Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006803.1

Orthogroup ID

OG0014751

Physical Location & Seq

Genomic Coordinates Reverse (-)

56187 .. 57564

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006803.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgaggaatgctaaagcaaatgaaggaacttcagatcctgttccagggttgaaagaggagaagaaaacttttgttaaggtgcacgagaccaagcacttctgtttaactttatgctccgttcttgcctcacatgaccaagaaattatagaacggggttggccaactcttgcttcagctatgagcaacctcactccgacttttacattcatacttgccatcatcttcaggatggaaaggctgcgtttgagaagcaccaacactcaagccaaagtcatggctactttagtgtcaatatcaggtgctcttgtagtggttctctataagggcccaacaattctatccactacatcagaaagagattgggtaaagggtggcctattgctaactgttgggaatgacatgcggacacactgccaggcgggctacagcctcagcgtcggaccgcctccagatcgccaccgacgcgccgccacgcgccgcgtcaagatagcatcagaagcctctgaagctgggaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

172

Amino Acids

18.88

Weight (kDa)

9.76

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35310 FvH4_5g35310 FvH4_5g35310 FvH4_5g35310
rosa_chinensis	RchiOBHm_Chr1g0324141 RchiOBHm_Chr7g0241651
rosa_laevigata	RLG00000000557
rosa_multiflora	Rmu_sc0003823.1_g000014 Rmu_sc0005017.1_g000011 Rmu_sc0006803.1_g000012
rosa_roxburghii	Rroxscaffold_3G00218850
rosa_rugosa	Rorug07G0345900 Rorug07G0345900
rosa_samantha	Rh1BG051500 Rh7AG500400 Rh7BG471600
rosa_wichuraiana	Rw7G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	465, 475, 480
AciI	CCGC	5 cut(s)	403, 419, 443, 468, 478
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	15, 156, 208
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	43, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	2 cut(s)	176, 509
AluI	AGCT	2 cut(s)	176, 509
Alw21I	GWGCWC	2 cut(s)	84, 304
Alw26I	GTCTC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	3 cut(s)	158, 325, 373
ApaI	GGGCCC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	238
AspLEI	GCGC	2 cut(s)	467, 477
AspS9I	GGNCC	3 cut(s)	325, 326, 440
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	84, 329
BalI	TGGCCA	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	84, 304
BbvCI	CCTCAGC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	223, 224
BciT130I	CCWGG	2 cut(s)	45, 416
BcoDI	GTCTC	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	424
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	3 cut(s)	239, 468, 478
BlsI	GCNGC	3 cut(s)	240, 469, 479
Bme1390I	CCNGG	2 cut(s)	45, 416
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	325, 326, 440
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	45, 416
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	45, 416
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	445
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	2 cut(s)	84, 329
BseXI	GCAGC	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	509
Bsh1236I	CGCG	3 cut(s)	465, 475, 480
BshFI	GGCC	3 cut(s)	160, 327, 375
BsiHKAI	GWGCWC	2 cut(s)	84, 304
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	3 cut(s)	160, 327, 375
Bso31I	GGTCTC	1 cut(s)	80
Bsp120I	GGGCCC	1 cut(s)	325
Bsp1286I	GDGCHC	3 cut(s)	84, 304, 329
Bsp143I	GATC	2 cut(s)	34, 451
BspACI	CCGC	5 cut(s)	403, 419, 443, 468, 478
BspANI	GGCC	3 cut(s)	160, 327, 375
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	3 cut(s)	465, 475, 480
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	2 cut(s)	34, 451
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	45, 416
Bst4CI	ACNGT	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	431
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	3 cut(s)	465, 475, 480
BstHHI	GCGC	2 cut(s)	467, 477
BstKTI	GATC	2 cut(s)	37, 454
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	34, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	420, 462, 497, 506
BstNI	CCWGG	2 cut(s)	45, 416
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	43, 414
