Rh1BG030000

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010028
Physical Location & Seq
Forward (+)
4038141 .. 4048683
10543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG030000.1

Sequence Viewer

Length: 2754 bp
ATGGCGTGTATAAAGGGGGTGAACAGATCGGCGTCGGTGGCGGTCGCGCCGGACGCTCCGTACATGGCGGCCGGGACGATGGCGGGAGCGGTGGATCTGTCGTTCAGCTCCTCCGCGAATATCGAGATCTTCAAGCTCGATTTACAGTCGGATGATCGTGATCTTCCTGTAGTGGGAGAGTCGACGAGCTCTGAGAGATTCAACAGGTTATCGTGGTCCAAGCCCGCCGCTGGATCAGGCTCGCAAGACTTTGGCCTTGGGCTCATCGCCGGTGGACTTGTCGATGGGACTATTGATATCTGGAATCCGCTCACTCTGATCCGTTCTGAGACAGGGGAAAATGCTTCTGTTGAGCGTCTGACAAGACATAAGGGGCCTGTTCGTGGTCTTGAATTTAATGCAATCGCCCCAAATTTACTTGCATCTGGGGCCGATGATGGTGAAATTTGCATCTGGGACTTGGCTAATCCTACTGAGCCAACTCATTTTCCGCCTCTTAGGGGAAGTGGTTCTGCTGCCCAGGGTGAGATTTCATTTTTATCTTGGAATAGCAAGGTCCAACATATATTGGCATCCTCTTCGTATAATGGGACAACTGTGATTTGGGACCTAAAAAAGCAAAAGCCAGTGATAAGTTTTGCGGATTCAGTTAGAAGACGGTGCTCTGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTTGTTGTTGCATCTGATGAAGATGGTTCACCTTCTCTCAGGCTCTGGGATATGCGTAATATATTGTCACCAGTTAAAGAGTTTGTGGGGCACACTAAAGGTGTAATTGCAATGTCATGGTGTCCTAATGACAGCTCTTATCTGCTAACGTGTGCCAAGGACAATCGAACTATTTGTTGGGACACAGTTTCTGCAGAGATTGTATGTGAATTGCCTGCAGGCACCAACTGGAATTTCGATGTGCATTGGTATCCGAAGGTACCTGGAGTGATATTAGCGTCTTCATTTGATGGAAAAATTGGAATTTATAATATTGAGGGTTGCAGTAGATATGGTGTGGGGGAGAGCGACTTTGGTGCTGGACCTCTCAGAGCTCCAAAATGGTATAAGCGCCCAGCTGGAGCATCTTTTGGTTTCGGAGGCAAGATCGTGTCCTTTCACCCTAGTTCATCTGGTGTTTCAGAGGTTTATGTGCACAGCTTGGTTACTGAACAAAGTTTGGTGGATCGCTCATCTGAATTTGAAAGTGCAATACAAAATGGGGAAAGGTCTTCACTCCGGGCTTTATGTGACAAGAAAGCACAGGAGTCTGAGTCTGCGGATGACCGGGAAACATGGGGCTTGTTAAGGGTTATGTTTGAAGATGATGGGACTGCAAGGACAAACCTGATCACACATCTTGGTTTCAGTGTACCTGAGGAAACAAAAGAAACAGTTCAAGATGGTCTATCAGCGGAAGTCAGTGCACCTGGGATTGAGGATTCAACAACTGATAAAGCTGGTTTGGATGCTGAGAAGGAAACTACAATTTTTCCTTCTGACAATGGAGAAGATTTCTTTAACAATCTTCCTAGTCCTAAAGCTGACACTCCTCATTCAACCTCTGGTGACAAATTTGTTGCGGCGGATACAGCTCCTATTACAGACCAAGTTCAAGAAGAACCTGATGAACCGGAAGAGAGCGCCGATCCTTCATTTGATGAATCAGTTCAACATGCTTTAGCTGTAGGAGATTATAAAGGGGCTGTTGCAAAGTGCATTTCAGCAAATAAAATGGCTGATGCTTTAGTTATTGCTCATGCTGGTGGTCCAACGTTGTGGGAGCGCACTCGGGATCAATACCTTAAGTTGAGCCATTCACCTTACCTTAAGATTGTTTCTGCAATGGTGAGCAATGATCTATCAAGTCTTGTTAACACCAGACCCCTCAAATTCTGGAAGGAAACACTTGCTGTTCTCTGTAGTTTTTCATCAATAGAGGCGTGGGAAGGTCTCTGTAATACGCTTGCTGCTAGACTTATAGCTGCTGGGAATACCCTGGCAGCAACTATTTGTTATATATGTGCGGGAAATATTGACAAGACAGTAGATATTTGGTCAAGGAATCTGACAACTGATCATGAAGGGAGATCCTATGTTGACCTTCTTCAGGAATTAATGGAGAAGACTATAGTACTTGCCTTGGCAACTGGACAGAAGCGATTTAGTGCTTCTTTGTGCAAACTTGTTGAGAAATATGCTGAAATTTTAGCTAGTCAAGGTCTTTTAACAACAGCAATGGAGTACCTGAAACTCTTGGGCTCTGATGAATTGTCTCCTGAACTTGTGATCTTAAGGGATCGTATTGCTCTTTCTACAGAACCCGTAGAGAAAGTCCCCAAGACTGTAACATTTGAAAACCCTGATCAAACCCCTTATGTGGGTGGGAACACTCCATATTATCAGGAACCAGCTCAGCCACCTGTGAATCCGTATGGCGGCTATTCTGAACCTGTGAGTCCTCCGTATGCAGGTGGAGGATATCCTCATGTCCCATACCCCCAGCCTCCATCACAGACTCCATCACAGCCTCCTCACATGTTTGTTCCTACACCAACACCTCAACTACCACAGGAAAAATATCCTGTACCTCCTGCTTCTACTCAGCCTAACGTGTCCTTTATTCCTTCGACTCCTCCTACTCTGTCAAATGTGGAGAAGTATCATCAGCCTACGCTGGGTTCTCAATTGTATCCTGTCGGTAGATCTGCACTTGATTTTAAATTACAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
SRA1 Sec16_C WD40

Protein Analysis

917

Amino Acids

99.24

Weight (kDa)

4.87

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 88 - 156 8.3e-06 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 88 - 252 4.2e-10 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 89 - 157 4.1e-06 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 89 - 237 1.2e-09 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 89 - 238 6.9e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 90 - 252 9.9e-12 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 138 - 301 8.1e-10 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 173 - 307 8.7e-13 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 198 - 339 4.4e-11 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 245 - 339 1.2e-09 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 245 - 333 2.2e-06 THOC3 beta-propeller domain
TPR_GEMI5 PF23774 556 - 694 9.5e-06 GEMI5 TPR domain
TPR_Sec16 PF12931 563 - 758 4.3e-09 Sec16 Sec23-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010028)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63460 AT3G63460 AT3G63460
fragaria_vesca FvH4_7g01850 FvH4_7g01850 FvH4_7g01850
malus_domestica MD02G1300000.v1.1 MD07G1024900.v1.1
prunus_persica Prupe.2G024600_v2.0.a1
pyrus_communis pycom02g25200 pycom07g01920
rosa_chinensis RchiOBHm_Chr1g0318481
rosa_laevigata RLG00000030534
rosa_multiflora Rmu_ssc0000021.1_g000001
rosa_roxburghii Rroxscaffold_4G00329170
rosa_rugosa Rorug01G0021600.1
rosa_samantha Rh1AG034000 Rh1BG030000 Rh1CG033500 Rh1DG037100
rosa_wichuraiana Rw1G002700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1008, 1716
AarI CACCTGC 1 cut(s) 2480
Acc36I ACCTGC 1 cut(s) 2480
