Rh1AG034000

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010028
Physical Location & Seq
Forward (+)
5976287 .. 5987201
10915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG034000.1

Sequence Viewer

Length: 2799 bp
ATGCAGGGAAGTGGTTCTGCTGCCCAGGGTGAGATTTCATTTTTATCTTGGAATAGCAAGGTCCAACATATATTGGCATCCTCTTCGTATAATGGGACAACTGTGATTTGGGACCTAAAAAAGCAAAAGCCAGTGATAAGTTTTGCGGATTCAGTTAGAAGACGGTGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTTGTTGTTGCATCTGATGAAGATGGTTCACCTTCTCTCAGGCTCTGGGATATGCGTAATATATTGTCACCAGTTAAAGAGTTTGTGGGGCACACTAAAGGTGTAATTGCAATGTCATGGTGTCCTAATGACAGCTCTTATCTGCTAACGTGTGCCAAGGACAATCGAACTATTTGTTGGGACACAGTTTCTGCAGAGATTGTATGTGAATTGCCTGCAGGAACCAACTGGAATTTCGATGTGCATTGGTATCCGAAAGTACCTGGAGTGATATCAGCGTCTTCATTTGATGGAAAAATTGGAATTTATAATATTGAGGGTTGCAGTAGATATGGTGTGGGGGAGAGCGACTTTGGTGCTGGACCTCTCAGAGCTCCAAAATGGTATAAGCGCCCAGCTGGAGCATCTTTTGGTTTTGGAGGCAAGATTGTGTCCTTTCACCCTAGTTCATCTGGTGTTTCAGAGGTTTATGTGCACAGCTTGGTTACTGAACAAAGTTTGGTGGATCGCTCATCTGAATTTGAAAGTGCAATACAAAATGGGGAAAGGTCTTCACTCCGGGCTTTATGTGACAAGAAAGCACAGGAGTCTGAGTCTGCAGATGACCAGGAAACATGGGGCTTGTTAAGGGTTATGTTTGAAGATGATGGGACTGCAAGGACAAACCTGATCACACATCTTGGTTTCAGTGTACCTGAGGAAACAAAAGAAACAGTTCAAGATGGTCTATCAGCGGAAGTCAGTGCACCTGGGCTTGAGGATTCAACAACTGATAAAGCTGGTTTGGGTGCTGAGAAGGAAACTACAATTTTTCCTTCTGACAATGGAGAAGATTTCTTTAACAATCTTCCTAGTCCTAAAGCTGACACTCCTCATTCAACCTCTGGTGACAAATTTGTTGCGGCGGATACAGTTCCTATTACAGACCAAGTTCAAGAAGAACCTGATGAACCGGAAGAGAGCGCCGATCCTTCATTTGATGAATCAGTTCAACATGCTTTAGCTGTAGGAGATTATAAAGGGGCTGTTGCAAAGTGCATTTCAGCAAATAAAATGGCTGATGCTTTAGTTATTGCTCATGCTGGTGGTCCGACGTTGTGGGAGCGCACTCGGGATCAATACCTTAAGTTGAGCCATTCACCTTACCTTAAGATTGTTTCTGCAATGGTGAGCAATGATCTATCAAGTCTTGTTAACACCAGACCCCTCAAATTCTGGAAGGAAACACTTGCTGTTCTCTGTAGTTTTTCATCAATAGAGGCGTGGGAAGGTCTCTGTAATACGCTTGCTGCTAGACTTATAGCTGCTGGTAATACCCTGGCAGCAACTATTTGTTATATATGTGCGGGAAATATTGACAAGACGGTAGATATTTGGTCAAGGAATCTGACAACTGATCATGAAGGGAGATCCTATGTTGACCTTCTTCAGGAATTAATGGAGAAGACTATAGTACTTGCCTTGGCAACTGGACAGAAGCGATTTAGTGCTTCTTTGTGCAAACTTGTTGAGAAATATGCTGAAATTTTAGCTAGTCAAGGTCTTTTGACAACAGCAATGGAGTACCTGAAACTCTTGGGCTCTGATGAATTGTCTCCTGAACTAGTGATCTTAAGGGATCGTATTGCTCTTTCTACAGAACCCGTAGAGAAAGTCCCCAAGACTGTAACATTTGAAAACCCTGATCAAACCCCTTATGTCGGTGGGAACCCTCCATATTATCAGGAACCAGCTCAGCCACCTGTGAATCCGTATGGCGGCTATTCTGAACCTGTGACTCCTCCATATGCAGGTGGAGGATATGTCCCATACCCCCAGCCTCCATCACAGACTCCATCACAGCCTCCTCACATATTTGTTCCTACACCAACACCTCAACTACCACAGGAAAAATATCTTGTACCTCCTGCTTCTACTCAGCCTAACATGACCTTTATTCCTTCGACTCCTCCTGGTCTGCCAAATGTGGAGAAGTATCATCAGCCTACGCTGGGTTCTCAATTGTATCCTGGAACTGCTTTTCAACCTATGCAAACAGGGCCTGGTTCAGGAGCCCCTCATCAATCACATGTCAATCCAGTTCCTGCAAATAAGATGCCTCATGCTGTACCCCCTCCACAAAGGGGATTTATGCCAGTCACTAATTCAGGAGTTGTTCAGGGGACTCTGCAGCCATCTAGTCCCCCTGCTCCACCTCGACCTTCCGTGGCTCCTGCTCCACCACCTACCATACAGACAGTTGATACTTCAAAAGTTCCCGGCCACCAAAAACCCGTAATCGCAACATTAGGGAGACTTTTCAATGAAACATCTGAAGCGTTGGGAGGTTCACGTGCAAATCCTGCTAAGAAGCGTGAAATAGAAGACAATTCAAGGAAGATAGGTGCACTGTTTGCCAAACTCAACAGCGGAGACATATCTAAAAATGCTGGTGATAAACTTGTGCAGCTGTGCCAGGCACTGGATAATGGTGATTTCACCACTGCCCTAGGCATTCAGATACAACTTACCACTAGTGAGTGGGATGAGTGCAACTTTTGGCTCGCAACTCTCAAGCGGATGATCAAGACCAGGCAAAATATGAGATTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
SRA1 Sec16_C WD40

Protein Analysis

932

Amino Acids

100.96

Weight (kDa)

5.28

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 8 - 155 4.2e-13 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 15 - 137 1.9e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 33 - 173 6e-11 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 55 - 168 7.8e-08 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 80 - 174 5.6e-10 WDR5 beta-propeller domain
TPR_GEMI5 PF23774 392 - 529 1e-05 GEMI5 TPR domain
TPR_Sec16 PF12931 398 - 593 4.4e-09 Sec16 Sec23-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63460 AT3G63460 AT3G63460
fragaria_vesca FvH4_7g01850 FvH4_7g01850 FvH4_7g01850
malus_domestica MD02G1300000.v1.1 MD07G1024900.v1.1
prunus_persica Prupe.2G024600_v2.0.a1
pyrus_communis pycom02g25200 pycom07g01920
rosa_chinensis RchiOBHm_Chr1g0318481
rosa_laevigata RLG00000030534
rosa_multiflora Rmu_ssc0000021.1_g000001
rosa_roxburghii Rroxscaffold_4G00329170
rosa_rugosa Rorug01G0021600.1
rosa_samantha Rh1AG034000 Rh1BG030000 Rh1CG033500 Rh1DG037100
rosa_wichuraiana Rw1G002700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 513, 1221
AarI CACCTGC 1 cut(s) 1985
Acc36I ACCTGC 1 cut(s) 1985
AccB7I CCANNNNNTGG 1 cut(s) 2665
AciI CCGC 8 cut(s) 146, 938, 1106, 1109, 1550, 1962, 2613, 2761
AclWI GGATC 5 cut(s) 717, 1166, 1326, 1608, 1830
AcoI YGGCCR 1 cut(s) 2464
