Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001630

Physical Location & Seq

Genomic Coordinates Reverse (-)

4370054 .. 4372274

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTCTTGTGGGATTGGTTCTATGGGGTTCTCGCATCTCTAGGCTTGTGGCAGAAGGAGGCCAAGATCTTGTTCCTGGGTCTCGATAATGCCGGCAAAACCACCCTGCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCACCAACCGACGCAGTATCCAACATCTGAGGAGTTAAGCATTGGGAAGATCAAGTTCAAGGCTTTTGATTTGGGTGGGCATCAGATTGCTCGCAGGGTTTGGAAAGATTACTATGCCAAGGTGGATGCGGTTGTTTACCTAGTGGATTCTTATGACAAGGAAAGATTCGCGGAATCAAAAAAGGAGCTGGATGCTCTCCTTTCTGATGAGGCATTGGCCACTGTTCCATTCCTTATTCTGGGAAACAAGATCGACATACCATATGCAGCATCAGAAGAAGAGTTGCGATATCACCTTGGTCTGAACAACTTCACCACAGGCAAGGGTAAAGTTAACTTGACAGACTCAAACGTGCGCCCTCTCGAAGTATTCATGTGCAGCATTGTTCGCAAAATGGGTTATGGAGATGGATTCAAGTGGGTTTCTCAGTACATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

194

Amino Acids

22.15

Weight (kDa)

