Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001630

Physical Location & Seq

Genomic Coordinates Reverse (-)

65938690 .. 65940489

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTTCTGTTCGACTGGTTCTACGGCGTGCTCGCTTCCCTCGGTCTGTGGCAGAAGGAGGCCAAGATCTTGTTCCTAGGGCTCGATAATGCCGGCAAGACCACCTTGCTTCACATGCTCAAAGATGAGAGGCTGGTGCAGCATCAACCTACGCAATATCCTACGTCCGAGGAGTTGAGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGAGTCTGGAAGGATTACTACGCAAAGGTAGATGCTGTGGTGTACCTTGTGGATGCCTTTGACAAGGAGAGGTTTGCTGAATCAAAGAAGGAACTAGATGCGCTCCTTTCTGATGAAGCCCTTGCCAGTGTCCCATTTCTAATTCTGGGGAACAAGATCGACATACCATATGCTGCTTCAGAAGATGAGTTGCGATACCACCTTGGACTGTCCAACTTCACCACAGGCAAGGGGAAGGTAAACCTAGCCGACTCAAATGTCCGTCCGTTAGAAGTCTTCATGTGCAGCATTGTACGTAAAATGGGCTATGGCGATGGTTTTAAGTGGCTCTCTCAATACATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

6.91

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 192	8.8e-64	ADP-ribosylation factor family
SRPRB	PF09439	19 - 144	6e-08	Signal recognition particle receptor beta subunit
Roc	PF08477	22 - 132	2.5e-08	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	22 - 130	4.3e-07	50S ribosome-binding GTPase
Ras	PF00071	22 - 134	9.6e-07	Ras family
G-alpha	PF00503	51 - 133	1.6e-08	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09180 AT1G56330
fragaria_vesca	FvH4_4g19421 FvH4_5g39351 FvH4_5g39351 FvH4_6g07290
malus_domestica	MD03G1296300.v1.1 MD04G1194800.v1.1 MD11G1315700.v1.1 MD12G1207000.v1.1 MD16G1157700.v1.1
prunus_persica	Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.6G314700_v2.0.a1 Prupe.8G271000_v2.0.a1 Prupe.8G271000_v2.0.a1
pyrus_communis	pycom03g23450 pycom04g17210 pycom11g27560 pycom13g13430 pycom16g13270
rosa_chinensis	RchiOBHm_Chr3g0456901 RchiOBHm_Chr4g0424461 RchiOBHm_Chr7g0241641
rosa_laevigata	RLG00000000558 RLG00000007472 RLG00000025269
rosa_multiflora	Rmu_sc0000133.1_g000014 Rmu_sc0003567.1_g000007 Rmu_sc0019791.1_g000003 Rmu_sc0026340.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218860 Rroxscaffold_5G00366400 Rroxscaffold_6G00422390
rosa_rugosa	Rorug03G0016900 Rorug07G0345900
rosa_samantha	Rh3AG077100 Rh3BG078900 Rh3CG078800 Rh3DG080800 Rh4BG259400 Rh4CG270700 Rh4DG253900 Rh7BG471500 Rh7CG516900
rosa_wichuraiana	Rw3G006620 Rw4G021940 Rw7G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	278, 528
AgsI	TTSAA	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
Alw21I	GWGCWC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	240
AoxI	GGCC	2 cut(s)	60, 201
ApeKI	GCWGC	3 cut(s)	139, 407, 519
AspA2I	CCTAGG	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	445
AvrII	CCTAGG	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	151, 394, 531
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	1 cut(s)	40
BfaI	CTAG	3 cut(s)	77, 329, 479
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	3 cut(s)	140, 408, 520
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	3 cut(s)	141, 409, 521
BmsI	GCATC	4 cut(s)	151, 256, 277, 322
BpiI	GAAGAC	1 cut(s)	502
BsaAI	YACGTR	1 cut(s)	530
BsaJI	CCNNGG	4 cut(s)	40, 76, 168, 436
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	20, 360
BseDI	CCNNGG	4 cut(s)	40, 76, 168, 436
BseGI	GGATG	1 cut(s)	292
BseNI	ACTGG	2 cut(s)	20, 360
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	151, 394, 531
BsgI	GTGCAG	2 cut(s)	158, 538
BshFI	GGCC	2 cut(s)	62, 203
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	62, 203
Bsp1286I	GDGCHC	2 cut(s)	33, 84
Bsp143I	GATC	2 cut(s)	66, 390
BspANI	GGCC	2 cut(s)	62, 203
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	20, 360
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	40, 76, 168, 436
BssMI	GATC	2 cut(s)	66, 390
BssT1I	CCWWGG	2 cut(s)	76, 436
Bst4CI	ACNGT	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	4 cut(s)	29, 33, 94, 232
BstF5I	GGATG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	69, 393
BstMBI	GATC	2 cut(s)	66, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 139