Acc65I GGTACC 1 cut(s) 958
AccB1I GGYRCC 2 cut(s) 920, 958
AccBSI CCGCTC 2 cut(s) 89, 310
AccI GTMKAC 1 cut(s) 182
AccII CGCG 2 cut(s) 47, 116
AclI AACGTT 1 cut(s) 1793
AclWI GGATC 8 cut(s) 102, 241, 313, 1212, 1661, 1821, 2103, 2325
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 9 cut(s) 392, 412, 444, 931, 1002, 1217, 1592, 1910, 2223
AcuI CTGAAG 1 cut(s) 2111
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 6 cut(s) 62, 960, 1392, 2154, 2264, 2607
AflII CTTAAG 3 cut(s) 1823, 1847, 2311
AflIII ACRYGT 3 cut(s) 848, 2556, 2631
AjnI CCWGG 4 cut(s) 519, 961, 1447, 2016
AjuI GAANNNNNNNTTGG 4 cut(s) 859, 891, 917, 949
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
Alw21I GWGCWC 5 cut(s) 191, 665, 1075, 1176, 1447
Alw26I GTCTC 3 cut(s) 323, 1976, 2298
Alw44I GTGCAC 2 cut(s) 1172, 1443
AlwI GGATC 8 cut(s) 102, 241, 313, 1212, 1661, 1821, 2103, 2325
AlwNI CAGNNNCTG 2 cut(s) 744, 890
Ama87I CYCGRG 1 cut(s) 1809
AoxI GGCC 4 cut(s) 69, 253, 374, 429
ApaLI GTGCAC 2 cut(s) 1172, 1443
ApeKI GCWGC 4 cut(s) 515, 1988, 2003, 2021
ApoI RAATTY 9 cut(s) 392, 412, 444, 931, 1002, 1217, 1592, 1910, 2223
AseI ATTAAT 1 cut(s) 2135
Asp700I GAANNNNTTC 3 cut(s) 508, 1413, 1686
Asp718I GGTACC 1 cut(s) 958
AspLEI GCGC 4 cut(s) 49, 1092, 1664, 1806
AspS9I GGNCC 7 cut(s) 216, 374, 429, 556, 607, 1061, 1787
AsuC2I CCSGG 3 cut(s) 73, 1259, 1307
AsuHPI GGTGA 9 cut(s) 31, 452, 536, 720, 759, 1130, 1598, 1830, 1879
AvaI CYCGRG 1 cut(s) 1809
AvaII GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
AxyI CCTNAGG 1 cut(s) 1395
BaeGI GKGCMC 3 cut(s) 792, 1176, 1447
BanI GGYRCC 2 cut(s) 920, 958
BanII GRGCYC 4 cut(s) 191, 264, 1075, 2282
BbsI GAAGAC 4 cut(s) 661, 972, 1242, 2150
Bbv12I GWGCWC 5 cut(s) 191, 665, 1075, 1176, 1447
BbvI GCAGC 4 cut(s) 502, 1975, 1990, 2033
BccI CCATC 9 cut(s) 73, 278, 431, 716, 983, 1340, 1415, 2536, 2548
BcgI CGANNNNNNTGC 4 cut(s) 561, 595, 1037, 1071
BciT130I CCWGG 4 cut(s) 521, 963, 1449, 2018
BciVI GTATCC 3 cut(s) 960, 1600, 2721
BclI TGATCA 3 cut(s) 1368, 2095, 2383
BcnI CCSGG 3 cut(s) 73, 1259, 1307
BcoDI GTCTC 3 cut(s) 323, 1976, 2298
BfaI CTAG 4 cut(s) 1143, 1551, 1992, 2232
BfmI CTRYAG 7 cut(s) 168, 891, 915, 1704, 1939, 2148, 2334
BfoI RGCGCY 2 cut(s) 1093, 1665
BfrI CTTAAG 3 cut(s) 1823, 1847, 2311
BfuAI ACCTGC 1 cut(s) 2480
BfuI GTATCC 3 cut(s) 960, 1600, 2721
BglII AGATCT 3 cut(s) 126, 2723, 2748