AcsI RAATTY 6 cut(s) 436, 507, 722, 1097, 1415, 1728
AcuI CTGAAG 2 cut(s) 1616, 2538
AcvI CACGTG 1 cut(s) 2537
AfaI GTAC 6 cut(s) 465, 897, 1659, 1769, 2106, 2313
AfiI CCNNNNNNNGG 8 cut(s) 1633, 1904, 1961, 1994, 2195, 2252, 2327, 2665
AflII CTTAAG 3 cut(s) 1328, 1352, 1816
AflIII ACRYGT 2 cut(s) 353, 2272
AhlI ACTAGT 2 cut(s) 1807, 2717
AjuI GAANNNNNNNTTGG 4 cut(s) 364, 396, 422, 454
Alw21I GWGCWC 5 cut(s) 170, 580, 681, 952, 2593
Alw26I GTCTC 4 cut(s) 1481, 1803, 2491, 2610
Alw44I GTGCAC 3 cut(s) 677, 948, 2589
AlwI GGATC 5 cut(s) 717, 1166, 1326, 1608, 1830
AlwNI CAGNNNCTG 5 cut(s) 249, 395, 2246, 2288, 2665
Ama87I CYCGRG 1 cut(s) 1314
AoxI GGCC 2 cut(s) 2243, 2464
ApaLI GTGCAC 3 cut(s) 677, 948, 2589
ApeKI GCWGC 6 cut(s) 20, 1493, 1508, 1526, 2374, 2650
ApoI RAATTY 6 cut(s) 436, 507, 722, 1097, 1415, 1728
AseI ATTAAT 1 cut(s) 1640
Asp700I GAANNNNTTC 3 cut(s) 13, 918, 1191
AspA2I CCTAGG 1 cut(s) 2692
AspLEI GCGC 3 cut(s) 597, 1169, 1311
AspS9I GGNCC 5 cut(s) 61, 112, 566, 1292, 2243
AsuC2I CCSGG 2 cut(s) 764, 2463
AvaI CYCGRG 1 cut(s) 1314
AvaII GGWCC 4 cut(s) 61, 112, 566, 1292
AvrII CCTAGG 1 cut(s) 2692
AxyI CCTNAGG 1 cut(s) 900
BaeGI GKGCMC 4 cut(s) 297, 681, 952, 2593
BanII GRGCYC 3 cut(s) 580, 1787, 2260
BbrPI CACGTG 1 cut(s) 2537
BbsI GAAGAC 5 cut(s) 166, 477, 747, 1655, 2574
Bbv12I GWGCWC 5 cut(s) 170, 580, 681, 952, 2593
BbvI GCAGC 6 cut(s) 7, 1480, 1495, 1538, 2386, 2662
BccI CCATC 7 cut(s) 221, 488, 845, 920, 2035, 2047, 2386
BcgI CGANNNNNNTGC 4 cut(s) 66, 100, 542, 576
BciVI GTATCC 3 cut(s) 465, 1105, 2220
BclI TGATCA 4 cut(s) 873, 1600, 1888, 2766
BcnI CCSGG 2 cut(s) 764, 2463
BcoDI GTCTC 4 cut(s) 1481, 1803, 2491, 2610
BcuI ACTAGT 2 cut(s) 1807, 2717
BfaI CTAG 8 cut(s) 648, 1056, 1497, 1737, 1808, 2382, 2693, 2718
BfmI CTRYAG 8 cut(s) 396, 420, 801, 1209, 1444, 1653, 1839, 2372
BfoI RGCGCY 2 cut(s) 598, 1170
BfrI CTTAAG 3 cut(s) 1328, 1352, 1816
BfuAI ACCTGC 1 cut(s) 1985
BfuI GTATCC 3 cut(s) 465, 1105, 2220
BisI GCNGC 8 cut(s) 21, 1107, 1494, 1509, 1527, 1963, 2375, 2651
BlnI CCTAGG 1 cut(s) 2692
BlpI GCTNAGC 1 cut(s) 1938
BlsI GCNGC 8 cut(s) 22, 1108, 1495, 1510, 1528, 1964, 2376, 2652
BmcAI AGTACT 1 cut(s) 1659
Bme18I GGWCC 4 cut(s) 61, 112, 566, 1292
