2771
XmaJI CCTAGG 1 cut(s) 3187
XmnI GAANNNNTTC 3 cut(s) 508, 1413, 1686
XspI CTAG 8 cut(s) 1143, 1551, 1992, 2232, 2303, 2877, 3188, 3213
ZrmI AGTACT 1 cut(s) 2154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.