Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001630

Physical Location & Seq

Genomic Coordinates Reverse (-)

22472005 .. 22474003

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G271000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTTCTGTTCGACTGGTTCTACGGTGTGCTGGCCTCCCTGGGTCTCTGGCAGAAAGAGGCCAAGATCTTGTTCCTTGGCCTCGATAATGCCGGCAAGACCACCTTGCTTCACATGTTGAAAGACGAGAGACTGGTACAGCATCAGCCTACGCAGTATCCAACATCAGAGGAGTTGAGCATTGGGAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGGAGAGATTACTATGCAAAGGTAGATGCTGTGGTGTACCTTGTGGATGCCTATGACAAGGAGCGGTTTGCTGAATCAAAAAAGGAACTTGATGCACTCCTTTCTGATGAAGCTCTTGCCAATGTCCCATTTCTAATTTTAGGGAACAAGATTGACATACCATATGCTGCCTCAGAGGAGGAGTTGCGACACCACCTTGGGCTGACCAACTTCACCACTGGCAAGGGCAAGGTAAACCTAACAGACTCAAATGTCCGTCCATTAGAAGTATTTATGTGCAGCATTGTACGAAAAATGGGGTATGGTGATGGTTTCAAATGGCTCTCTCAATACATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

194

Amino Acids

22.11

Weight (kDa)

6.97

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09180 AT1G56330
fragaria_vesca	FvH4_4g19421 FvH4_5g39351 FvH4_5g39351 FvH4_6g07290
malus_domestica	MD03G1296300.v1.1 MD04G1194800.v1.1 MD11G1315700.v1.1 MD12G1207000.v1.1 MD16G1157700.v1.1
prunus_persica	Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.6G314700_v2.0.a1 Prupe.8G271000_v2.0.a1 Prupe.8G271000_v2.0.a1
pyrus_communis	pycom03g23450 pycom04g17210 pycom11g27560 pycom13g13430 pycom16g13270
rosa_chinensis	RchiOBHm_Chr3g0456901 RchiOBHm_Chr4g0424461 RchiOBHm_Chr7g0241641
rosa_laevigata	RLG00000000558 RLG00000007472 RLG00000025269
rosa_multiflora	Rmu_sc0000133.1_g000014 Rmu_sc0003567.1_g000007 Rmu_sc0019791.1_g000003 Rmu_sc0026340.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218860 Rroxscaffold_5G00366400 Rroxscaffold_6G00422390
rosa_rugosa	Rorug03G0016900 Rorug07G0345900
rosa_samantha	Rh3AG077100 Rh3BG078900 Rh3CG078800 Rh3DG080800 Rh4BG259400 Rh4CG270700 Rh4DG253900 Rh7BG471500 Rh7CG516900
rosa_wichuraiana	Rw3G006620 Rw4G021940 Rw7G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	1 cut(s)	304
AfaI	GTAC	3 cut(s)	138, 278, 528
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	121, 199, 556
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	50, 124
AlwNI	CAGNNNCTG	1 cut(s)	240
AoxI	GGCC	4 cut(s)	33, 60, 79, 201
ApeKI	GCWGC	2 cut(s)	407, 519
AsuHPI	GGTGA	2 cut(s)	445, 557
BbvI	GCAGC	2 cut(s)	394, 531
BccI	CCATC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	50, 124
BfuI	GTATCC	1 cut(s)	168
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	2 cut(s)	408, 520
BlsI	GCNGC	2 cut(s)	409, 521
Bme1390I	CCNGG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	4 cut(s)	151, 256, 277, 322
BpmI	CTGGAG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	4 cut(s)	39, 40, 76, 436
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	20, 138, 463
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	4 cut(s)	39, 40, 76, 436
BseGI	GGATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	3 cut(s)	20, 138, 463
BseRI	GAGGAG	3 cut(s)	185, 431, 434
BseXI	GCAGC	2 cut(s)	394, 531
BsgI	GTGCAG	1 cut(s)	538
BshFI	GGCC	4 cut(s)	35, 62, 81, 203
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	50, 124
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	4 cut(s)	35, 62, 81, 203
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	4 cut(s)	35, 62, 81, 203
BspCNI	CTCAG	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	20, 138, 463
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	39, 40, 76, 436
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	2 cut(s)	76, 436
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	33, 94, 232
BstDEI	CTNAG	1 cut(s)	412
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	2 cut(s)	50, 124
BstMBI	GATC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	394, 531
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	4 cut(s)	35, 62, 81, 203
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	33, 94, 232
CaiI	CAGNNNCTG	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	137, 277, 527
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	8 cut(s)	35, 62, 81, 148, 203, 353, 442, 562
CviKI_1	RGCY	8 cut(s)	35, 62, 81, 148, 203, 353, 442, 562
CviQI	GTAC	3 cut(s)	137, 277, 527
DdeI	CTNAG	1 cut(s)	412
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
Eco130I	CCWWGG	2 cut(s)	76, 436
Eco147I	AGGCCT	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	76, 436
ErhI	CCWWGG	2 cut(s)	76, 436
FaeI	CATG	1 cut(s)	118
FaiI	YATR	8 cut(s)	116, 255, 294, 398, 403, 405, 515, 543
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	114
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	408, 520
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	408, 520
GluI	GCNGC	2 cut(s)	408, 520
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	4 cut(s)	35, 62, 81, 203
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	2 cut(s)	314, 485
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	445, 557
Hpy166II	GTNNAC	2 cut(s)	277, 475
Hpy188I	TCNGA	4 cut(s)	169, 225, 346, 415
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	277, 475
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	257, 335, 519
HpyF3I	CTNAG	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	9 cut(s)	17, 26, 34, 53, 106, 119, 220, 226, 444
Lsp1109I	GCAGC	2 cut(s)	394, 531
LweI	GCATC	4 cut(s)	151, 256, 277, 322
MalI	GATC	1 cut(s)	68
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	1 cut(s)	66
MflI	RGATCY	1 cut(s)	66
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	8 cut(s)	46, 52, 92, 163, 209, 409, 412, 421
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	94
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	1 cut(s)	66
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	118
NspI	RCATGY	1 cut(s)	118
PasI	CCCWGGG	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	203
PciI	ACATGT	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	409, 521
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PscI	ACATGT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	3 cut(s)	138, 278, 528
RsaNI	GTAC	3 cut(s)	137, 277, 527
SatI	GCNGC	2 cut(s)	408, 520
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	8 cut(s)	107, 220, 264, 282, 355, 438, 474, 480
SfaNI	GCATC	4 cut(s)	151, 256, 277, 322
Sse9I	AATT	1 cut(s)	375
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	304
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	2 cut(s)	76, 436
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	12, 84
TasI	AATT	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	2 cut(s)	407, 519
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	463
XceI	RCATGY	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.