BmeT110I CYCGRG 1 cut(s) 1314
BmgT120I GGNCC 5 cut(s) 61, 112, 566, 1292, 2243
BmiI GGNNCC 6 cut(s) 113, 427, 1913, 1932, 2257, 2415
BmsI GCATC 5 cut(s) 86, 224, 617, 1255, 2289
BpiI GAAGAC 5 cut(s) 166, 477, 747, 1655, 2574
BpmI CTGGAG 2 cut(s) 489, 624
Bpu1102I GCTNAGC 1 cut(s) 1938
BpuEI CTTGAG 2 cut(s) 980, 2741
BpuMI CCSGG 2 cut(s) 764, 2463
BsaAI YACGTR 1 cut(s) 2537
BsaI GGTCTC 1 cut(s) 1481
BsaJI CCNNGG 8 cut(s) 24, 25, 360, 953, 1521, 1665, 2409, 2692
BsaWI WCCGGW 1 cut(s) 1156
BsaXI ACNNNNNCTCC 4 cut(s) 782, 812, 1992, 2022
Bsc4I CCNNNNNNNGG 8 cut(s) 1633, 1904, 1961, 1994, 2195, 2252, 2327, 2665
Bse1I ACTGG 7 cut(s) 131, 275, 437, 1678, 2282, 2339, 2670
Bse21I CCTNAGG 1 cut(s) 900
Bse3DI GCAATG 4 cut(s) 321, 1374, 1384, 1767
BseDI CCNNGG 8 cut(s) 24, 25, 360, 953, 1521, 1665, 2409, 2692
BseGI GGATG 3 cut(s) 77, 2734, 2769
BseLI CCNNNNNNNGG 8 cut(s) 1633, 1904, 1961, 1994, 2195, 2252, 2327, 2665
BseMI GCAATG 4 cut(s) 321, 1374, 1384, 1767
BseMII CTCAG 8 cut(s) 215, 256, 586, 786, 891, 987, 1952, 2135
BseNI ACTGG 7 cut(s) 131, 275, 437, 1678, 2282, 2339, 2670
BseRI GAGGAG 4 cut(s) 1065, 1974, 2040, 2142
BseSI GKGCMC 4 cut(s) 297, 681, 952, 2593
BseXI GCAGC 6 cut(s) 7, 1480, 1495, 1538, 2386, 2662
BseYI CCCAGC 3 cut(s) 598, 2019, 2194
BsgI GTGCAG 1 cut(s) 2669
BshFI GGCC 2 cut(s) 2245, 2466
BsiHKAI GWGCWC 5 cut(s) 170, 580, 681, 952, 2593
BsiHKCI CYCGRG 1 cut(s) 1314
BsiSI CCGG 3 cut(s) 763, 1157, 2463
BslFI GGGAC 8 cut(s) 109, 125, 398, 868, 1844, 1994, 2370, 2380
BslI CCNNNNNNNGG 8 cut(s) 1633, 1904, 1961, 1994, 2195, 2252, 2327, 2665
BsmAI GTCTC 4 cut(s) 1481, 1803, 2491, 2610
BsmFI GGGAC 8 cut(s) 109, 125, 398, 868, 1844, 1994, 2370, 2380
BsmI GAATGC 1 cut(s) 2697
BsnI GGCC 2 cut(s) 2245, 2466
Bso31I GGTCTC 1 cut(s) 1481
BsoBI CYCGRG 1 cut(s) 1314
Bsp1286I GDGCHC 8 cut(s) 170, 297, 580, 681, 952, 1787, 2260, 2593
Bsp1720I GCTNAGC 1 cut(s) 1938
BspACI CCGC 8 cut(s) 146, 938, 1106, 1109, 1550, 1962, 2613, 2761
BspANI GGCC 2 cut(s) 2245, 2466
BspCNI CTCAG 8 cut(s) 214, 255, 585, 787, 892, 988, 1951, 2134
BspHI TCATGA 1 cut(s) 1603
BspLI GGNNCC 6 cut(s) 113, 427, 1913, 1932, 2257, 2415
BspMAI CTGCAG 4 cut(s) 400, 424, 805, 2376
BspMI ACCTGC 1 cut(s) 1985
BspPI GGATC 5 cut(s) 717, 1166, 1326, 1608, 1830