BisI GCNGC 8 cut(s) 69, 228, 516, 1602, 1989, 2004, 2022, 2458
BlpI GCTNAGC 1 cut(s) 2433
BlsI GCNGC 8 cut(s) 70, 229, 517, 1603, 1990, 2005, 2023, 2459
BmcAI AGTACT 1 cut(s) 2154
Bme1390I CCNGG 7 cut(s) 73, 521, 963, 1259, 1307, 1449, 2018
Bme18I GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
BmeT110I CYCGRG 1 cut(s) 1809
BmgT120I GGNCC 7 cut(s) 216, 374, 429, 556, 607, 1061, 1787
BmiI GGNNCC 6 cut(s) 375, 430, 608, 922, 960, 2427
BmrFI CCNGG 7 cut(s) 73, 521, 963, 1259, 1307, 1449, 2018
BmsI GCATC 7 cut(s) 431, 459, 581, 719, 1112, 1477, 1750
BpiI GAAGAC 4 cut(s) 661, 972, 1242, 2150
BpmI CTGGAG 2 cut(s) 984, 1119
Bpu1102I GCTNAGC 1 cut(s) 2433
BpuMI CCSGG 3 cut(s) 73, 1259, 1307
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 1976
BsaJI CCNNGG 7 cut(s) 256, 519, 520, 855, 1448, 2016, 2160
BsaWI WCCGGW 1 cut(s) 1651
BsaXI ACNNNNNCTCC 2 cut(s) 1277, 1307
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 4 cut(s) 626, 770, 932, 2173
Bse21I CCTNAGG 1 cut(s) 1395
Bse3DI GCAATG 4 cut(s) 816, 1869, 1879, 2262
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 4 cut(s) 521, 963, 1449, 2018
BseDI CCNNGG 7 cut(s) 256, 519, 520, 855, 1448, 2016, 2160
BseGI GGATG 4 cut(s) 157, 572, 1306, 1492
BseJI GATNNNNATC 1 cut(s) 159
BseMI GCAATG 4 cut(s) 816, 1869, 1879, 2262
BseNI ACTGG 4 cut(s) 626, 770, 932, 2173
BseRI GAGGAG 4 cut(s) 100, 1560, 2541, 2643
BseSI GKGCMC 3 cut(s) 792, 1176, 1447
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 4 cut(s) 502, 1975, 1990, 2033
BseYI CCCAGC 4 cut(s) 1093, 2006, 2520, 2695
BsgI GTGCAG 1 cut(s) 2712
Bsh1236I CGCG 2 cut(s) 47, 116
Bsh1285I CGRYCG 2 cut(s) 45, 72
BshFI GGCC 4 cut(s) 71, 255, 376, 431
BshNI GGYRCC 2 cut(s) 920, 958
BsiEI CGRYCG 2 cut(s) 45, 72
BsiHKAI GWGCWC 5 cut(s) 191, 665, 1075, 1176, 1447
BsiHKCI CYCGRG 1 cut(s) 1809
BsiSI CCGG 6 cut(s) 50, 72, 270, 1258, 1306, 1652
BslFI GGGAC 9 cut(s) 88, 301, 470, 604, 620, 893, 1363, 2339, 2495
BsmAI GTCTC 3 cut(s) 323, 1976, 2298
BsmFI GGGAC 9 cut(s) 88, 301, 470, 604, 620, 893, 1363, 2339, 2495
BsnI GGCC 4 cut(s) 71, 255, 376, 431
Bso31I GGTCTC 1 cut(s) 1976
BsoBI CYCGRG 1 cut(s) 1809
Bsp1286I GDGCHC 8 cut(s) 191, 264, 665, 792, 1075, 1176, 1447, 2282
Bsp1720I GCTNAGC 1 cut(s) 2433
BspANI GGCC 4 cut(s) 71, 255, 376, 431
BspFNI CGCG 2 cut(s) 47, 116
BspHI TCATGA 1 cut(s) 2098
BspLI GGNNCC 6 cut(s) 375, 430, 608, 922, 960, 2427
BspMAI CTGCAG 2 cut(s) 895, 919
