Prupe.6G314700_v2.0.a1
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001630
Physical Location & Seq
Forward (+)
28084869 .. 28087309
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G314700.1

Sequence Viewer

Length: 582 bp
ATGTTCTTGTTCGATTGGTTCTATGGGGTTCTTGCATCGCTCGGCTTGTGGCAGAAGGAGGCCAAGATCTTGTTTTTGGGTCTCGACAATGCTGGCAAAACCACGTTACTTCATATGCTTAAAGATGAGAGATTAGTTCAACACCAGCCGACGCAGTATCCGACATCAGAAGAGTTAAGCATTGGGAAAATCAAGTTCAAGGCTTTTGATTTGGGTGGACATCAGATTGCTCGCAGAGTTTGGAAAGATTACTATGCCAAGGTGGATGCAGTGGTTTACCTAGTGGATGCTTACGACAAGGAAAGATTTGCCGAGTCGAAAAAAGAGCTAGATGCTCTTCTCTCTGATGAGGGGTTGGCCAATGTTCCATTCCTTATTCTGGGAAACAAGATTGACATACCATATGCTGCCTCAGAAGAAGAATTGCGATTCCACCTCGGCCTGAACAACTTCACCACAGGCAAGGGTAAAGTAAACTTGACAGACTCAAATGTCCGTCCCCTCGAGGTTTTCATGTGCAGCATTGTTCGCAAAATGGGTTATGGTGATGGCTTCAAGTGGCTTTCTCAGTACATTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

194

Amino Acids

22.09

Weight (kDa)

6.91

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 491
AbsI CCTCGAGG 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 357
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 3 cut(s) 140, 199, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 3 cut(s) 60, 357, 439
ApeKI GCWGC 2 cut(s) 407, 519
Asp700I GAANNNNTTC 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 445, 557
AvaI CYCGRG 1 cut(s) 503
BalI TGGCCA 1 cut(s) 359
BbvI GCAGC 2 cut(s) 394, 531
BccI CCATC 1 cut(s) 542
BciVI GTATCC 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 2 cut(s) 281, 329
BfuI GTATCC 1 cut(s) 168
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 408, 520
BlsI GCNGC 2 cut(s) 409, 521
BmeT110I CYCGRG 1 cut(s) 503
BmsI GCATC 4 cut(s) 44, 256, 277, 322
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 258, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 258, 436
BseGI GGATG 2 cut(s) 271, 292
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 426, 581
BseXI GCAGC 2 cut(s) 394, 531
BsgI GTGCAG 1 cut(s) 538
BshFI GGCC 3 cut(s) 62, 359, 441
BsiHKCI CYCGRG 1 cut(s) 503
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 483
BsnI GGCC 3 cut(s) 62, 359, 441
Bso31I GGTCTC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 503
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 3 cut(s) 62, 359, 441
BspCNI CTCAG 2 cut(s) 425, 580
BspQI GCTCTTC 1 cut(s) 342
BspTNI GGTCTC 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 258, 436
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 258
Bst6I CTCTTC 2 cut(s) 165, 342
BstC8I GCNNGC 2 cut(s) 94, 232
BstDEI CTNAG 2 cut(s) 412, 567
BstF5I GGATG 2 cut(s) 271, 292
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 394, 531
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 62, 359, 441
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 271, 292
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 2 cut(s) 94, 232
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 571
CviAII CATG 1 cut(s) 514
CviJI RGCY 9 cut(s) 45, 62, 148, 203, 328, 359, 441, 552, 562
CviKI_1 RGCY 9 cut(s) 45, 62, 148, 203, 328, 359, 441, 552, 562
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 2 cut(s) 412, 567
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 2 cut(s) 165, 342
EarI CTCTTC 2 cut(s) 165, 342
Eco130I CCWWGG 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 517
FaiI YATR 9 cut(s) 24, 114, 116, 255, 398, 403, 405, 515, 543
FaqI GGGAC 1 cut(s) 483
FatI CATG 1 cut(s) 513
FauNDI CATATG 2 cut(s) 114, 403
Fnu4HI GCNGC 2 cut(s) 408, 520
FokI GGATG 2 cut(s) 278, 299
Fsp4HI GCNGC 2 cut(s) 408, 520
FspBI CTAG 2 cut(s) 281, 329
GluI GCNGC 2 cut(s) 408, 520
HaeIII GGCC 3 cut(s) 62, 359, 441
HgaI GACGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 517
HinfI GANTC 3 cut(s) 314, 429, 485
HphI GGTGA 2 cut(s) 445, 557
Hpy166II GTNNAC 3 cut(s) 218, 277, 475
Hpy188I TCNGA 5 cut(s) 162, 169, 225, 346, 415
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 3 cut(s) 218, 277, 475
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 35, 269, 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 528
HpyF3I CTNAG 2 cut(s) 412, 567
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 1 cut(s) 517
Kzo9I GATC 1 cut(s) 66
LguI GCTCTTC 1 cut(s) 342
LpnPI CCDG 5 cut(s) 78, 158, 365, 444, 455
Lsp1109I GCAGC 2 cut(s) 394, 531
LweI GCATC 4 cut(s) 44, 256, 277, 322
MaeI CTAG 2 cut(s) 281, 329
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 4 cut(s) 182, 329, 428, 431
MflI RGATCY 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 1 cut(s) 422
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 2 cut(s) 323, 479
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 6 cut(s) 52, 343, 421, 446, 499, 512
Mox20I TGGCCA 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 449
MscI TGGCCA 1 cut(s) 359
MseI TTAA 3 cut(s) 120, 176, 576
Msp20I TGGCCA 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 528
NdeI CATATG 2 cut(s) 114, 403
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 517
NmeAIII GCCGAG 3 cut(s) 21, 337, 417
PaeR7I CTCGAG 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 1 cut(s) 429
PkrI GCNGC 2 cut(s) 409, 521
PleI GAGTC 2 cut(s) 322, 479
PpsI GAGTC 2 cut(s) 322, 479
PspXI VCTCGAGB 1 cut(s) 503
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 3 cut(s) 120, 176, 576
SatI GCNGC 2 cut(s) 408, 520
Sau3AI GATC 1 cut(s) 66
SchI GAGTC 2 cut(s) 323, 479
SetI ASST 6 cut(s) 107, 264, 282, 330, 438, 510
SfaNI GCATC 4 cut(s) 44, 256, 277, 322
Sfr274I CTCGAG 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 1 cut(s) 422
SspMI CTAG 2 cut(s) 281, 329
StyI CCWWGG 1 cut(s) 258
TaiI ACGT 1 cut(s) 107
TaqI TCGA 4 cut(s) 12, 84, 317, 504
TasI AATT 1 cut(s) 422
TatI WGTACW 1 cut(s) 570
TfiI GAWTC 1 cut(s) 429
Tru1I TTAA 3 cut(s) 120, 176, 576
Tru9I TTAA 3 cut(s) 120, 176, 576
TscAI CASTG 1 cut(s) 276
TseI GCWGC 2 cut(s) 407, 519
TspDTI ATGAA 2 cut(s) 101, 502
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 1 cut(s) 276
XhoI CTCGAG 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 2 cut(s) 281, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.