Rh7BG471600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014751
Physical Location & Seq
Forward (+)
55648498 .. 55654403
5906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG471600.1

Sequence Viewer

Length: 717 bp
ATGGAGGTGGAGGACTTCAACGCCGAGTGGTCGAGGTGGAGCCTCCGTCAGCGCCTCAAGAATTTTCCACGTCTGTTGCTGCTCGCCATTAAGGATTGTTTGCGAGAGATGTCCCCCACCTTTATCTGTTTCTCACTTCTTGTCCTACTTTTTGAATCTTGTGTGCGCACTTACTGGGAGGGACTGGATAGCATCACTTCACATGTTCTTGTCGAAATGGGATCTAAATTCTCATTCTACTCCATTCTTGCCCCACTTGACCAACAAATTCAGAACAGAGTTACTCTAAATTTGACCTCTTTTGCCTCTCTGCTCTTTGCTGATCTTCCTTATTTTCTTGCTTACGTTGACTTTGAGTGGCGCCCAAGTCTCTTCACTGCTCGCGGGTTGATATCTTTCATCATTTGTTGTTTGACAGTAGTGGACATCTATGTTTTCAATGGGCATTCACAGCACTATTTGCAGATGCGGTTGTATACACAGTTGTATTGGCCATCGTGTCTTCGCTTTCTGGTTTTCTTTGGCCTCATTGTAGTTGGAGGTGCTAACATGATTGAGAAGGCATGGCATGGTGATCTGGTCTTTCACAAGCATGTCTTGATCCCTTTAAGTCTCTGTGTTTTCGCTTTTATCCGCTTGCACGACAGATATCGTAGATTGAGAAGGATGTGGAAAAGGGCAATGATTGTGATGCCAGTAGAGGAAAAGGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

28.2

Weight (kDa)