BspMI ACCTGC 1 cut(s) 2480
BspPI GGATC 8 cut(s) 102, 241, 313, 1212, 1661, 1821, 2103, 2325
BspT107I GGYRCC 2 cut(s) 920, 958
BspTI CTTAAG 3 cut(s) 1823, 1847, 2311
BspTNI GGTCTC 1 cut(s) 1976
BsrBI CCGCTC 2 cut(s) 89, 310
BsrDI GCAATG 4 cut(s) 816, 1869, 1879, 2262
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 4 cut(s) 626, 770, 932, 2173
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 7 cut(s) 256, 519, 520, 855, 1448, 2016, 2160
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 3 cut(s) 256, 855, 2160
Bst2UI CCWGG 4 cut(s) 521, 963, 1449, 2018
Bst4CI ACNGT 7 cut(s) 147, 598, 660, 886, 1414, 2065, 2365
Bst6I CTCTTC 2 cut(s) 583, 1650
BstACI GRCGYC 1 cut(s) 32
BstAFI CTTAAG 3 cut(s) 1823, 1847, 2311
BstC8I GCNNGC 5 cut(s) 225, 242, 915, 919, 1986
BstENI CCTNNNNNAGG 1 cut(s) 2126
BstF5I GGATG 4 cut(s) 157, 572, 1306, 1492
BstFNI CGCG 2 cut(s) 47, 116
BstH2I RGCGCY 2 cut(s) 1093, 1665
BstHHI GCGC 4 cut(s) 49, 1092, 1664, 1806
BstMAI GTCTC 3 cut(s) 323, 1976, 2298
BstMCI CGRYCG 2 cut(s) 45, 72
BstMWI GCNNNNNNNGC 4 cut(s) 38, 53, 428, 1610
BstNI CCWGG 4 cut(s) 521, 963, 1449, 2018
BstNSI RCATGY 2 cut(s) 1697, 2560
BstSCI CCNGG 7 cut(s) 71, 519, 961, 1257, 1305, 1447, 2016
BstSFI CTRYAG 7 cut(s) 168, 891, 915, 1704, 1939, 2148, 2334
BstSLI GKGCMC 3 cut(s) 792, 1176, 1447
BstUI CGCG 2 cut(s) 47, 116
BstV1I GCAGC 4 cut(s) 502, 1975, 1990, 2033
BstV2I GAAGAC 4 cut(s) 661, 972, 1242, 2150
BstX2I RGATCY 5 cut(s) 94, 126, 2108, 2723, 2748
BstXI CCANNNNNNTGG 1 cut(s) 1797
BstYI RGATCY 5 cut(s) 94, 126, 2108, 2723, 2748
BstZI CGGCCG 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 1395
BsuI GTATCC 3 cut(s) 960, 1600, 2721
BsuRI GGCC 4 cut(s) 71, 255, 376, 431
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 4 cut(s) 157, 572, 1306, 1492
BtsI GCAGTG 1 cut(s) 680
BtsIMutI CAGTG 4 cut(s) 633, 680, 1393, 1447
BveI ACCTGC 1 cut(s) 2480
Cac8I GCNNGC 5 cut(s) 225, 242, 915, 919, 1986
CaiI CAGNNNCTG 2 cut(s) 744, 890
CciI TCATGA 1 cut(s) 2098
CfoI GCGC 4 cut(s) 49, 1092, 1664, 1806
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 7 cut(s) 216, 374, 429, 556, 607, 1061, 1787
CseI GACGC 4 cut(s) 21, 62, 344, 966
Csp6I GTAC 6 cut(s) 61, 959, 1391, 2153, 2263, 2606
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 8 cut(s) 64, 816, 1314, 1694, 1778, 2099, 2507, 2557
CviQI GTAC 6 cut(s) 61, 959, 1391, 2153, 2263, 2606
