Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005017.1

Orthogroup ID

OG0014751

Physical Location & Seq

Genomic Coordinates Forward (+)

58153 .. 61207

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005017.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgtgggatttttggatgtgggtgaattgcagggaagctgattataatctcgaacaattgcccttctctgagaaagtcggagatcgagtactatgcgatgcttgccaaggttggagttcaccaccacaatggaactctgtttttggtcctacagcagaacggggttggccaactcttgcttcagctatgagcaacctcactccggctttaacattcatacttgccatcatcttcaggacagaaaggctgagtttgagaagcaccaacactcaagccaaagtcatgggtactttagtgtcaatatcaggtgctcttgtagtggttctctataagggcccaacagttctatccactacatcagaaagagattgggtaaagggtggcctattgctaactgtcgggtaccttttgttctctgcctggtctatactccagatgcagttgtattcacggttgtattggcaatcatgtcttcgctttctggttttctttggcctcattgtagttggaggtgccaacatgattgagaaggcatggcatggtgatctggtctttcacaagcatgtcttgatccctttaagtctttgtgttttcgcttttatccgcttgctcgacaaatatcgtaggttgagaaggatgaggaaaaaggcaatgattgtgatgccagtagatgagaagatggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

228

Amino Acids

26.14

Weight (kDa)