BstNSI	RCATGY	1 cut(s)	118
BstSNI	TACGTA	1 cut(s)	530
BstV1I	GCAGC	3 cut(s)	151, 394, 531
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	62, 203
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	4 cut(s)	29, 33, 94, 232
CaiI	CAGNNNCTG	1 cut(s)	240
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	277, 527
CviAII	CATG	2 cut(s)	115, 514
CviJI	RGCY	8 cut(s)	62, 82, 133, 203, 353, 482, 540, 562
CviKI_1	RGCY	8 cut(s)	62, 82, 133, 203, 353, 482, 540, 562
CviQI	GTAC	2 cut(s)	277, 527
DpnI	GATC	2 cut(s)	68, 392
DpnII	GATC	2 cut(s)	66, 390
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
Eco105I	TACGTA	1 cut(s)	530
Eco130I	CCWWGG	2 cut(s)	76, 436
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	76, 436
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	76, 436
FaeI	CATG	2 cut(s)	118, 517
FaiI	YATR	6 cut(s)	116, 398, 403, 405, 515, 543
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	114, 513
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	140, 408, 520
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	140, 408, 520
FspBI	CTAG	3 cut(s)	77, 329, 479
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	3 cut(s)	140, 408, 520
HaeIII	GGCC	2 cut(s)	62, 203
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	2 cut(s)	118, 517
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	3 cut(s)	237, 314, 485
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	2 cut(s)	277, 475
Hpy188I	TCNGA	4 cut(s)	169, 225, 346, 415
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	277, 475
HpyAV	CCTTC	4 cut(s)	49, 238, 316, 463
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	2 cut(s)	164, 529
HpyCH4V	TGCA	2 cut(s)	139, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 139
HpySE526I	ACGT	2 cut(s)	164, 529
Hsp92II	CATG	2 cut(s)	118, 517
HspAI	GCGC	1 cut(s)	335
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	66, 390
LmnI	GCTCC	1 cut(s)	342
LpnPI	CCDG	6 cut(s)	106, 119, 226, 365, 373, 444
Lsp1109I	GCAGC	3 cut(s)	151, 394, 531
LweI	GCATC	4 cut(s)	151, 256, 277, 322
MaeI	CTAG	3 cut(s)	77, 329, 479
MaeII	ACGT	2 cut(s)	164, 529
MalI	GATC	2 cut(s)	68, 392
MboI	GATC	2 cut(s)	66, 390
MboII	GAAGA	2 cut(s)	428, 502
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	33, 84
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	2 cut(s)	246, 479
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	6 cut(s)	50, 52, 123, 163, 209, 297
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	2 cut(s)	555, 576
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	115, 139
NaeI	GCCGGC	1 cut(s)	94
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	66, 390
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	118, 517
NspI	RCATGY	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	203
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	141, 409, 521
PleI	GAGTC	2 cut(s)	245, 479
PpsI	GAGTC	2 cut(s)	245, 479
Ppu21I	YACGTR	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	2 cut(s)	278, 528
RsaNI	GTAC	2 cut(s)	277, 527
SaqAI	TTAA	2 cut(s)	555, 576
SatI	GCNGC	3 cut(s)	140, 408, 520
Sau3AI	GATC	2 cut(s)	66, 390
SchI	GAGTC	2 cut(s)	246, 479
SduI	GDGCHC	2 cut(s)	33, 84
SfaNI	GCATC	4 cut(s)	151, 256, 277, 322
SnaBI	TACGTA	1 cut(s)	530
Sse9I	AATT	1 cut(s)	375
SseBI	AGGCCT	1 cut(s)	203
SspMI	CTAG	3 cut(s)	77, 329, 479
StuI	AGGCCT	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	76, 436
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	2 cut(s)	167, 532
TaqI	TCGA	3 cut(s)	12, 84, 393
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	555, 576
Tru9I	TTAA	2 cut(s)	555, 576
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	3 cut(s)	139, 407, 519
TspDTI	ATGAA	2 cut(s)	363, 502
TspGWI	ACGGA	2 cut(s)	485, 489
TspRI	CASTG	1 cut(s)	367
XceI	RCATGY	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	3 cut(s)	77, 329, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.