DraI TTTAAA 1 cut(s) 2740
EaeI YGGCCR 1 cut(s) 69
EagI CGGCCG 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 583, 1650
EarI CTCTTC 2 cut(s) 583, 1650
EciI GGCGGA 2 cut(s) 480, 1619
Ecl136II GAGCTC 2 cut(s) 189, 1073
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 3 cut(s) 256, 855, 2160
Eco24I GRGCYC 4 cut(s) 191, 264, 1075, 2282
Eco31I GGTCTC 1 cut(s) 1976
Eco32I GATATC 2 cut(s) 298, 2501
Eco47I GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
Eco52I CGGCCG 1 cut(s) 69
Eco53kI GAGCTC 2 cut(s) 189, 1073
Eco57I CTGAAG 1 cut(s) 2111
Eco81I CCTNAGG 1 cut(s) 1395
Eco88I CYCGRG 1 cut(s) 1809
EcoICRI GAGCTC 2 cut(s) 189, 1073
EcoNI CCTNNNNNAGG 1 cut(s) 2126
EcoO109I RGGNCCY 2 cut(s) 374, 607
EcoRII CCWGG 4 cut(s) 519, 961, 1447, 2016
EcoRV GATATC 2 cut(s) 298, 2501
EcoT14I CCWWGG 3 cut(s) 256, 855, 2160
EcoT38I GRGCYC 4 cut(s) 191, 264, 1075, 2282
ErhI CCWWGG 3 cut(s) 256, 855, 2160
FaeI CATG 8 cut(s) 67, 819, 1317, 1697, 1781, 2102, 2510, 2560
FaqI GGGAC 9 cut(s) 88, 301, 470, 604, 620, 893, 1363, 2339, 2495
FatI CATG 8 cut(s) 63, 815, 1313, 1693, 1777, 2098, 2506, 2556
FauI CCCGC 3 cut(s) 76, 232, 2038
FbaI TGATCA 3 cut(s) 1368, 2095, 2383
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 8 cut(s) 69, 228, 516, 1602, 1989, 2004, 2022, 2458
FokI GGATG 4 cut(s) 164, 559, 1313, 1499
FriOI GRGCYC 4 cut(s) 191, 264, 1075, 2282
Fsp4HI GCNGC 8 cut(s) 69, 228, 516, 1602, 1989, 2004, 2022, 2458
FspBI CTAG 4 cut(s) 1143, 1551, 1992, 2232
GlaI GCGC 4 cut(s) 48, 1091, 1663, 1805
GluI GCNGC 8 cut(s) 69, 228, 516, 1602, 1989, 2004, 2022, 2458
GsaI CCCAGC 4 cut(s) 1097, 2010, 2524, 2699
GsuI CTGGAG 2 cut(s) 984, 1119
HaeII RGCGCY 2 cut(s) 1093, 1665
HaeIII GGCC 4 cut(s) 71, 255, 376, 431
HapII CCGG 6 cut(s) 50, 72, 270, 1258, 1306, 1652
HgaI GACGC 4 cut(s) 21, 62, 344, 966
HhaI GCGC 4 cut(s) 49, 1092, 1664, 1806
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 8 cut(s) 67, 819, 1317, 1697, 1781, 2102, 2510, 2560
Hin6I GCGC 4 cut(s) 47, 1090, 1662, 1804
HinP1I GCGC 4 cut(s) 47, 1090, 1662, 1804
HincII GTYRAC 3 cut(s) 183, 1894, 2119
HindII GTYRAC 3 cut(s) 183, 1894, 2119
HpaI GTTAAC 1 cut(s) 1894
HpaII CCGG 6 cut(s) 50, 72, 270, 1258, 1306, 1652
HphI GGTGA 9 cut(s) 31, 452, 536, 720, 759, 1130, 1598, 1830, 1879
Hpy166II GTNNAC 9 cut(s) 22, 183, 275, 728, 1174, 1391, 1445, 1894, 2119
Hpy8I GTNNAC 9 cut(s) 22, 183, 275, 728, 1174, 1391, 1445, 1894, 2119