BstSFI	CTRYAG	1 cut(s)	424
BstSLI	GKGCMC	2 cut(s)	84, 329
BstUI	CGCG	3 cut(s)	465, 475, 480
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	160, 327, 375
BtsCI	GGATG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	2 cut(s)	467, 477
Cfr13I	GGNCC	3 cut(s)	325, 326, 440
CpoI	CGGWCCG	1 cut(s)	440
CseI	GACGC	3 cut(s)	424, 469, 471
CspI	CGGWCCG	1 cut(s)	440
CviAII	CATG	3 cut(s)	131, 274, 400
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	2 cut(s)	36, 453
DpnII	GATC	2 cut(s)	34, 451
EaeI	YGGCCR	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	3 cut(s)	15, 156, 208
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	43, 414
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	3 cut(s)	134, 277, 403
FaiI	YATR	8 cut(s)	112, 132, 146, 179, 209, 275, 321, 401
FatI	CATG	3 cut(s)	130, 273, 399
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	239, 468, 478
FokI	GGATG	1 cut(s)	241
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	239, 468, 478
GlaI	GCGC	2 cut(s)	466, 476
GluI	GCNGC	3 cut(s)	239, 468, 478
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	160, 327, 375
HgaI	GACGC	3 cut(s)	424, 469, 471
HhaI	GCGC	2 cut(s)	467, 477
Hin1II	CATG	3 cut(s)	134, 277, 403
Hin6I	GCGC	2 cut(s)	465, 475
HinP1I	GCGC	2 cut(s)	465, 475
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	6 cut(s)	34, 195, 352, 440, 496, 505
Hpy188III	TCNNGA	3 cut(s)	226, 449, 484
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	2 cut(s)	440, 465
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	4 cut(s)	420, 462, 497, 506
HpyF3I	CTNAG	1 cut(s)	431
Hsp92II	CATG	3 cut(s)	134, 277, 403
HspAI	GCGC	2 cut(s)	465, 475
Kzo9I	GATC	2 cut(s)	34, 451
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	9 cut(s)	30, 51, 57, 211, 282, 401, 428, 462, 495
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	500
MalI	GATC	2 cut(s)	36, 453
MboI	GATC	2 cut(s)	34, 451
MboII	GAAGA	2 cut(s)	73, 214
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	3 cut(s)	84, 304, 329
MlsI	TGGCCA	1 cut(s)	160
MluCI	AATT	2 cut(s)	141, 333
MluNI	TGGCCA	1 cut(s)	160
MmeI	TCCRAC	2 cut(s)	218, 418
MnlI	CCTC	6 cut(s)	49, 136, 197, 440, 456, 511
Mox20I	TGGCCA	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	160
MseI	TTAA	2 cut(s)	75, 104
Msp20I	TGGCCA	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	45, 416
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	2 cut(s)	45, 416
MvnI	CGCG	3 cut(s)	465, 475, 480
MwoI	GCNNNNNNNGC	4 cut(s)	420, 462, 497, 506
NdeII	GATC	2 cut(s)	34, 451
NlaIII	CATG	3 cut(s)	134, 277, 403
NlaIV	GGNNCC	1 cut(s)	327
NspI	RCATGY	1 cut(s)	403
PctI	GAATGC	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	240, 469, 479
Psp6I	CCWGG	2 cut(s)	43, 414
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	43, 414
PspN4I	GGNNCC	1 cut(s)	327
PspOMI	GGGCCC	1 cut(s)	325
PspPI	GGNCC	3 cut(s)	325, 326, 440
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	34
Rsr2I	CGGWCCG	1 cut(s)	440
RsrII	CGGWCCG	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	75, 104
SatI	GCNGC	3 cut(s)	239, 468, 478
Sau3AI	GATC	2 cut(s)	34, 451
Sau96I	GGNCC	3 cut(s)	325, 326, 440
ScrFI	CCNGG	2 cut(s)	45, 416
SduI	GDGCHC	3 cut(s)	84, 304, 329
SetI	ASST	5 cut(s)	81, 178, 189, 301, 511
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	141, 333
SsiI	CCGC	5 cut(s)	403, 419, 443, 468, 478
StyD4I	CCNGG	2 cut(s)	43, 414
TaaI	ACNGT	1 cut(s)	388
TasI	AATT	2 cut(s)	141, 333
TauI	GCSGC	2 cut(s)	470, 480
Tru1I	TTAA	2 cut(s)	75, 104
Tru9I	TTAA	2 cut(s)	75, 104
TscAI	CASTG	1 cut(s)	416
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	36, 196
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	416
VneI	GTGCAC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	440
XagI	CCTNNNNNAGG	1 cut(s)	42
XceI	RCATGY	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.