Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0014751

Physical Location & Seq

Genomic Coordinates Forward (+)

65940910 .. 65943166

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGGTGGTGGAGTTCAACGCCGAGTGGTCGAGGTGGAGCCTCCGTCAGCGCCTCAAGAATTTTCCACGTCTGTTGCTGCTCGCCATTAAGGATTGTTTGCGAGAGATGTCCCCCACCTTTATCTGTGTCTCACTTCTTGTCCTACTTTTTGAATCTTGTGTGCGCACTTGCTGGGAGGGACTGGAGAGCATCACTTCACATCTTCTTGTCGAAATGGGATCTAAATACTCGTTCTACTCCATTCTTCCCCCACTTGACCAACAAATTGTAGCAGAACAGAGTTACTCTAATTTGACCACTTTTGCCTCTCTGCTCTTTGCTGATCTTCCTTATTTTCTTGCTTACGTTGACTTTGAGTTGCGCCCAAGTCTCTTCACTGCTCGCGGGTTGATATCTTTCATCATTTGTTGTTTGACAGTAGTGGACATCTATGTTTTCAATGGGCATTCACAGCACTATTTGCAGATGCGGTTGTATAGACAGTTGTATTGGCTATCGTGTCTTCGCTTTCTGGTTTTCTTTGGCCTCATTGTAGTTGGAGGTGCTAACATGATTGAGAAGGCATGGCATGGTGATCTGGTCTTTCACAAGCATGTCTTGATCCCTTTAAGTCTCTGTGTTTTCGCTTTTATCCGCTTGCACGACAGATATCGTAGATTGAGAAGGATGTGGAAACGGGCAATGATTGTGATGCCAGTAGGTACGTCATATTGTTATATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

28.49

Weight (kDa)