Hpy99I CGWCG 2 cut(s) 37, 187
HpyCH4III ACNGT 7 cut(s) 147, 598, 660, 886, 1414, 2065, 2365
HpyCH4IV ACGT 3 cut(s) 848, 1793, 2631
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 53, 428, 1610
HpySE526I ACGT 3 cut(s) 848, 1793, 2631
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 8 cut(s) 67, 819, 1317, 1697, 1781, 2102, 2510, 2560
HspAI GCGC 4 cut(s) 47, 1090, 1662, 1804
KpnI GGTACC 1 cut(s) 962
Ksp22I TGATCA 3 cut(s) 1368, 2095, 2383
KspAI GTTAAC 1 cut(s) 1894
LmnI GCTCC 7 cut(s) 61, 86, 113, 1078, 1100, 1618, 1801
Lsp1109I GCAGC 4 cut(s) 502, 1975, 1990, 2033
LweI GCATC 7 cut(s) 431, 459, 581, 719, 1112, 1477, 1750
MaeI CTAG 4 cut(s) 1143, 1551, 1992, 2232
MaeII ACGT 3 cut(s) 848, 1793, 2631
MaeIII GTNAC 5 cut(s) 765, 1183, 1268, 1586, 2365
MbiI CCGCTC 2 cut(s) 89, 310
MfeI CAATTG 1 cut(s) 2705
MflI RGATCY 5 cut(s) 94, 126, 2108, 2723, 2748
MhlI GDGCHC 8 cut(s) 191, 264, 665, 792, 1075, 1176, 1447, 2282
MlyI GAGTC 6 cut(s) 188, 1295, 1301, 2485, 2530, 2644
MmeI TCCRAC 3 cut(s) 129, 583, 1814
MroXI GAANNNNTTC 3 cut(s) 508, 1413, 1686
MslI CAYNNNNRTG 1 cut(s) 1782
MspA1I CMGCKG 3 cut(s) 230, 1097, 1433
MspCI CTTAAG 3 cut(s) 1823, 1847, 2311
MspI CCGG 6 cut(s) 50, 72, 270, 1258, 1306, 1652
MspR9I CCNGG 7 cut(s) 73, 521, 963, 1259, 1307, 1449, 2018
MunI CAATTG 1 cut(s) 2705
MvaI CCWGG 4 cut(s) 521, 963, 1449, 2018
MvnI CGCG 2 cut(s) 47, 116
MwoI GCNNNNNNNGC 4 cut(s) 38, 53, 428, 1610
NciI CCSGG 3 cut(s) 73, 1259, 1307
NlaIII CATG 8 cut(s) 67, 819, 1317, 1697, 1781, 2102, 2510, 2560
NlaIV GGNNCC 6 cut(s) 375, 430, 608, 922, 960, 2427
NmuCI GTSAC 3 cut(s) 765, 1268, 1586
NspI RCATGY 2 cut(s) 1697, 2560
PagI TCATGA 1 cut(s) 2098
PaqCI CACCTGC 1 cut(s) 2480
PasI CCCWGGG 1 cut(s) 520
PciI ACATGT 1 cut(s) 2556
PdmI GAANNNNTTC 3 cut(s) 508, 1413, 1686
PfeI GAWTC 8 cut(s) 198, 304, 644, 679, 1460, 1682, 2083, 2446
PkrI GCNGC 8 cut(s) 70, 229, 517, 1603, 1990, 2005, 2023, 2459
PleI GAGTC 6 cut(s) 187, 1294, 1300, 2484, 2530, 2644
PpsI GAGTC 6 cut(s) 187, 1294, 1300, 2484, 2530, 2644
PpuMI RGGWCCY 1 cut(s) 607
PscI ACATGT 1 cut(s) 2556
PshBI ATTAAT 1 cut(s) 2135
PsiI TTATAA 2 cut(s) 1008, 1716
Psp124BI GAGCTC 2 cut(s) 191, 1075
Psp1406I AACGTT 1 cut(s) 1793
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 4 cut(s) 519, 961, 1447, 2016
PspFI CCCAGC 4 cut(s) 1093, 2006, 2520, 2695