BspTI CTTAAG 3 cut(s) 1328, 1352, 1816
BspTNI GGTCTC 1 cut(s) 1481
BsrDI GCAATG 4 cut(s) 321, 1374, 1384, 1767
BsrI ACTGG 7 cut(s) 131, 275, 437, 1678, 2282, 2339, 2670
BssECI CCNNGG 8 cut(s) 24, 25, 360, 953, 1521, 1665, 2409, 2692
BssT1I CCWWGG 3 cut(s) 360, 1665, 2692
Bst4CI ACNGT 9 cut(s) 103, 165, 391, 919, 1117, 1570, 1870, 2443, 2595
Bst6I CTCTTC 2 cut(s) 88, 1155
BstAFI CTTAAG 3 cut(s) 1328, 1352, 1816
BstAPI GCANNNNNTGC 2 cut(s) 2546, 2597
BstBAI YACGTR 1 cut(s) 2537
BstC8I GCNNGC 3 cut(s) 420, 1491, 2748
BstDEI CTNAG 9 cut(s) 201, 242, 572, 795, 900, 996, 1938, 2121, 2550
BstDSI CCRYGG 1 cut(s) 2409
BstENI CCTNNNNNAGG 2 cut(s) 1631, 2250
BstF5I GGATG 3 cut(s) 77, 2734, 2769
BstH2I RGCGCY 2 cut(s) 598, 1170
BstHHI GCGC 3 cut(s) 597, 1169, 1311
BstMAI GTCTC 4 cut(s) 1481, 1803, 2491, 2610
BstMWI GCNNNNNNNGC 3 cut(s) 2242, 2546, 2597
BstNSI RCATGY 2 cut(s) 1202, 2276
BstSFI CTRYAG 8 cut(s) 396, 420, 801, 1209, 1444, 1653, 1839, 2372
BstSLI GKGCMC 4 cut(s) 297, 681, 952, 2593
BstV1I GCAGC 6 cut(s) 7, 1480, 1495, 1538, 2386, 2662
BstV2I GAAGAC 5 cut(s) 166, 477, 747, 1655, 2574
BstX2I RGATCY 1 cut(s) 1613
BstYI RGATCY 1 cut(s) 1613
Bsu36I CCTNAGG 1 cut(s) 900
BsuI GTATCC 3 cut(s) 465, 1105, 2220
BsuRI GGCC 2 cut(s) 2245, 2466
BtgI CCRYGG 1 cut(s) 2409
BtsCI GGATG 3 cut(s) 77, 2734, 2769
BtsI GCAGTG 2 cut(s) 185, 2685
BtsIMutI CAGTG 7 cut(s) 138, 185, 898, 952, 2591, 2663, 2685
BveI ACCTGC 1 cut(s) 1985
Cac8I GCNNGC 3 cut(s) 420, 1491, 2748
CaiI CAGNNNCTG 5 cut(s) 249, 395, 2246, 2288, 2665
CciI TCATGA 1 cut(s) 1603
CfoI GCGC 3 cut(s) 597, 1169, 1311
Cfr13I GGNCC 5 cut(s) 61, 112, 566, 1292, 2243
CseI GACGC 1 cut(s) 471
Csp6I GTAC 6 cut(s) 464, 896, 1658, 1768, 2105, 2312
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 8 cut(s) 321, 819, 1199, 1283, 1604, 2131, 2273, 2306
CviQI GTAC 6 cut(s) 464, 896, 1658, 1768, 2105, 2312
DdeI CTNAG 9 cut(s) 201, 242, 572, 795, 900, 996, 1938, 2121, 2550
EaeI YGGCCR 1 cut(s) 2464
Eam1104I CTCTTC 2 cut(s) 88, 1155
EarI CTCTTC 2 cut(s) 88, 1155
EciI GGCGGA 1 cut(s) 1124
Ecl136II GAGCTC 1 cut(s) 578
Eco130I CCWWGG 3 cut(s) 360, 1665, 2692
Eco24I GRGCYC 3 cut(s) 580, 1787, 2260
Eco31I GGTCTC 1 cut(s) 1481
Eco32I GATATC 1 cut(s) 477