9.42

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35310 FvH4_5g35310 FvH4_5g35310 FvH4_5g35310
rosa_chinensis	RchiOBHm_Chr1g0324141 RchiOBHm_Chr7g0241651
rosa_laevigata	RLG00000000557
rosa_multiflora	Rmu_sc0003823.1_g000014 Rmu_sc0005017.1_g000011 Rmu_sc0006803.1_g000012
rosa_roxburghii	Rroxscaffold_3G00218850
rosa_rugosa	Rorug07G0345900 Rorug07G0345900
rosa_samantha	Rh1BG051500 Rh7AG500400 Rh7BG471600
rosa_wichuraiana	Rw7G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
Acc65I	GGTACC	1 cut(s)	402
AccB1I	GGYRCC	2 cut(s)	402, 512
AciI	CCGC	1 cut(s)	604
AclWI	GGATC	1 cut(s)	565
AcoI	YGGCCR	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	165, 217
AfaI	GTAC	3 cut(s)	90, 289, 404
AfiI	CCNNNNNNNGG	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	2 cut(s)	38, 185
AluI	AGCT	2 cut(s)	38, 185
Alw21I	GWGCWC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	565
AoxI	GGCC	4 cut(s)	167, 334, 382, 493
ApaI	GGGCCC	1 cut(s)	338
Asp718I	GGTACC	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	146, 334, 335
AsuHPI	GGTGA	3 cut(s)	34, 111, 554
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BalI	TGGCCA	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	402, 512
BanII	GRGCYC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	313
BccI	CCATC	2 cut(s)	233, 673
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BciT130I	CCWGG	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	150
BmcAI	AGTACT	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	3 cut(s)	146, 334, 335
BmiI	GGNNCC	3 cut(s)	336, 404, 514
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	3 cut(s)	88, 426, 651
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	21, 642
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	60, 239
BseNI	ACTGG	1 cut(s)	665
BseSI	GKGCMC	1 cut(s)	338
BshFI	GGCC	4 cut(s)	169, 336, 384, 495
BshNI	GGYRCC	2 cut(s)	402, 512
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	202
BsnI	GGCC	4 cut(s)	169, 336, 384, 495
Bsp120I	GGGCCC	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	313, 338
Bsp143I	GATC	3 cut(s)	82, 544, 570
BspACI	CCGC	1 cut(s)	604
BspANI	GGCC	4 cut(s)	169, 336, 384, 495
BspCNI	CTCAG	2 cut(s)	61, 240
BspLI	GGNNCC	3 cut(s)	336, 404, 514
BspPI	GGATC	1 cut(s)	565
BspT107I	GGYRCC	2 cut(s)	402, 512
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	3 cut(s)	82, 544, 570
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	3 cut(s)	343, 397, 453
BstC8I	GCNNGC	2 cut(s)	103, 608
BstDEI	CTNAG	2 cut(s)	69, 248
BstF5I	GGATG	2 cut(s)	21, 642
BstKTI	GATC	3 cut(s)	85, 547, 573
BstMBI	GATC	3 cut(s)	82, 544, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	464
BstXI	CCANNNNNNTGG	2 cut(s)	129, 283
BsuRI	GGCC	4 cut(s)	169, 336, 384, 495
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	21, 642
Cac8I	GCNNGC	2 cut(s)	103, 608
Cfr13I	GGNCC	3 cut(s)	146, 334, 335
Csp6I	GTAC	3 cut(s)	89, 288, 403
CviAII	CATG	6 cut(s)	283, 468, 520, 534, 539, 563
CviJI	RGCY	9 cut(s)	38, 169, 185, 206, 247, 275, 336, 384, 495
CviKI_1	RGCY	9 cut(s)	38, 169, 185, 206, 247, 275, 336, 384, 495
CviQI	GTAC	3 cut(s)	89, 288, 403
DdeI	CTNAG	2 cut(s)	69, 248
DpnI	GATC	3 cut(s)	84, 546, 572
DpnII	GATC	3 cut(s)	82, 544, 570
EaeI	YGGCCR	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	165, 217
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	6 cut(s)	286, 471, 523, 537, 542, 566
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FatI	CATG	6 cut(s)	282, 467, 519, 533, 538, 562
FokI	GGATG	2 cut(s)	28, 649
FriOI	GRGCYC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	169, 336, 384, 495
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	6 cut(s)	286, 471, 523, 537, 542, 566
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	3 cut(s)	34, 111, 554
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	70, 80, 361
Hpy188III	TCNNGA	4 cut(s)	50, 235, 433, 568
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	73, 523, 627
HpyCH4III	ACNGT	3 cut(s)	343, 397, 453
HpyCH4V	TGCA	2 cut(s)	30, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	69, 248
Hsp92II	CATG	6 cut(s)	286, 471, 523, 537, 542, 566
KpnI	GGTACC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	82, 544, 570
LweI	GCATC	3 cut(s)	88, 426, 651
MalI	GATC	3 cut(s)	84, 546, 572
MboI	GATC	3 cut(s)	82, 544, 570
MboII	GAAGA	2 cut(s)	223, 464
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	313, 338
MlsI	TGGCCA	1 cut(s)	169
MluCI	AATT	2 cut(s)	25, 56
MluNI	TGGCCA	1 cut(s)	169
MmeI	TCCRAC	3 cut(s)	58, 92, 487
MnlI	CCTC	4 cut(s)	206, 503, 506, 633
Mox20I	TGGCCA	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	169
MseI	TTAA	2 cut(s)	209, 578
MslI	CAYNNNNRTG	2 cut(s)	127, 561
Msp20I	TGGCCA	1 cut(s)	169
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	421
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	3 cut(s)	82, 544, 570
NlaIII	CATG	6 cut(s)	286, 471, 523, 537, 542, 566
NlaIV	GGNNCC	3 cut(s)	336, 404, 514
NspI	RCATGY	1 cut(s)	566
PsiI	TTATAA	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	336, 404, 514
PspOMI	GGGCCC	1 cut(s)	334
PspPI	GGNCC	3 cut(s)	146, 334, 335
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
RsaI	GTAC	3 cut(s)	90, 289, 404
RsaNI	GTAC	3 cut(s)	89, 288, 403
RseI	CAYNNNNRTG	2 cut(s)	127, 561
SaqAI	TTAA	2 cut(s)	209, 578
Sau3AI	GATC	3 cut(s)	82, 544, 570
Sau96I	GGNCC	3 cut(s)	146, 334, 335
ScaI	AGTACT	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	2 cut(s)	313, 338
SetI	ASST	8 cut(s)	40, 112, 187, 198, 310, 408, 514, 629
SfaNI	GCATC	3 cut(s)	88, 426, 651
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	127, 561
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	2 cut(s)	25, 56
SsiI	CCGC	1 cut(s)	604
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	343, 397, 453
TaqI	TCGA	3 cut(s)	51, 85, 612
TasI	AATT	2 cut(s)	25, 56
TatI	WGTACW	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	209, 578
Tru9I	TTAA	2 cut(s)	209, 578
TspDTI	ATGAA	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	146
XceI	RCATGY	1 cut(s)	566
ZrmI	AGTACT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.