Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001630

Physical Location & Seq

Genomic Coordinates Forward (+)

42760021 .. 42762233

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1315700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTTCTGTTCGACTGGTTCTACGGTGTGCTCGCGTCCCTCGGTCTCTGGCAGAAAGAGGCCAAGATCTTGTTCCTCGGCCTCGATAACGCCGGCAAGACCACCTTGCTCCACATGTTGAAAGACGAGAGACTGGTGCAGCACCAGCCCACGCAGTATCCAACATCGGAGGAGTTGAGCATTGGGAAAATCAAGTTCAAGGCGTTTGATTTGGGAGGTCATCAGATTGCTCGCAGAGTTTGGAGGGATTACTATGCAAAGGTAGATGCTGTGGTGTACCTGGTGGATGCCTATGACAAGGAGCGGTTTGCAGAATCCAAAAAGGAACTAGATGCACTCCTTTCGGATGAAGCCCTAGCCACTGTCCCATTTCTAATTCTAGGGAACAAGATTGACCTACCATCTGCTGCCTCGGAGGATGAGTTGCGATATCACCTTGGGCTGACCAACTTCACCACTGGCAAGGGGAAGGTAAACCTAGCGGACTCAACTGTCCGTCCGCTAGAAGTGTTTATGTGCAGCATTGTACGGAAAATGGGGTACGGCGATGGTTTCAAATGGCTCTCTCAATACATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

194

Amino Acids

21.99

Weight (kDa)

