RchiOBHm_Chr1g0324141

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
11773116 .. 11776609
3494 bp
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UTR
Exon/CDS
Intron
PRQ55399

Sequence Viewer

Length: 174 bp
ATGCAGTTGTATTCATGGCTGTATTGGCCATCATGTTTGCGCGTTCTGGTTTTCTTTGGCCTCATTGTAGTTGGAGGTGCCAACATGATTGAGAAGGCATGGCATGGTGATCTGGTCTTTCACAAGCATGTCTTGATCCCTTTAAGTTTCTGTGTTTTCGCTTTTATCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.67

Weight (kDa)

8.8

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccII CGCG 1 cut(s) 42
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 26
AlwI GGATC 1 cut(s) 130
AoxI GGCC 2 cut(s) 26, 58
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 119
BalI TGGCCA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 77
BccI CCATC 1 cut(s) 37
BfaI CTAG 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 2 cut(s) 28, 60
BshNI GGYRCC 1 cut(s) 77
BsnI GGCC 2 cut(s) 28, 60
Bsp143I GATC 2 cut(s) 109, 135
BspACI CCGC 1 cut(s) 169
BspANI GGCC 2 cut(s) 28, 60
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 77
BssMI GATC 2 cut(s) 109, 135
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 112, 138
BstMBI GATC 2 cut(s) 109, 135
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 131
BstUI CGCG 1 cut(s) 42
BsuRI GGCC 2 cut(s) 28, 60
CfoI GCGC 1 cut(s) 42
CviAII CATG 6 cut(s) 15, 33, 85, 99, 104, 128
CviJI RGCY 3 cut(s) 19, 28, 60
CviKI_1 RGCY 3 cut(s) 19, 28, 60
DpnI GATC 2 cut(s) 111, 137
DpnII GATC 2 cut(s) 109, 135
EaeI YGGCCR 1 cut(s) 26
FaeI CATG 6 cut(s) 18, 36, 88, 102, 107, 131
FaiI YATR 6 cut(s) 16, 34, 86, 100, 105, 129
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 6 cut(s) 14, 32, 84, 98, 103, 127
FspBI CTAG 1 cut(s) 172
GlaI GCGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 28, 60
HhaI GCGC 1 cut(s) 42
Hin1II CATG 6 cut(s) 18, 36, 88, 102, 107, 131
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
Hsp92II CATG 6 cut(s) 18, 36, 88, 102, 107, 131
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 2 cut(s) 109, 135
LpnPI CCDG 2 cut(s) 32, 98
MaeI CTAG 1 cut(s) 172
MalI GATC 2 cut(s) 111, 137
MboI GATC 2 cut(s) 109, 135
MlsI TGGCCA 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 2 cut(s) 68, 71
Mox20I TGGCCA 1 cut(s) 28
MscI TGGCCA 1 cut(s) 28
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 28
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 2 cut(s) 109, 135
NlaIII CATG 6 cut(s) 18, 36, 88, 102, 107, 131
NlaIV GGNNCC 1 cut(s) 79
NspI RCATGY 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 143
Sau3AI GATC 2 cut(s) 109, 135
SetI ASST 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 126
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 172
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
XceI RCATGY 1 cut(s) 131
XspI CTAG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.