RLG00000000557

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014751
Physical Location & Seq
Reverse (-)
1974143 .. 1976477
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000557

Sequence Viewer

Length: 570 bp
ATGGAGGTGGTGGACTTGAACGCCGAGTGGTCGAGGTGGAGCCTCCGTCAGCGCCTCGAGAACTTTCCACGTCTGTTGCTGCTCGACATTAAGGATTTTTTGCGAGTGGTGTCCCCCGCCTTTATCTGTTTCTCACTTCTTGTCCTCCTTTTTGAATCTTGTGTGCGCACTTACTGGGAGGGACTGGATAGCATCACTTCACATGTTCTTGTCGAAATGGGATCTAAATACTCGTTCTACTCCATTTTTGCCCGACTTGACCAACAAATTCAGAACAGAGTTACTCTAAATTTGACCACTTTTGCCTCTCTGCTCTTTGCTGATCTTCCTTATTTTCTTGCTTACGTTGACTTTGAGTTGCGCCCAAGATTTGCCAAATCGTTTAACCAATTATTGTGGTCCTGTTCTTTGCAGTATTTCCTACTCTTGTTTCTTACATGGACTCCTAGTTTACTTTTTTGGCTTTATCTAGTGAAAAAAGGAAAAAAAAAAAGACATACTTTTCGTAGATTGAGAAGGATGTGGAAAAGGGCGATGATTGTGATGCCAGTAGAGGAAAAGGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

22.79

Weight (kDa)

9.57

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 167
AciI CCGC 1 cut(s) 117
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 2 cut(s) 267, 289
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 2 cut(s) 19, 155
AjiI CACGTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 229
Ama87I CYCGRG 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 2 cut(s) 267, 289
ArsI GACNNNNNNTTYG 2 cut(s) 486, 518
AspLEI GCGC 3 cut(s) 54, 168, 363
AspS9I GGNCC 1 cut(s) 399
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 66
BfaI CTAG 2 cut(s) 447, 470
BfoI RGCGCY 1 cut(s) 55
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 399
BmeT110I CYCGRG 1 cut(s) 56
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 41
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 2 cut(s) 201, 534
BmuI ACTGGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 427, 457
Bse1I ACTGG 3 cut(s) 179, 189, 548
BseGI GGATG 2 cut(s) 525, 568
BseNI ACTGG 3 cut(s) 179, 189, 548
BseXI GCAGC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 97, 195
BsmFI GGGAC 2 cut(s) 97, 195
BsoBI CYCGRG 1 cut(s) 56
Bsp143I GATC 2 cut(s) 221, 322
BspACI CCGC 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 1 cut(s) 229
BsrI ACTGG 3 cut(s) 179, 189, 548
BssMI GATC 2 cut(s) 221, 322
BstF5I GGATG 2 cut(s) 525, 568
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 3 cut(s) 54, 168, 363
BstKTI GATC 2 cut(s) 224, 325
BstMBI GATC 2 cut(s) 221, 322
BstNSI RCATGY 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 548
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 525, 568
CfoI GCGC 3 cut(s) 54, 168, 363
Cfr13I GGNCC 1 cut(s) 399
CspCI CAANNNNNGTGG 4 cut(s) 57, 92, 377, 412
CviAII CATG 2 cut(s) 203, 438
CviJI RGCY 2 cut(s) 42, 463
CviKI_1 RGCY 2 cut(s) 42, 463
DpnI GATC 2 cut(s) 223, 324
DpnII GATC 2 cut(s) 221, 322
Eco47I GGWCC 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 56
FaeI CATG 2 cut(s) 206, 441
FaiI YATR 3 cut(s) 204, 439, 498
FalI AAGNNNNNCTT 2 cut(s) 484, 516
FaqI GGGAC 2 cut(s) 97, 195
FatI CATG 2 cut(s) 202, 437
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 1 cut(s) 532
Fsp4HI GCNGC 1 cut(s) 80
FspAI RTGCGCAY 1 cut(s) 167
FspBI CTAG 2 cut(s) 447, 470
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 3 cut(s) 53, 167, 362
GluI GCNGC 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 55
HhaI GCGC 3 cut(s) 54, 168, 363
Hin1II CATG 2 cut(s) 206, 441
Hin6I GCGC 3 cut(s) 52, 166, 361
HinP1I GCGC 3 cut(s) 52, 166, 361
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 2 cut(s) 155, 442
Hpy166II GTNNAC 3 cut(s) 13, 349, 452
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 3 cut(s) 13, 349, 452
HpyAV CCTTC 1 cut(s) 510
HpyCH4IV ACGT 2 cut(s) 70, 345
HpyCH4V TGCA 1 cut(s) 412
HpySE526I ACGT 2 cut(s) 70, 345
Hsp92II CATG 2 cut(s) 206, 441
HspAI GCGC 3 cut(s) 52, 166, 361
Kzo9I GATC 2 cut(s) 221, 322
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 160, 170, 415, 561
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 2 cut(s) 201, 534
MaeI CTAG 2 cut(s) 447, 470
MaeII ACGT 2 cut(s) 70, 345
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 223, 324
MboI GATC 2 cut(s) 221, 322
MboII GAAGA 1 cut(s) 317
MflI RGATCY 1 cut(s) 221
MluCI AATT 3 cut(s) 267, 289, 389
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 7 cut(s) 27, 53, 65, 155, 172, 316, 547
MseI TTAA 2 cut(s) 90, 384
NdeII GATC 2 cut(s) 221, 322
NlaIII CATG 2 cut(s) 206, 441
NlaIV GGNNCC 1 cut(s) 41
NmeAIII GCCGAG 1 cut(s) 49
NsbI TGCGCA 1 cut(s) 167
NspI RCATGY 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 56
PciI ACATGT 1 cut(s) 202
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PscI ACATGT 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 399
PsuI RGATCY 1 cut(s) 221
SaqAI TTAA 2 cut(s) 90, 384
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 221, 322
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 1 cut(s) 436
SetI ASST 4 cut(s) 9, 38, 73, 348
SfaNI GCATC 2 cut(s) 201, 534
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 1 cut(s) 399
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 3 cut(s) 267, 289, 389
SsiI CCGC 1 cut(s) 117
SspMI CTAG 2 cut(s) 447, 470
TaiI ACGT 2 cut(s) 73, 348
TaqI TCGA 4 cut(s) 32, 57, 84, 213
TasI AATT 3 cut(s) 267, 289, 389
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 90, 384
Tru9I TTAA 2 cut(s) 90, 384
TseI GCWGC 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 399
XapI RAATTY 2 cut(s) 267, 289
XceI RCATGY 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 56
XspI CTAG 2 cut(s) 447, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.