Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014751

Physical Location & Seq

Genomic Coordinates Reverse (-)

1086444 .. 1088129

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCCCCCACCTTTATCTGTGTCTCACTTCTTGTCCTACTTTTTGAATCTTGTGTGCGCACGTACTGGGAGGGACTGGATGGCATCACTTCACATGTTCTTGTCGAAATGGGATCTAAATACTCGTTCTACTCCATTCTTGCCCCACTTGACCAACAAATTCAGAACAGAGTTACTCTAAATTTGACCACTTTTGCCTCTCTGCTCGTTGTTGATCTTCCTTATTTTCTTGCTTACGTTGACTTTGAGTTGCGCCCAAGTCTCTTCACTGCTCGCGGGTTGATATCTTTCATCATTTGTTGTTTGACAGTAGTGGACATCTATGTTTTCAATGTGACAATACTACCTTTTGGGCATTCACAGCACTATCTGCAGATGCGGTTGTATACACAGTTGTATTGGCCATCGTGTCTTCGCTTTCTGGTTTTCTTTGGCCTCATTGCAGTTGGAGGTGCTAACATGATTGAGAAGGCATGGCATGGTGATCTGGTCTTTCACAAGCATGTCTTGATCCCTTTAAGTCTCTGTGTTTTCGCTTTTATCCGCTTGCACGACAAATATCGTAGATTGAGAAGGATGTGGAAAAGGGCAATGATTGTGATGCCAGTAGAGGAAAAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

24.22

Weight (kDa)

