Prupe.1G122600_v2.0.a1
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001630
Physical Location & Seq
Forward (+)
9617434 .. 9620581
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G122600.3

Sequence Viewer

Length: 582 bp
ATGTTCCTGGTCGACTGGTTCTATGGCGTCCTTGCCTCTCTGGGCCTGTGGCAGAAGGAGGCCAAGATTCTGTTTTTGGGCCTCGACAACGCCGGCAAGACCACGCTCCTCCACATGTTGAAGGATGAGAGACTAGTGCAGCATCAGCCGACCCAGCACCCAACTTCGGAGGAATTGAGCATTGGGAAGATTAAATTCAAGGCTTTTGATTTGGGTGGCCACCAGATCGCTCGCAGAGTCTGGAAGGATTACTATGCTAAGGTGGATGCAGTGGTTTACCTGGTTGATGCATACGACAAGGATCGTTTTGCAGAATCAAAGAAGGAGCTGGATGCACTCCTTTCAGATGAGAGCCTGGCAACTGTTCCATTTCTTGTGCTGGGCAACAAGATTGACATACCCTATGCTGCTTCAGAAGAGGAGCTGCGATATCATCTAGGACTGACTAACTTCACTACTGGGAAGGGAAAAGTGAATCTTACGGACACCACTGTCCGCCCCCTAGAGGTTTTCATGTGCAGTATCGTCCGCAAGATGGGGTACGGGGATGGCTTCAAGTGGGTCTCCCAATATATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

194

Amino Acids

22.0

Weight (kDa)

6.97

Isoelectric Point (pI)

