Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001630

Physical Location & Seq

Genomic Coordinates Reverse (-)

38404355 .. 38407527

Gene Structure 3173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0345900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAAGGCAGAGGCCGAATATATTGGTGACTGGCACACCCGGAACAGGGAAGACAACAATGTCGTCTGCCTTAGCAGAAGAGACACAGCTTCGCCACATCAACATAGGTGAGTTGGTCAAGGCAAAGAGCCTCCATGATGGCTGGGACAATGAGCTCGACTGTTACGTCATTAATGAAGACCTGGTGTGCGACGAGCTTGAAGATATGATGGAAGAAGGAGGGAACATAGTGGACTACCACGGTTGCGATTTCTTCCCTGAGAGATGGTTTGATCTTGTGGTTGTGCTTCAGACTGACAACACTGTCTTGTATGACCGTTTGACTCAAAGAGGGTATTCCGGCTCTAAACTTTCCAACAATGTTGAATGTGAAATATTTCAAACTCTGCTTGAGGAGGCAAAAGAGAGCTACCCAGAAAATATTGTACAACCTCTGAAGAGTGATAGCATTGAAGACATTTCAACGAATCTCGCTTCTTTGACTGATTGGGTGAGGAGGTGGCAACCATCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

172

Amino Acids

19.56

Weight (kDa)

4.36

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	8 - 128	3.7e-34	AAA domain
AAA_17	PF13207	11 - 81	6.2e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09180 AT1G56330
fragaria_vesca	FvH4_4g19421 FvH4_5g39351 FvH4_5g39351 FvH4_6g07290
malus_domestica	MD03G1296300.v1.1 MD04G1194800.v1.1 MD11G1315700.v1.1 MD12G1207000.v1.1 MD16G1157700.v1.1
prunus_persica	Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.6G314700_v2.0.a1 Prupe.8G271000_v2.0.a1 Prupe.8G271000_v2.0.a1
pyrus_communis	pycom03g23450 pycom04g17210 pycom11g27560 pycom13g13430 pycom16g13270
rosa_chinensis	RchiOBHm_Chr3g0456901 RchiOBHm_Chr4g0424461 RchiOBHm_Chr7g0241641
rosa_laevigata	RLG00000000558 RLG00000007472 RLG00000025269
rosa_multiflora	Rmu_sc0000133.1_g000014 Rmu_sc0003567.1_g000007 Rmu_sc0019791.1_g000003 Rmu_sc0026340.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218860 Rroxscaffold_5G00366400 Rroxscaffold_6G00422390
rosa_rugosa	Rorug03G0016900 Rorug07G0345900
rosa_samantha	Rh3AG077100 Rh3BG078900 Rh3CG078800 Rh3DG080800 Rh4BG259400 Rh4CG270700 Rh4DG253900 Rh7BG471500 Rh7CG516900
rosa_wichuraiana	Rw3G006620 Rw4G021940 Rw7G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
AcuI	CTGAAG	2 cut(s)	275, 458
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	47, 48
AgsI	TTSAA	5 cut(s)	203, 368, 383, 455, 465
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	91, 157, 199, 411
AluI	AGCT	4 cut(s)	91, 157, 199, 411
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	14
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	3 cut(s)	40, 122, 505
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	3 cut(s)	59, 186, 462
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	4 cut(s)	134, 205, 261, 517
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	42, 185
BmrFI	CCNGG	2 cut(s)	42, 185
BpiI	GAAGAC	3 cut(s)	59, 186, 462
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 48
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	47, 48
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	410, 511
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	42, 342
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	47, 48
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	4 cut(s)	164, 245, 307, 320
Bst6I	CTCTTC	2 cut(s)	75, 434
BstAUI	TGTACA	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	73, 261, 516
BstDSI	CCRYGG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	40, 183
BstV2I	GAAGAC	3 cut(s)	59, 186, 462
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	8 cut(s)	16, 91, 132, 144, 157, 199, 345, 411
CviKI_1	RGCY	8 cut(s)	16, 91, 132, 144, 157, 199, 345, 411
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	3 cut(s)	73, 261, 516
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DrdI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
DseDI	GACNNNNNNGTC	3 cut(s)	61, 167, 305
Eam1104I	CTCTTC	2 cut(s)	75, 434
EarI	CTCTTC	2 cut(s)	75, 434
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	275, 458
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	1 cut(s)	140
FaiI	YATR	6 cut(s)	23, 107, 138, 209, 230, 315
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	159
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	2 cut(s)	42, 342
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	2 cut(s)	325, 469
HpaII	CCGG	2 cut(s)	42, 342
HphI	GGTGA	3 cut(s)	40, 122, 505
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	294, 438
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	4 cut(s)	164, 245, 307, 320
HpyCH4IV	ACGT	1 cut(s)	168
HpyF3I	CTNAG	3 cut(s)	73, 261, 516
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	18, 33, 55, 130, 170, 197, 273, 355, 429
MabI	ACCWGGT	1 cut(s)	183
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	28, 164
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	8 cut(s)	64, 92, 191, 215, 227, 247, 451, 467
MhlI	GDGCHC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	9 cut(s)	6, 143, 215, 326, 388, 391, 444, 489, 492
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	174
MspI	CCGG	2 cut(s)	42, 342
MspR9I	CCNGG	2 cut(s)	42, 185
MvaI	CCWGG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	183
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	42, 185
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	9 cut(s)	93, 112, 159, 171, 186, 201, 413, 436, 503
SexAI	ACCWGGT	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SspI	AATATT	2 cut(s)	378, 424
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	40, 183
TaaI	ACNGT	4 cut(s)	164, 245, 307, 320
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	159
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.