Eco47I GGWCC 4 cut(s) 61, 112, 566, 1292
Eco53kI GAGCTC 1 cut(s) 578
Eco57I CTGAAG 2 cut(s) 1616, 2538
Eco72I CACGTG 1 cut(s) 2537
Eco81I CCTNAGG 1 cut(s) 900
Eco88I CYCGRG 1 cut(s) 1314
EcoICRI GAGCTC 1 cut(s) 578
EcoNI CCTNNNNNAGG 2 cut(s) 1631, 2250
EcoO109I RGGNCCY 2 cut(s) 112, 2243
EcoRV GATATC 1 cut(s) 477
EcoT14I CCWWGG 3 cut(s) 360, 1665, 2692
EcoT38I GRGCYC 3 cut(s) 580, 1787, 2260
ErhI CCWWGG 3 cut(s) 360, 1665, 2692
FaeI CATG 8 cut(s) 324, 822, 1202, 1286, 1607, 2134, 2276, 2309
FaqI GGGAC 8 cut(s) 109, 125, 398, 868, 1844, 1994, 2370, 2380
FatI CATG 8 cut(s) 320, 818, 1198, 1282, 1603, 2130, 2272, 2305
FauI CCCGC 1 cut(s) 1543
FauNDI CATATG 1 cut(s) 1990
FbaI TGATCA 4 cut(s) 873, 1600, 1888, 2766
Fnu4HI GCNGC 8 cut(s) 21, 1107, 1494, 1509, 1527, 1963, 2375, 2651
FokI GGATG 3 cut(s) 64, 2741, 2776
FriOI GRGCYC 3 cut(s) 580, 1787, 2260
Fsp4HI GCNGC 8 cut(s) 21, 1107, 1494, 1509, 1527, 1963, 2375, 2651
FspBI CTAG 8 cut(s) 648, 1056, 1497, 1737, 1808, 2382, 2693, 2718
GlaI GCGC 3 cut(s) 596, 1168, 1310
GluI GCNGC 8 cut(s) 21, 1107, 1494, 1509, 1527, 1963, 2375, 2651
GsaI CCCAGC 3 cut(s) 602, 2023, 2198
GsuI CTGGAG 2 cut(s) 489, 624
HaeII RGCGCY 2 cut(s) 598, 1170
HaeIII GGCC 2 cut(s) 2245, 2466
HapII CCGG 3 cut(s) 763, 1157, 2463
HgaI GACGC 1 cut(s) 471
HhaI GCGC 3 cut(s) 597, 1169, 1311
Hin1II CATG 8 cut(s) 324, 822, 1202, 1286, 1607, 2134, 2276, 2309
Hin6I GCGC 3 cut(s) 595, 1167, 1309
HinP1I GCGC 3 cut(s) 595, 1167, 1309
HincII GTYRAC 2 cut(s) 1399, 1624
HindII GTYRAC 2 cut(s) 1399, 1624
HpaI GTTAAC 1 cut(s) 1399
HpaII CCGG 3 cut(s) 763, 1157, 2463
Hpy166II GTNNAC 8 cut(s) 233, 679, 896, 950, 1399, 1624, 2534, 2591
Hpy8I GTNNAC 8 cut(s) 233, 679, 896, 950, 1399, 1624, 2534, 2591
Hpy99I CGWCG 1 cut(s) 1300
HpyCH4III ACNGT 9 cut(s) 103, 165, 391, 919, 1117, 1570, 1870, 2443, 2595
HpyCH4IV ACGT 3 cut(s) 353, 1298, 2536
HpyF10VI GCNNNNNNNGC 3 cut(s) 2242, 2546, 2597
HpyF3I CTNAG 9 cut(s) 201, 242, 572, 795, 900, 996, 1938, 2121, 2550
HpySE526I ACGT 3 cut(s) 353, 1298, 2536
Hsp92II CATG 8 cut(s) 324, 822, 1202, 1286, 1607, 2134, 2276, 2309
HspAI GCGC 3 cut(s) 595, 1167, 1309
Ksp22I TGATCA 4 cut(s) 873, 1600, 1888, 2766
KspAI GTTAAC 1 cut(s) 1399
LmnI GCTCC 7 cut(s) 583, 605, 1306, 2255, 2398, 2419, 2425