8.21

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35310 FvH4_5g35310 FvH4_5g35310 FvH4_5g35310
rosa_chinensis	RchiOBHm_Chr1g0324141 RchiOBHm_Chr7g0241651
rosa_laevigata	RLG00000000557
rosa_multiflora	Rmu_sc0003823.1_g000014 Rmu_sc0005017.1_g000011 Rmu_sc0006803.1_g000012
rosa_roxburghii	Rroxscaffold_3G00218850
rosa_rugosa	Rorug07G0345900 Rorug07G0345900
rosa_samantha	Rh1BG051500 Rh7AG500400 Rh7BG471600
rosa_wichuraiana	Rw7G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	1 cut(s)	276
AciI	CCGC	3 cut(s)	276, 379, 544
AclWI	GGATC	2 cut(s)	121, 505
AcoI	YGGCCR	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	159, 181
AfaI	GTAC	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	47, 331
Alw26I	GTCTC	3 cut(s)	28, 266, 527
AlwI	GGATC	2 cut(s)	121, 505
AoxI	GGCC	2 cut(s)	401, 433
ApoI	RAATTY	2 cut(s)	159, 181
AspLEI	GCGC	2 cut(s)	60, 255
AsuHPI	GGTGA	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	404
BccI	CCATC	2 cut(s)	74, 412
BcoDI	GTCTC	3 cut(s)	28, 266, 527
BfmI	CTRYAG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	3 cut(s)	93, 366, 591
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	63
Bse1I	ACTGG	3 cut(s)	71, 81, 605
Bse3DI	GCAATG	2 cut(s)	438, 597
BseGI	GGATG	3 cut(s)	85, 582, 625
BseMI	GCAATG	2 cut(s)	438, 597
BseNI	ACTGG	3 cut(s)	71, 81, 605
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	403, 435
BslFI	GGGAC	1 cut(s)	87
BsmAI	GTCTC	3 cut(s)	28, 266, 527
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	403, 435
Bsp143I	GATC	4 cut(s)	113, 214, 484, 510
BspACI	CCGC	3 cut(s)	276, 379, 544
BspANI	GGCC	2 cut(s)	403, 435
BspFNI	CGCG	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	375
BspPI	GGATC	2 cut(s)	121, 505
BsrDI	GCAATG	2 cut(s)	438, 597
BsrI	ACTGG	3 cut(s)	71, 81, 605
BssMI	GATC	4 cut(s)	113, 214, 484, 510
BssNAI	GTATAC	1 cut(s)	387
Bst1107I	GTATAC	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	310, 393
Bst6I	CTCTTC	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	274, 548
BstF5I	GGATG	3 cut(s)	85, 582, 625
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	60, 255
BstKTI	GATC	4 cut(s)	116, 217, 487, 513
BstMAI	GTCTC	3 cut(s)	28, 266, 527
BstMBI	GATC	4 cut(s)	113, 214, 484, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 370
BstNSI	RCATGY	2 cut(s)	98, 506
BstSFI	CTRYAG	1 cut(s)	371
BstUI	CGCG	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BstZ17I	GTATAC	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	403, 435
BtsCI	GGATG	3 cut(s)	85, 582, 625
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	274, 548
CfoI	GCGC	2 cut(s)	60, 255
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	5 cut(s)	95, 460, 474, 479, 503
CviJI	RGCY	2 cut(s)	403, 435
CviKI_1	RGCY	2 cut(s)	403, 435
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	4 cut(s)	115, 216, 486, 512
DpnII	GATC	4 cut(s)	113, 214, 484, 510
EaeI	YGGCCR	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco32I	GATATC	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	285
FaeI	CATG	5 cut(s)	98, 463, 477, 482, 506
FaiI	YATR	7 cut(s)	96, 324, 387, 461, 475, 480, 504
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	5 cut(s)	94, 459, 473, 478, 502
FauI	CCCGC	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	386
FokI	GGATG	2 cut(s)	92, 589
FspAI	RTGCGCAY	1 cut(s)	59
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	2 cut(s)	59, 254
HaeIII	GGCC	2 cut(s)	403, 435
HhaI	GCGC	2 cut(s)	60, 255
Hin1II	CATG	5 cut(s)	98, 463, 477, 482, 506
Hin6I	GCGC	2 cut(s)	58, 253
HinP1I	GCGC	2 cut(s)	58, 253
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	47
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	3 cut(s)	241, 316, 387
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	3 cut(s)	241, 316, 387
HpyAV	CCTTC	2 cut(s)	463, 567
HpyCH4III	ACNGT	2 cut(s)	310, 393
HpyCH4IV	ACGT	2 cut(s)	62, 237
HpyCH4V	TGCA	3 cut(s)	373, 443, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 370
HpySE526I	ACGT	2 cut(s)	62, 237
Hsp92II	CATG	5 cut(s)	98, 463, 477, 482, 506
HspAI	GCGC	2 cut(s)	58, 253
Kzo9I	GATC	4 cut(s)	113, 214, 484, 510
LpnPI	CCDG	5 cut(s)	52, 62, 407, 473, 618
LweI	GCATC	3 cut(s)	93, 366, 591
MaeII	ACGT	2 cut(s)	62, 237
MaeIII	GTNAC	2 cut(s)	172, 334
MalI	GATC	4 cut(s)	115, 216, 486, 512
MboI	GATC	4 cut(s)	113, 214, 484, 510
MboII	GAAGA	3 cut(s)	209, 256, 404
MflI	RGATCY	1 cut(s)	113
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	2 cut(s)	159, 181
MluNI	TGGCCA	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	5 cut(s)	64, 208, 443, 446, 604
Mox20I	TGGCCA	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	1 cut(s)	518
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	355
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	361, 370
NdeII	GATC	4 cut(s)	113, 214, 484, 510
NlaIII	CATG	5 cut(s)	98, 463, 477, 482, 506
NmuCI	GTSAC	1 cut(s)	334
NsbI	TGCGCA	1 cut(s)	59
NspI	RCATGY	2 cut(s)	98, 506
PciI	ACATGT	1 cut(s)	94
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	63
PscI	ACATGT	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	375
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	518
Sau3AI	GATC	4 cut(s)	113, 214, 484, 510
SetI	ASST	5 cut(s)	14, 65, 240, 349, 454
SfaNI	GCATC	3 cut(s)	93, 366, 591
SfcI	CTRYAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	2 cut(s)	159, 181
SsiI	CCGC	3 cut(s)	276, 379, 544
TaaI	ACNGT	2 cut(s)	310, 393
TaiI	ACGT	2 cut(s)	65, 240
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	159, 181
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	2 cut(s)	159, 181
XceI	RCATGY	2 cut(s)	98, 506
XmiI	GTMKAC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.