8.86

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35310 FvH4_5g35310 FvH4_5g35310 FvH4_5g35310
rosa_chinensis	RchiOBHm_Chr1g0324141 RchiOBHm_Chr7g0241651
rosa_laevigata	RLG00000000557
rosa_multiflora	Rmu_sc0003823.1_g000014 Rmu_sc0005017.1_g000011 Rmu_sc0006803.1_g000012
rosa_roxburghii	Rroxscaffold_3G00218850
rosa_rugosa	Rorug07G0345900 Rorug07G0345900
rosa_samantha	Rh1BG051500 Rh7AG500400 Rh7BG471600
rosa_wichuraiana	Rw7G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccII	CGCG	1 cut(s)	387
AciI	CCGC	3 cut(s)	387, 472, 637
AclWI	GGATC	2 cut(s)	229, 598
AcsI	RAATTY	1 cut(s)	61
AfaI	GTAC	1 cut(s)	706
AgsI	TTSAA	3 cut(s)	19, 155, 442
AjiI	CACGTC	1 cut(s)	71
Alw26I	GTCTC	3 cut(s)	136, 377, 620
AlwI	GGATC	2 cut(s)	229, 598
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	61
AspLEI	GCGC	3 cut(s)	54, 168, 366
AsuHPI	GGTGA	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	66
BcoDI	GTCTC	3 cut(s)	136, 377, 620
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BmgBI	CACGTC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	41
BmsI	GCATC	3 cut(s)	201, 459, 684
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bse1I	ACTGG	2 cut(s)	189, 698
Bse3DI	GCAATG	1 cut(s)	690
BseGI	GGATG	1 cut(s)	675
BseMI	GCAATG	1 cut(s)	690
BseNI	ACTGG	2 cut(s)	189, 698
BseXI	GCAGC	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	528
BslFI	GGGAC	2 cut(s)	97, 195
BsmAI	GTCTC	3 cut(s)	136, 377, 620
BsmFI	GGGAC	2 cut(s)	97, 195
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	221, 325, 577, 603
BspACI	CCGC	3 cut(s)	387, 472, 637
BspANI	GGCC	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	2 cut(s)	229, 598
BsrDI	GCAATG	1 cut(s)	690
BsrI	ACTGG	2 cut(s)	189, 698
BssMI	GATC	4 cut(s)	221, 325, 577, 603
Bst4CI	ACNGT	2 cut(s)	421, 486
Bst6I	CTCTTC	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	84, 385, 641
BstF5I	GGATG	1 cut(s)	675
BstFNI	CGCG	1 cut(s)	387
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	3 cut(s)	54, 168, 366
BstKTI	GATC	4 cut(s)	224, 328, 580, 606
BstMAI	GTCTC	3 cut(s)	136, 377, 620
BstMBI	GATC	4 cut(s)	221, 325, 577, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	454, 463
BstNSI	RCATGY	1 cut(s)	599
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	528
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	675
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	3 cut(s)	84, 385, 641
CfoI	GCGC	3 cut(s)	54, 168, 366
Csp6I	GTAC	1 cut(s)	705
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	4 cut(s)	553, 567, 572, 596
CviJI	RGCY	3 cut(s)	42, 496, 528
CviKI_1	RGCY	3 cut(s)	42, 496, 528
CviQI	GTAC	1 cut(s)	705
DpnI	GATC	4 cut(s)	223, 327, 579, 605
DpnII	GATC	4 cut(s)	221, 325, 577, 603
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Eco32I	GATATC	2 cut(s)	396, 653
EcoRV	GATATC	2 cut(s)	396, 653
FaeI	CATG	4 cut(s)	556, 570, 575, 599
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FaqI	GGGAC	2 cut(s)	97, 195
FatI	CATG	4 cut(s)	552, 566, 571, 595
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	1 cut(s)	80
FspAI	RTGCGCAY	1 cut(s)	167
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	3 cut(s)	53, 167, 365
GluI	GCNGC	1 cut(s)	80
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	528
HhaI	GCGC	3 cut(s)	54, 168, 366
Hin1II	CATG	4 cut(s)	556, 570, 575, 599
Hin6I	GCGC	3 cut(s)	52, 166, 364
HinP1I	GCGC	3 cut(s)	52, 166, 364
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	352, 427
Hpy188III	TCNNGA	2 cut(s)	58, 601
Hpy8I	GTNNAC	2 cut(s)	352, 427
HpyAV	CCTTC	2 cut(s)	556, 660
HpyCH4III	ACNGT	2 cut(s)	421, 486
HpyCH4IV	ACGT	3 cut(s)	70, 348, 707
HpyCH4V	TGCA	2 cut(s)	466, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	454, 463
HpySE526I	ACGT	3 cut(s)	70, 348, 707
Hsp92II	CATG	4 cut(s)	556, 570, 575, 599
HspAI	GCGC	3 cut(s)	52, 166, 364
Kzo9I	GATC	4 cut(s)	221, 325, 577, 603
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	160, 170, 500, 566, 711
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	3 cut(s)	201, 459, 684
MaeII	ACGT	3 cut(s)	70, 348, 707
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	4 cut(s)	223, 327, 579, 605
MboI	GATC	4 cut(s)	221, 325, 577, 603
MboII	GAAGA	5 cut(s)	197, 239, 320, 367, 497
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	3 cut(s)	61, 267, 292
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	7 cut(s)	27, 53, 65, 172, 319, 536, 539
MseI	TTAA	2 cut(s)	90, 611
MslI	CAYNNNNRTG	1 cut(s)	594
Mva1269I	GAATGC	1 cut(s)	448
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	454, 463
NdeII	GATC	4 cut(s)	221, 325, 577, 603
NlaIII	CATG	4 cut(s)	556, 570, 575, 599
NlaIV	GGNNCC	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	49
NsbI	TGCGCA	1 cut(s)	167
NspI	RCATGY	1 cut(s)	599
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	90, 611
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	4 cut(s)	221, 325, 577, 603
SetI	ASST	8 cut(s)	9, 38, 73, 122, 351, 547, 706, 710
SfaNI	GCATC	3 cut(s)	201, 459, 684
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	61, 267, 292
SsiI	CCGC	3 cut(s)	387, 472, 637
TaaI	ACNGT	2 cut(s)	421, 486
TaiI	ACGT	3 cut(s)	73, 351, 710
TaqI	TCGA	2 cut(s)	32, 213
TasI	AATT	3 cut(s)	61, 267, 292
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	90, 611
Tru9I	TTAA	2 cut(s)	90, 611
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	391
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.