Lsp1109I GCAGC 6 cut(s) 7, 1480, 1495, 1538, 2386, 2662
LweI GCATC 5 cut(s) 86, 224, 617, 1255, 2289
MaeI CTAG 8 cut(s) 648, 1056, 1497, 1737, 1808, 2382, 2693, 2718
MaeII ACGT 3 cut(s) 353, 1298, 2536
MaeIII GTNAC 7 cut(s) 270, 688, 773, 1091, 1870, 1978, 2341
MfeI CAATTG 1 cut(s) 2204
MflI RGATCY 1 cut(s) 1613
MhlI GDGCHC 8 cut(s) 170, 297, 580, 681, 952, 1787, 2260, 2593
MlyI GAGTC 6 cut(s) 800, 806, 1975, 2029, 2143, 2362
MmeI TCCRAC 2 cut(s) 88, 1319
MroXI GAANNNNTTC 3 cut(s) 13, 918, 1191
MseI TTAA 9 cut(s) 279, 830, 1044, 1329, 1353, 1398, 1640, 1817, 2792
MslI CAYNNNNRTG 1 cut(s) 1287
MspA1I CMGCKG 4 cut(s) 602, 938, 2613, 2653
MspCI CTTAAG 3 cut(s) 1328, 1352, 1816
MspI CCGG 3 cut(s) 763, 1157, 2463
MunI CAATTG 1 cut(s) 2204
Mva1269I GAATGC 1 cut(s) 2697
MwoI GCNNNNNNNGC 3 cut(s) 2242, 2546, 2597
NciI CCSGG 2 cut(s) 764, 2463
NdeI CATATG 1 cut(s) 1990
NlaIII CATG 8 cut(s) 324, 822, 1202, 1286, 1607, 2134, 2276, 2309
NlaIV GGNNCC 6 cut(s) 113, 427, 1913, 1932, 2257, 2415
NmuCI GTSAC 5 cut(s) 270, 773, 1091, 1978, 2341
NspI RCATGY 2 cut(s) 1202, 2276
PagI TCATGA 1 cut(s) 1603
PaqCI CACCTGC 1 cut(s) 1985
PasI CCCWGGG 1 cut(s) 25
PciI ACATGT 1 cut(s) 2272
PctI GAATGC 1 cut(s) 2697
PdmI GAANNNNTTC 3 cut(s) 13, 918, 1191
PfeI GAWTC 6 cut(s) 149, 184, 965, 1187, 1588, 1951
PflMI CCANNNNNTGG 1 cut(s) 2665
PfoI TCCNGGA 1 cut(s) 2212
PkrI GCNGC 8 cut(s) 22, 1108, 1495, 1510, 1528, 1964, 2376, 2652
PleI GAGTC 6 cut(s) 799, 805, 1975, 2029, 2143, 2362
PmaCI CACGTG 1 cut(s) 2537
PmlI CACGTG 1 cut(s) 2537
PpsI GAGTC 6 cut(s) 799, 805, 1975, 2029, 2143, 2362
Ppu21I YACGTR 1 cut(s) 2537
PpuMI RGGWCCY 1 cut(s) 112
PscI ACATGT 1 cut(s) 2272
PshBI ATTAAT 1 cut(s) 1640
PsiI TTATAA 2 cut(s) 513, 1221
Psp124BI GAGCTC 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 112
PspCI CACGTG 1 cut(s) 2537
PspFI CCCAGC 3 cut(s) 598, 2019, 2194
PspN4I GGNNCC 6 cut(s) 113, 427, 1913, 1932, 2257, 2415
PspPI GGNCC 5 cut(s) 61, 112, 566, 1292, 2243
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 4 cut(s) 400, 424, 805, 2376
PstNI CAGNNNCTG 5 cut(s) 249, 395, 2246, 2288, 2665
PsuI RGATCY 1 cut(s) 1613
PvuII CAGCTG 2 cut(s) 602, 2653
RsaI GTAC 6 cut(s) 465, 897, 1659, 1769, 2106, 2313