PspGI CCWGG 4 cut(s) 519, 961, 1447, 2016
PspN4I GGNNCC 6 cut(s) 375, 430, 608, 922, 960, 2427
PspPI GGNCC 7 cut(s) 216, 374, 429, 556, 607, 1061, 1787
PspPPI RGGWCCY 1 cut(s) 607
PstI CTGCAG 2 cut(s) 895, 919
PstNI CAGNNNCTG 2 cut(s) 744, 890
PsuI RGATCY 5 cut(s) 94, 126, 2108, 2723, 2748
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 6 cut(s) 62, 960, 1392, 2154, 2264, 2607
RsaNI GTAC 6 cut(s) 61, 959, 1391, 2153, 2263, 2606
RseI CAYNNNNRTG 1 cut(s) 1782
SacI GAGCTC 2 cut(s) 191, 1075
SalI GTCGAC 1 cut(s) 181
SatI GCNGC 8 cut(s) 69, 228, 516, 1602, 1989, 2004, 2022, 2458
Sau96I GGNCC 7 cut(s) 216, 374, 429, 556, 607, 1061, 1787
SbfI CCTGCAGG 1 cut(s) 919
ScaI AGTACT 1 cut(s) 2154
SchI GAGTC 6 cut(s) 188, 1295, 1301, 2485, 2530, 2644
ScrFI CCNGG 7 cut(s) 73, 521, 963, 1259, 1307, 1449, 2018
SdaI CCTGCAGG 1 cut(s) 919
SduI GDGCHC 8 cut(s) 191, 264, 665, 792, 1075, 1176, 1447, 2282
SfaNI GCATC 7 cut(s) 431, 459, 581, 719, 1112, 1477, 1750
SfcI CTRYAG 7 cut(s) 168, 891, 915, 1704, 1939, 2148, 2334
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
SmiMI CAYNNNNRTG 1 cut(s) 1782
SmlI CTYRAG 3 cut(s) 1823, 1847, 2311
SmoI CTYRAG 3 cut(s) 1823, 1847, 2311
Sse8387I CCTGCAGG 1 cut(s) 919
SspI AATATT 2 cut(s) 1012, 2053
SspMI CTAG 4 cut(s) 1143, 1551, 1992, 2232
SstI GAGCTC 2 cut(s) 191, 1075
StyD4I CCNGG 7 cut(s) 71, 519, 961, 1257, 1305, 1447, 2016
StyI CCWWGG 3 cut(s) 256, 855, 2160
TaaI ACNGT 7 cut(s) 147, 598, 660, 886, 1414, 2065, 2365
TaiI ACGT 3 cut(s) 851, 1796, 2634
TaqI TCGA 7 cut(s) 123, 138, 182, 282, 865, 936, 2648
TatI WGTACW 1 cut(s) 2152
TauI GCSGC 4 cut(s) 71, 230, 1604, 2460
TfiI GAWTC 8 cut(s) 198, 304, 644, 679, 1460, 1682, 2083, 2446
TscAI CASTG 4 cut(s) 633, 680, 1393, 1447
TseFI GTSAC 3 cut(s) 765, 1268, 1586
TseI GCWGC 4 cut(s) 515, 1988, 2003, 2021
Tsp45I GTSAC 3 cut(s) 765, 1268, 1586
TspGWI ACGGA 4 cut(s) 48, 311, 2439, 2472
TspRI CASTG 4 cut(s) 633, 680, 1393, 1447
Vha464I CTTAAG 3 cut(s) 1823, 1847, 2311
VneI GTGCAC 2 cut(s) 1172, 1443
VpaK11BI GGWCC 5 cut(s) 216, 556, 607, 1061, 1787
VspI ATTAAT 1 cut(s) 2135
XagI CCTNNNNNAGG 1 cut(s) 2126
XapI RAATTY 9 cut(s) 392, 412, 444, 931, 1002, 1217, 1592, 1910, 2223
XceI RCATGY 2 cut(s) 1697, 2560
XmiI GTMKAC 1 cut(s) 182
XmnI GAANNNNTTC 3 cut(s) 508, 1413, 1686
XspI CTAG 4 cut(s) 1143, 1551, 1992, 2232
ZrmI AGTACT 1 cut(s) 2154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.