8.47

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 360
AccI GTMKAC 1 cut(s) 476
AccII CGCG 1 cut(s) 384
AciI CCGC 3 cut(s) 384, 469, 634
AclWI GGATC 2 cut(s) 229, 595
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 4 cut(s) 61, 227, 267, 289
AcyI GRCGYC 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 3 cut(s) 19, 155, 439
AjiI CACGTC 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 374, 617
AlwI GGATC 2 cut(s) 229, 595
AoxI GGCC 2 cut(s) 491, 523
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 4 cut(s) 61, 227, 267, 289
AspLEI GCGC 3 cut(s) 54, 168, 363
AsuHPI GGTGA 1 cut(s) 584
BalI TGGCCA 1 cut(s) 493
BanI GGYRCC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 494
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 374, 617
BfoI RGCGCY 2 cut(s) 55, 364
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 41, 362
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 3 cut(s) 201, 456, 681
BmuI ACTGGG 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bse1I ACTGG 3 cut(s) 179, 189, 695
Bse3DI GCAATG 1 cut(s) 687
BseGI GGATG 2 cut(s) 672, 715
BseMI GCAATG 1 cut(s) 687
BseNI ACTGG 3 cut(s) 179, 189, 695
BseXI GCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 2 cut(s) 493, 525
BshNI GGYRCC 1 cut(s) 360
BslFI GGGAC 2 cut(s) 97, 195
BsmAI GTCTC 2 cut(s) 374, 617
BsmFI GGGAC 2 cut(s) 97, 195
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 2 cut(s) 493, 525
Bsp143I GATC 4 cut(s) 221, 322, 574, 600
BspACI CCGC 3 cut(s) 384, 469, 634
BspANI GGCC 2 cut(s) 493, 525
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 41, 362
BspPI GGATC 2 cut(s) 229, 595
BspT107I GGYRCC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 687
BsrI ACTGG 3 cut(s) 179, 189, 695
BssMI GATC 4 cut(s) 221, 322, 574, 600
BssNAI GTATAC 1 cut(s) 477
BssNI GRCGYC 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 418, 483
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 361
BstAPI GCANNNNNTGC 1 cut(s) 460
BstC8I GCNNGC 3 cut(s) 84, 382, 638
BstF5I GGATG 2 cut(s) 672, 715
BstFNI CGCG 1 cut(s) 384
BstH2I RGCGCY 2 cut(s) 55, 364
BstHHI GCGC 3 cut(s) 54, 168, 363
BstKTI GATC 4 cut(s) 224, 325, 577, 603
BstMAI GTCTC 2 cut(s) 374, 617
BstMBI GATC 4 cut(s) 221, 322, 574, 600
BstMWI GCNNNNNNNGC 2 cut(s) 451, 460
BstNSI RCATGY 2 cut(s) 206, 596
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BstZ17I GTATAC 1 cut(s) 477
BsuRI GGCC 2 cut(s) 493, 525
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 672, 715
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 84, 382, 638
CfoI GCGC 3 cut(s) 54, 168, 363
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 5 cut(s) 203, 550, 564, 569, 593
CviJI RGCY 3 cut(s) 42, 493, 525
CviKI_1 RGCY 3 cut(s) 42, 493, 525
DinI GGCGCC 1 cut(s) 362
DpnI GATC 4 cut(s) 223, 324, 576, 602
DpnII GATC 4 cut(s) 221, 322, 574, 600
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco32I GATATC 2 cut(s) 393, 650
EcoRV GATATC 2 cut(s) 393, 650
EgeI GGCGCC 1 cut(s) 362
EheI GGCGCC 1 cut(s) 362
FaeI CATG 5 cut(s) 206, 553, 567, 572, 596
FaiI YATR 7 cut(s) 204, 432, 477, 551, 565, 570, 594
FalI AAGNNNNNCTT 2 cut(s) 581, 613
FaqI GGGAC 2 cut(s) 97, 195
FatI CATG 5 cut(s) 202, 549, 563, 568, 592
FauI CCCGC 1 cut(s) 377
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 1 cut(s) 679
Fsp4HI GCNGC 1 cut(s) 80
FspAI RTGCGCAY 1 cut(s) 167
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 3 cut(s) 53, 167, 362
GluI GCNGC 1 cut(s) 80
HaeII RGCGCY 2 cut(s) 55, 364
HaeIII GGCC 2 cut(s) 493, 525
HhaI GCGC 3 cut(s) 54, 168, 363
Hin1I GRCGYC 1 cut(s) 361
Hin1II CATG 5 cut(s) 206, 553, 567, 572, 596
Hin6I GCGC 3 cut(s) 52, 166, 361
HinP1I GCGC 3 cut(s) 52, 166, 361
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 349, 424, 477
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 2 cut(s) 58, 598
Hpy8I GTNNAC 3 cut(s) 349, 424, 477
HpyAV CCTTC 2 cut(s) 553, 657
HpyCH4III ACNGT 2 cut(s) 418, 483
HpyCH4IV ACGT 2 cut(s) 70, 345
HpyCH4V TGCA 2 cut(s) 463, 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 460
HpySE526I ACGT 2 cut(s) 70, 345
Hsp92I GRCGYC 1 cut(s) 361
Hsp92II CATG 5 cut(s) 206, 553, 567, 572, 596
HspAI GCGC 3 cut(s) 52, 166, 361
KasI GGCGCC 1 cut(s) 360
Kzo9I GATC 4 cut(s) 221, 322, 574, 600
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 160, 170, 497, 563, 708
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 3 cut(s) 201, 456, 681
MaeII ACGT 2 cut(s) 70, 345
MaeIII GTNAC 1 cut(s) 280
MalI GATC 4 cut(s) 223, 324, 576, 602
MboI GATC 4 cut(s) 221, 322, 574, 600
MboII GAAGA 3 cut(s) 317, 364, 494
MflI RGATCY 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 493
MluCI AATT 4 cut(s) 61, 227, 267, 289
MluNI TGGCCA 1 cut(s) 493
Mly113I GGCGCC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 517
Mox20I TGGCCA 1 cut(s) 493
MscI TGGCCA 1 cut(s) 493
MseI TTAA 2 cut(s) 90, 608
MslI CAYNNNNRTG 1 cut(s) 591
Msp20I TGGCCA 1 cut(s) 493
Mva1269I GAATGC 1 cut(s) 445
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 2 cut(s) 451, 460
NarI GGCGCC 1 cut(s) 361
NdeII GATC 4 cut(s) 221, 322, 574, 600
NlaIII CATG 5 cut(s) 206, 553, 567, 572, 596
NlaIV GGNNCC 2 cut(s) 41, 362
NmeAIII GCCGAG 1 cut(s) 49
NsbI TGCGCA 1 cut(s) 167
NspI RCATGY 2 cut(s) 206, 596
PciI ACATGT 1 cut(s) 202
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 81
PluTI GGCGCC 1 cut(s) 364
PscI ACATGT 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 41, 362
PsuI RGATCY 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 591
SaqAI TTAA 2 cut(s) 90, 608
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 4 cut(s) 221, 322, 574, 600
SetI ASST 7 cut(s) 9, 38, 73, 122, 299, 348, 544
SfaNI GCATC 3 cut(s) 201, 456, 681
SfoI GGCGCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 4 cut(s) 61, 227, 267, 289
SsiI CCGC 3 cut(s) 384, 469, 634
SspDI GGCGCC 1 cut(s) 360
TaaI ACNGT 2 cut(s) 418, 483
TaiI ACGT 2 cut(s) 73, 348
TaqI TCGA 2 cut(s) 32, 213
TasI AATT 4 cut(s) 61, 227, 267, 289
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 90, 608
Tru9I TTAA 2 cut(s) 90, 608
TscAI CASTG 1 cut(s) 382
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 388
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 382
XapI RAATTY 4 cut(s) 61, 227, 267, 289
XceI RCATGY 2 cut(s) 206, 596
XmiI GTMKAC 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.