6.91

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 192	2e-64	ADP-ribosylation factor family
SRPRB	PF09439	19 - 144	9.3e-08	Signal recognition particle receptor beta subunit
Roc	PF08477	22 - 132	3.6e-08	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	22 - 135	3.2e-07	Ras family
MMR_HSR1	PF01926	22 - 130	3.9e-07	50S ribosome-binding GTPase
G-alpha	PF00503	50 - 133	2.4e-08	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09180 AT1G56330
fragaria_vesca	FvH4_4g19421 FvH4_5g39351 FvH4_5g39351 FvH4_6g07290
malus_domestica	MD03G1296300.v1.1 MD04G1194800.v1.1 MD11G1315700.v1.1 MD12G1207000.v1.1 MD16G1157700.v1.1
prunus_persica	Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.6G314700_v2.0.a1 Prupe.8G271000_v2.0.a1 Prupe.8G271000_v2.0.a1
pyrus_communis	pycom03g23450 pycom04g17210 pycom11g27560 pycom13g13430 pycom16g13270
rosa_chinensis	RchiOBHm_Chr3g0456901 RchiOBHm_Chr4g0424461 RchiOBHm_Chr7g0241641
rosa_laevigata	RLG00000000558 RLG00000007472 RLG00000025269
rosa_multiflora	Rmu_sc0000133.1_g000014 Rmu_sc0003567.1_g000007 Rmu_sc0019791.1_g000003 Rmu_sc0026340.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218860 Rroxscaffold_5G00366400 Rroxscaffold_6G00422390
rosa_rugosa	Rorug03G0016900 Rorug07G0345900
rosa_samantha	Rh3AG077100 Rh3BG078900 Rh3CG078800 Rh3DG080800 Rh4BG259400 Rh4CG270700 Rh4DG253900 Rh7BG471500 Rh7CG516900
rosa_wichuraiana	Rw3G006620 Rw4G021940 Rw7G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccBSI	CCGCTC	1 cut(s)	304
AccII	CGCG	1 cut(s)	35
AciI	CCGC	3 cut(s)	304, 482, 500
AfaI	GTAC	3 cut(s)	278, 528, 542
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	121, 199, 556
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	50, 124
AoxI	GGCC	2 cut(s)	60, 79
ApeKI	GCWGC	3 cut(s)	139, 407, 519
AsuHPI	GGTGA	2 cut(s)	425, 445
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	151, 394, 531
BccI	CCATC	2 cut(s)	409, 542
BceAI	ACGGC	1 cut(s)	559
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	50, 124
BfaI	CTAG	5 cut(s)	329, 356, 380, 479, 503
BfuI	GTATCC	1 cut(s)	168
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	3 cut(s)	140, 408, 520
BlsI	GCNGC	3 cut(s)	141, 409, 521
Bme1390I	CCNGG	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	3 cut(s)	256, 277, 322
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	4 cut(s)	40, 76, 411, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	20, 138, 463
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	4 cut(s)	40, 76, 411, 436
BseGI	GGATG	3 cut(s)	292, 352, 424
BseNI	ACTGG	3 cut(s)	20, 138, 463
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	151, 394, 531
BsgI	GTGCAG	2 cut(s)	158, 538
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	62, 81
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	22, 350
BsmAI	GTCTC	2 cut(s)	50, 124
BsmFI	GGGAC	2 cut(s)	22, 350
BsnI	GGCC	2 cut(s)	62, 81
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	3 cut(s)	304, 482, 500
BspANI	GGCC	2 cut(s)	62, 81
BspFNI	CGCG	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	20, 138, 463
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	40, 76, 411, 436
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	26, 364, 493
BstC8I	GCNNGC	3 cut(s)	33, 94, 232
BstF5I	GGATG	3 cut(s)	292, 352, 424
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	2 cut(s)	50, 124
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	151, 394, 531
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	62, 81
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	3 cut(s)	292, 352, 424
BtsIMutI	CAGTG	2 cut(s)	360, 456
Cac8I	GCNNGC	3 cut(s)	33, 94, 232
Cfr10I	RCCGGY	1 cut(s)	92
CseI	GACGC	1 cut(s)	24
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	3 cut(s)	277, 527, 541
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	7 cut(s)	62, 81, 148, 353, 359, 442, 562
CviKI_1	RGCY	7 cut(s)	62, 81, 148, 353, 359, 442, 562
CviQI	GTAC	3 cut(s)	277, 527, 541
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	279
EcoRV	GATATC	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	116, 255, 294, 515
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	2 cut(s)	22, 350
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	140, 408, 520
FokI	GGATG	3 cut(s)	299, 359, 431
Fsp4HI	GCNGC	3 cut(s)	140, 408, 520
FspBI	CTAG	5 cut(s)	329, 356, 380, 479, 503
GluI	GCNGC	3 cut(s)	140, 408, 520
HaeIII	GGCC	2 cut(s)	62, 81
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	2 cut(s)	314, 485
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	425, 445
Hpy166II	GTNNAC	2 cut(s)	277, 475
Hpy188I	TCNGA	4 cut(s)	169, 225, 346, 415
Hpy8I	GTNNAC	2 cut(s)	277, 475
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	3 cut(s)	26, 364, 493
HpyCH4V	TGCA	5 cut(s)	139, 257, 311, 335, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	114, 301
LpnPI	CCDG	7 cut(s)	34, 106, 119, 158, 266, 293, 444
Lsp1109I	GCAGC	3 cut(s)	151, 394, 531
LweI	GCATC	3 cut(s)	256, 277, 322
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	5 cut(s)	329, 356, 380, 479, 503
MalI	GATC	1 cut(s)	68
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	1 cut(s)	66
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	9 cut(s)	50, 52, 86, 92, 163, 209, 237, 409, 421
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	145
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	66
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	57
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	141, 409, 521
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PscI	ACATGT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	3 cut(s)	278, 528, 542
RsaNI	GTAC	3 cut(s)	277, 527, 541
SatI	GCNGC	3 cut(s)	140, 408, 520
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	8 cut(s)	107, 220, 264, 282, 399, 438, 474, 480
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	3 cut(s)	256, 277, 322
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	3 cut(s)	304, 482, 500
SspMI	CTAG	5 cut(s)	329, 356, 380, 479, 503
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	3 cut(s)	26, 364, 493
TaqI	TCGA	2 cut(s)	12, 84
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	2 cut(s)	367, 463
TseI	GCWGC	3 cut(s)	139, 407, 519
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	2 cut(s)	485, 544
TspRI	CASTG	2 cut(s)	367, 463
XceI	RCATGY	1 cut(s)	118
XspI	CTAG	5 cut(s)	329, 356, 380, 479, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.