Rorug03G0016900
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001630
Physical Location & Seq
Forward (+)
1323439 .. 1323801
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0016900.1

Sequence Viewer

Length: 363 bp
ATGAAACATCCTGATAACTATATCGAAGTCAAGGACCGGTTGAAGGATGTGATTACATCTGGGGTAGAGAACATAAGCACTGTTGAGGTTGAAACAGTTTTGTTTAGCCATCCAGCAGTTCTTGAGGCTGCAATTGTTGCAAGGCCTGATAATCACTGGGGACAAACTCCTTGTGCATTTGTGAAATTGAAGGATGGCTTTGATGTGAATGTGCAAGAACTAATTGAGTTTTGCCGCGATCATATGCCTCATTACATGGCACCCCGGATAGTAATTTTCGATGTTATGCCAAAGACTTCAACAGGAAAGATGCAAAAATTCATTCTCAGAGAAAAAGCTAAGGTCTTGGGCAGCCTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

120

Amino Acids

13.61

Weight (kDa)

6.5

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding_C PF13193 29 - 103 9.7e-21 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AccII CGCG 1 cut(s) 237
AciI CCGC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 43
AgeI ACCGGT 1 cut(s) 36
AgsI TTSAA 4 cut(s) 43, 92, 190, 300
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 128, 351
ApoI RAATTY 1 cut(s) 317
AsiGI ACCGGT 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 265
AvaII GGWCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 117, 188
BcnI CCSGG 1 cut(s) 265
BisI GCNGC 3 cut(s) 129, 235, 352
BlsI GCNGC 3 cut(s) 130, 236, 353
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 265
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 4 cut(s) 7, 52, 109, 199
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 259
BshTI ACCGGT 1 cut(s) 36
BsiSI CCGG 2 cut(s) 37, 265
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 235
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 339
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 1 cut(s) 238
Bst4CI ACNGT 2 cut(s) 82, 97
BstAPI GCANNNNNTGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 326, 339
BstF5I GGATG 4 cut(s) 7, 52, 109, 199
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 263
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 4 cut(s) 7, 52, 109, 199
BtsIMutI CAGTG 2 cut(s) 78, 154
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 36
CviAII CATG 1 cut(s) 256
CviJI RGCY 6 cut(s) 108, 128, 145, 198, 338, 354
CviKI_1 RGCY 6 cut(s) 108, 128, 145, 198, 338, 354
DdeI CTNAG 2 cut(s) 326, 339
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 34
FaeI CATG 1 cut(s) 259
FaiI YATR 6 cut(s) 21, 74, 243, 245, 257, 287
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 174
FatI CATG 1 cut(s) 255
FauNDI CATATG 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 129, 235, 352
FokI GGATG 3 cut(s) 59, 96, 206
Fsp4HI GCNGC 3 cut(s) 129, 235, 352
GluI GCNGC 3 cut(s) 129, 235, 352
HaeIII GGCC 1 cut(s) 145
HapII CCGG 2 cut(s) 37, 265
Hin1II CATG 1 cut(s) 259
HpaII CCGG 2 cut(s) 37, 265
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 3 cut(s) 11, 122, 360
HpyAV CCTTC 2 cut(s) 37, 184
HpyCH4III ACNGT 2 cut(s) 82, 97
HpyCH4V TGCA 5 cut(s) 131, 140, 176, 214, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 326, 339
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 8 cut(s) 24, 45, 50, 126, 142, 159, 278, 288
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 300
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MfeI CAATTG 1 cut(s) 132
MluCI AATT 5 cut(s) 132, 185, 222, 273, 317
MnlI CCTC 3 cut(s) 79, 118, 258
MspI CCGG 2 cut(s) 37, 265
MspR9I CCNGG 1 cut(s) 265
MunI CAATTG 1 cut(s) 132
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 265
NdeI CATATG 1 cut(s) 243
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 261
PceI AGGCCT 1 cut(s) 145
PinAI ACCGGT 1 cut(s) 36
PkrI GCNGC 3 cut(s) 130, 236, 353
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 34
SatI GCNGC 3 cut(s) 129, 235, 352
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 265
SetI ASST 3 cut(s) 90, 340, 345
SfaNI GCATC 1 cut(s) 300
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 5 cut(s) 132, 185, 222, 273, 317
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 1 cut(s) 235
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 263
TaaI ACNGT 2 cut(s) 82, 97
TaqI TCGA 2 cut(s) 24, 279
TasI AATT 5 cut(s) 132, 185, 222, 273, 317
TauI GCSGC 1 cut(s) 237
TscAI CASTG 2 cut(s) 85, 161
TseI GCWGC 2 cut(s) 128, 351
TspDTI ATGAA 2 cut(s) 17, 310
TspRI CASTG 2 cut(s) 85, 161
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.