6.91

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 192	3.2e-64	ADP-ribosylation factor family
SRPRB	PF09439	19 - 146	5.3e-09	Signal recognition particle receptor beta subunit
Roc	PF08477	22 - 132	2.2e-08	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	22 - 130	4.1e-07	50S ribosome-binding GTPase
Ras	PF00071	22 - 134	1.7e-06	Ras family
G-alpha	PF00503	50 - 133	8e-09	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09180 AT1G56330
fragaria_vesca	FvH4_4g19421 FvH4_5g39351 FvH4_5g39351 FvH4_6g07290
malus_domestica	MD03G1296300.v1.1 MD04G1194800.v1.1 MD11G1315700.v1.1 MD12G1207000.v1.1 MD16G1157700.v1.1
prunus_persica	Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.6G314700_v2.0.a1 Prupe.8G271000_v2.0.a1 Prupe.8G271000_v2.0.a1
pyrus_communis	pycom03g23450 pycom04g17210 pycom11g27560 pycom13g13430 pycom16g13270
rosa_chinensis	RchiOBHm_Chr3g0456901 RchiOBHm_Chr4g0424461 RchiOBHm_Chr7g0241641
rosa_laevigata	RLG00000000558 RLG00000007472 RLG00000025269
rosa_multiflora	Rmu_sc0000133.1_g000014 Rmu_sc0003567.1_g000007 Rmu_sc0019791.1_g000003 Rmu_sc0026340.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218860 Rroxscaffold_5G00366400 Rroxscaffold_6G00422390
rosa_rugosa	Rorug03G0016900 Rorug07G0345900
rosa_samantha	Rh3AG077100 Rh3BG078900 Rh3CG078800 Rh3DG080800 Rh4BG259400 Rh4CG270700 Rh4DG253900 Rh7BG471500 Rh7CG516900
rosa_wichuraiana	Rw3G006620 Rw4G021940 Rw7G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	311
AciI	CCGC	2 cut(s)	269, 311
AcoI	YGGCCR	1 cut(s)	357
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	199, 556
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	60, 357
ApeKI	GCWGC	2 cut(s)	407, 519
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	498
AsuHPI	GGTGA	2 cut(s)	425, 445
BalI	TGGCCA	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	419, 531
BccI	CCATC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	41, 281
BfuI	GTATCC	1 cut(s)	168
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	2 cut(s)	408, 520
BlsI	GCNGC	2 cut(s)	409, 521
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	5 cut(s)	44, 229, 256, 322, 419
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	76, 258, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse118I	RCCGGY	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	76, 258, 436
BseGI	GGATG	2 cut(s)	271, 337
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	2 cut(s)	159, 581
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	419, 531
BsgI	GTGCAG	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	62, 359
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	62, 359
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	66, 189, 390
BspACI	CCGC	2 cut(s)	269, 311
BspANI	GGCC	2 cut(s)	62, 359
BspCNI	CTCAG	2 cut(s)	160, 580
BspFNI	CGCG	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	76, 258, 436
BssMI	GATC	3 cut(s)	66, 189, 390
BssT1I	CCWWGG	2 cut(s)	258, 436
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	94, 232
BstDEI	CTNAG	2 cut(s)	168, 567
BstF5I	GGATG	2 cut(s)	271, 337
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	3 cut(s)	69, 192, 393
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	66, 189, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 528
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	419, 531
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	62, 359
BtsCI	GGATG	2 cut(s)	271, 337
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	94, 232
CfoI	GCGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	92
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	2 cut(s)	115, 514
CviJI	RGCY	5 cut(s)	45, 62, 203, 328, 359
CviKI_1	RGCY	5 cut(s)	45, 62, 203, 328, 359
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	168, 567
DpnI	GATC	3 cut(s)	68, 191, 392
DpnII	GATC	3 cut(s)	66, 189, 390
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	2 cut(s)	258, 436
Eco31I	GGTCTC	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	75
EcoRV	GATATC	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	258, 436
ErhI	CCWWGG	2 cut(s)	258, 436
FaeI	CATG	2 cut(s)	118, 517
FaiI	YATR	9 cut(s)	24, 116, 255, 294, 398, 403, 405, 515, 543
FatI	CATG	2 cut(s)	114, 513
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	408, 520
FokI	GGATG	2 cut(s)	278, 344
Fsp4HI	GCNGC	2 cut(s)	408, 520
FspBI	CTAG	2 cut(s)	41, 281
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	2 cut(s)	408, 520
HaeIII	GGCC	2 cut(s)	62, 359
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	118, 517
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	5 cut(s)	287, 306, 314, 485, 552
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	425, 445
Hpy166II	GTNNAC	2 cut(s)	277, 475
Hpy188I	TCNGA	5 cut(s)	169, 225, 346, 415, 444
Hpy188III	TCNNGA	2 cut(s)	83, 503
Hpy8I	GTNNAC	2 cut(s)	277, 475
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	2 cut(s)	407, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 528
HpyF3I	CTNAG	2 cut(s)	168, 567
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	118, 517
HspAI	GCGC	1 cut(s)	496
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	66, 189, 390
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	8 cut(s)	62, 89, 106, 119, 220, 314, 365, 444
Lsp1109I	GCAGC	2 cut(s)	419, 531
LweI	GCATC	5 cut(s)	44, 229, 256, 322, 419
MaeI	CTAG	2 cut(s)	41, 281
MaeII	ACGT	1 cut(s)	492
MalI	GATC	3 cut(s)	68, 191, 392
MboI	GATC	3 cut(s)	66, 189, 390
MboII	GAAGA	3 cut(s)	199, 428, 431
MflI	RGATCY	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	359
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	52, 163, 343, 510
Mox20I	TGGCCA	1 cut(s)	359
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	2 cut(s)	176, 474
Msp20I	TGGCCA	1 cut(s)	359
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	115, 528
NaeI	GCCGGC	1 cut(s)	94
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	66, 189, 390
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	118, 517
NspI	RCATGY	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	4 cut(s)	287, 306, 314, 552
PkrI	GCNGC	2 cut(s)	409, 521
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SaqAI	TTAA	2 cut(s)	176, 474
SatI	GCNGC	2 cut(s)	408, 520
Sau3AI	GATC	3 cut(s)	66, 189, 390
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	5 cut(s)	264, 282, 330, 438, 495
SfaNI	GCATC	5 cut(s)	44, 229, 256, 322, 419
SsiI	CCGC	2 cut(s)	269, 311
SspMI	CTAG	2 cut(s)	41, 281
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	258, 436
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	3 cut(s)	84, 393, 504
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	4 cut(s)	287, 306, 314, 552
Tru1I	TTAA	2 cut(s)	176, 474
Tru9I	TTAA	2 cut(s)	176, 474
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	2 cut(s)	407, 519
TspDTI	ATGAA	1 cut(s)	502
TspRI	CASTG	1 cut(s)	367
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	41, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.