RsaNI GTAC 6 cut(s) 464, 896, 1658, 1768, 2105, 2312
RseI CAYNNNNRTG 1 cut(s) 1287
SacI GAGCTC 1 cut(s) 580
SaqAI TTAA 9 cut(s) 279, 830, 1044, 1329, 1353, 1398, 1640, 1817, 2792
SatI GCNGC 8 cut(s) 21, 1107, 1494, 1509, 1527, 1963, 2375, 2651
Sau96I GGNCC 5 cut(s) 61, 112, 566, 1292, 2243
SbfI CCTGCAGG 1 cut(s) 424
ScaI AGTACT 1 cut(s) 1659
SchI GAGTC 6 cut(s) 800, 806, 1975, 2029, 2143, 2362
SdaI CCTGCAGG 1 cut(s) 424
SduI GDGCHC 8 cut(s) 170, 297, 580, 681, 952, 1787, 2260, 2593
SfaNI GCATC 5 cut(s) 86, 224, 617, 1255, 2289
SfcI CTRYAG 8 cut(s) 396, 420, 801, 1209, 1444, 1653, 1839, 2372
SinI GGWCC 4 cut(s) 61, 112, 566, 1292
SmiMI CAYNNNNRTG 1 cut(s) 1287
SmlI CTYRAG 5 cut(s) 959, 1328, 1352, 1816, 2756
SmoI CTYRAG 5 cut(s) 959, 1328, 1352, 1816, 2756
SpeI ACTAGT 2 cut(s) 1807, 2717
Sse8387I CCTGCAGG 1 cut(s) 424
SsiI CCGC 8 cut(s) 146, 938, 1106, 1109, 1550, 1962, 2613, 2761
SspI AATATT 2 cut(s) 517, 1558
SspMI CTAG 8 cut(s) 648, 1056, 1497, 1737, 1808, 2382, 2693, 2718
SstI GAGCTC 1 cut(s) 580
StyI CCWWGG 3 cut(s) 360, 1665, 2692
TaaI ACNGT 9 cut(s) 103, 165, 391, 919, 1117, 1570, 1870, 2443, 2595
TaiI ACGT 3 cut(s) 356, 1301, 2539
TaqI TCGA 4 cut(s) 370, 441, 2147, 2401
TatI WGTACW 1 cut(s) 1657
TauI GCSGC 2 cut(s) 1109, 1965
TfiI GAWTC 6 cut(s) 149, 184, 965, 1187, 1588, 1951
Tru1I TTAA 9 cut(s) 279, 830, 1044, 1329, 1353, 1398, 1640, 1817, 2792
Tru9I TTAA 9 cut(s) 279, 830, 1044, 1329, 1353, 1398, 1640, 1817, 2792
TscAI CASTG 7 cut(s) 138, 185, 898, 952, 2598, 2670, 2692
TseFI GTSAC 5 cut(s) 270, 773, 1091, 1978, 2341
TseI GCWGC 6 cut(s) 20, 1493, 1508, 1526, 2374, 2650
Tsp45I GTSAC 5 cut(s) 270, 773, 1091, 1978, 2341
TspGWI ACGGA 2 cut(s) 1944, 2398
TspRI CASTG 7 cut(s) 138, 185, 898, 952, 2598, 2670, 2692
Van91I CCANNNNNTGG 1 cut(s) 2665
Vha464I CTTAAG 3 cut(s) 1328, 1352, 1816
VneI GTGCAC 3 cut(s) 677, 948, 2589
VpaK11BI GGWCC 4 cut(s) 61, 112, 566, 1292
VspI ATTAAT 1 cut(s) 1640
XagI CCTNNNNNAGG 2 cut(s) 1631, 2250
XapI RAATTY 6 cut(s) 436, 507, 722, 1097, 1415, 1728
XceI RCATGY 2 cut(s) 1202, 2276
XmaJI CCTAGG 1 cut(s) 2692
XmnI GAANNNNTTC 3 cut(s) 13, 918, 1191
XspI CTAG 8 cut(s) 648, 1056, 1497, 1737, 1808, 2382, 2693, 2718
ZrmI AGTACT 1 cut(s) 1659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.