23.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 491
AccI GTMKAC 1 cut(s) 12
AciI CCGC 2 cut(s) 496, 529
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 3 cut(s) 166, 505, 535
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 3 cut(s) 121, 199, 556
AhlI ACTAGT 1 cut(s) 133
AjnI CCWGG 3 cut(s) 6, 279, 354
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 2 cut(s) 328, 424
AluI AGCT 2 cut(s) 328, 424
Alw26I GTCTC 2 cut(s) 124, 568
AlwI GGATC 1 cut(s) 309
AlwNI CAGNNNCTG 1 cut(s) 240
AoxI GGCC 4 cut(s) 43, 60, 79, 217
ApeKI GCWGC 3 cut(s) 139, 407, 424
ApoI RAATTY 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 43, 79
BalI TGGCCA 1 cut(s) 219
BbvI GCAGC 3 cut(s) 151, 394, 411
BccI CCATC 2 cut(s) 529, 542
BciT130I CCWGG 3 cut(s) 8, 281, 356
BcoDI GTCTC 2 cut(s) 124, 568
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 3 cut(s) 134, 437, 503
BisI GCNGC 3 cut(s) 140, 408, 425
BlsI GCNGC 3 cut(s) 141, 409, 426
Bme1390I CCNGG 3 cut(s) 8, 281, 356
BmgT120I GGNCC 2 cut(s) 43, 79
BmrFI CCNGG 3 cut(s) 8, 281, 356
BmrI ACTGGG 1 cut(s) 468
BmsI GCATC 4 cut(s) 151, 256, 277, 322
BmuI ACTGGG 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 568
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 505, 535
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 20, 463
BseBI CCWGG 3 cut(s) 8, 281, 356
BseGI GGATG 4 cut(s) 130, 271, 337, 553
BseLI CCNNNNNNNGG 3 cut(s) 166, 505, 535
BseNI ACTGG 2 cut(s) 20, 463
BseRI GAGGAG 2 cut(s) 98, 434
BseXI GCAGC 3 cut(s) 151, 394, 411
BseYI CCCAGC 2 cut(s) 153, 379
BsgI GTGCAG 2 cut(s) 158, 538
BshFI GGCC 4 cut(s) 45, 62, 81, 219
BsiSI CCGG 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 166, 505, 535
BsmAI GTCTC 2 cut(s) 124, 568
BsnI GGCC 4 cut(s) 45, 62, 81, 219
Bso31I GGTCTC 1 cut(s) 568
Bsp143I GATC 2 cut(s) 225, 301
BspACI CCGC 2 cut(s) 496, 529
BspANI GGCC 4 cut(s) 45, 62, 81, 219
BspPI GGATC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 2 cut(s) 20, 463
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 2 cut(s) 225, 301
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 3 cut(s) 8, 281, 356
Bst4CI ACNGT 2 cut(s) 364, 493
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 94, 232
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 4 cut(s) 130, 271, 337, 553
BstKTI GATC 2 cut(s) 228, 304
BstMAI GTCTC 2 cut(s) 124, 568
BstMBI GATC 2 cut(s) 225, 301
BstMWI GCNNNNNNNGC 2 cut(s) 145, 154
BstNI CCWGG 3 cut(s) 8, 281, 356
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 6, 279, 354
BstV1I GCAGC 3 cut(s) 151, 394, 411
BsuRI GGCC 4 cut(s) 45, 62, 81, 219
BtsCI GGATG 4 cut(s) 130, 271, 337, 553
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 276, 489
Cac8I GCNNGC 2 cut(s) 94, 232
CaiI CAGNNNCTG 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 43, 79
CseI GACGC 1 cut(s) 16
CsiI ACCWGGT 1 cut(s) 279
Csp6I GTAC 1 cut(s) 541
CviAII CATG 2 cut(s) 115, 514
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 227, 303
DpnII GATC 2 cut(s) 225, 301
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 568
Eco32I GATATC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 396
EcoRII CCWGG 3 cut(s) 6, 279, 354
EcoRV GATATC 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 292
FaeI CATG 2 cut(s) 118, 517
FaiI YATR 8 cut(s) 24, 116, 255, 292, 398, 405, 515, 573
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FatI CATG 2 cut(s) 114, 513
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 140, 408, 425
FokI GGATG 4 cut(s) 137, 278, 344, 560
Fsp4HI GCNGC 3 cut(s) 140, 408, 425
FspBI CTAG 3 cut(s) 134, 437, 503
GluI GCNGC 3 cut(s) 140, 408, 425
GsaI CCCAGC 2 cut(s) 157, 383
HaeIII GGCC 4 cut(s) 45, 62, 81, 219
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 2 cut(s) 118, 517
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 4 cut(s) 67, 237, 314, 475
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 2 cut(s) 13, 277
Hpy188I TCNGA 3 cut(s) 169, 346, 415
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 13, 277
HpyAV CCTTC 5 cut(s) 49, 115, 238, 316, 457
HpyCH4III ACNGT 2 cut(s) 364, 493
HpyCH4V TGCA 6 cut(s) 139, 269, 290, 311, 335, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 154
HpyF3I CTNAG 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 2 cut(s) 118, 517
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 2 cut(s) 225, 301
LmnI GCTCC 3 cut(s) 111, 325, 421
Lsp1109I GCAGC 3 cut(s) 151, 394, 411
LweI GCATC 4 cut(s) 151, 256, 277, 322
MabI ACCWGGT 1 cut(s) 279
MaeI CTAG 3 cut(s) 134, 437, 503
MalI GATC 2 cut(s) 227, 303
MboI GATC 2 cut(s) 225, 301
MboII GAAGA 2 cut(s) 199, 428
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 2 cut(s) 173, 194
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 7 cut(s) 46, 52, 92, 119, 163, 412, 499
Mox20I TGGCCA 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 292
MroNI GCCGGC 1 cut(s) 92
MscI TGGCCA 1 cut(s) 219
MseI TTAA 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 219
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 3 cut(s) 8, 281, 356
MvaI CCWGG 3 cut(s) 8, 281, 356
MwoI GCNNNNNNNGC 2 cut(s) 145, 154
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 2 cut(s) 225, 301
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 2 cut(s) 118, 517
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 94
PfeI GAWTC 3 cut(s) 67, 314, 475
PkrI GCNGC 3 cut(s) 141, 409, 426
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PscI ACATGT 1 cut(s) 114
Psp6I CCWGG 3 cut(s) 6, 279, 354
PspFI CCCAGC 2 cut(s) 153, 379
PspGI CCWGG 3 cut(s) 6, 279, 354
PspPI GGNCC 2 cut(s) 43, 79
PstNI CAGNNNCTG 1 cut(s) 240
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
SalI GTCGAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 140, 408, 425
Sau3AI GATC 2 cut(s) 225, 301
Sau96I GGNCC 2 cut(s) 43, 79
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 3 cut(s) 8, 281, 356
SetI ASST 5 cut(s) 264, 282, 330, 426, 510
SexAI ACCWGGT 1 cut(s) 279
SfaNI GCATC 4 cut(s) 151, 256, 277, 322
SpeI ACTAGT 1 cut(s) 133
Sse9I AATT 2 cut(s) 173, 194
SsiI CCGC 2 cut(s) 496, 529
SspMI CTAG 3 cut(s) 134, 437, 503
StyD4I CCNGG 3 cut(s) 6, 279, 354
TaaI ACNGT 2 cut(s) 364, 493
TaqI TCGA 2 cut(s) 12, 84
TasI AATT 2 cut(s) 173, 194
TfiI GAWTC 3 cut(s) 67, 314, 475
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 2 cut(s) 276, 496
TseI GCWGC 3 cut(s) 139, 407, 424
TspDTI ATGAA 1 cut(s) 502
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 276, 496
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 3 cut(s) 134, 437, 503
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.