Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001630

Physical Location & Seq

Genomic Coordinates Reverse (-)

21086501 .. 21088554

Gene Structure 2054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTCTTGTTCGATTGGTTCTACGGAATCTTAGCTTCGTTAGGGTTATGGCAAAAAGAAGCAAAGATCTTGTTTCTCGGTCTCGATAATGCTGGCAAAACTACATTACTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAGCATTGGAAAAATCAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGTTTGGAAAGATTACTATGCCAAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAAAGAAAGATTTGCAGAGTCAAAAAGAGAGCTTGATGCTCTTCTCTCGGATGAAGCCCTTGCAACTGTCCCGTTTCTGATTCTTGGGAACAAGATTGATATCCCTTATGCAGCTTCTGAAGACGAACTGAGGTATCACTTGGGTCTCACTAACTTCACCACCGGTAAGGGCAAAGTGACGCTCGGAGACTCTGGTGTTCGCCCACTTGAGGTCTTCATGTGCAGCATTGTCCGTAAAATGGGTTATGGCGAGGGATTCAAATGGCTCTCTCAGTACATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0017076 GO:0019001 GO:0019898 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

193

Amino Acids

21.99

Weight (kDa)

6.52

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 192	3e-65	ADP-ribosylation factor family
SRPRB	PF09439	19 - 144	3.6e-08	Signal recognition particle receptor beta subunit
Roc	PF08477	22 - 132	3e-08	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	22 - 130	1.3e-07	50S ribosome-binding GTPase
Ras	PF00071	22 - 134	2.1e-06	Ras family
G-alpha	PF00503	48 - 133	6.1e-09	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09180 AT1G56330
fragaria_vesca	FvH4_4g19421 FvH4_5g39351 FvH4_5g39351 FvH4_6g07290
malus_domestica	MD03G1296300.v1.1 MD04G1194800.v1.1 MD11G1315700.v1.1 MD12G1207000.v1.1 MD16G1157700.v1.1
prunus_persica	Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.1G122600_v2.0.a1 Prupe.6G314700_v2.0.a1 Prupe.8G271000_v2.0.a1 Prupe.8G271000_v2.0.a1
pyrus_communis	pycom03g23450 pycom04g17210 pycom11g27560 pycom13g13430 pycom16g13270
rosa_chinensis	RchiOBHm_Chr3g0456901 RchiOBHm_Chr4g0424461 RchiOBHm_Chr7g0241641
rosa_laevigata	RLG00000000558 RLG00000007472 RLG00000025269
rosa_multiflora	Rmu_sc0000133.1_g000014 Rmu_sc0003567.1_g000007 Rmu_sc0019791.1_g000003 Rmu_sc0026340.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218860 Rroxscaffold_5G00366400 Rroxscaffold_6G00422390
rosa_rugosa	Rorug03G0016900 Rorug07G0345900
rosa_samantha	Rh3AG077100 Rh3BG078900 Rh3CG078800 Rh3DG080800 Rh4BG259400 Rh4CG270700 Rh4DG253900 Rh7BG471500 Rh7CG516900
rosa_wichuraiana	Rw3G006620 Rw4G021940 Rw7G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	276
AcuI	CTGAAG	2 cut(s)	189, 435
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	2 cut(s)	505, 535
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	199, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	3 cut(s)	35, 328, 410
AluI	AGCT	3 cut(s)	35, 328, 410
Alw26I	GTCTC	3 cut(s)	86, 446, 477
AlwNI	CAGNNNCTG	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	407, 519
AsiGI	ACCGGT	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	445
BaeI	ACNNNNGTAYC	2 cut(s)	413, 446
BbsI	GAAGAC	2 cut(s)	423, 502
BbvI	GCAGC	2 cut(s)	419, 531
BcoDI	GTCTC	3 cut(s)	86, 446, 477
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	2 cut(s)	408, 520
BlsI	GCNGC	2 cut(s)	409, 521
BmsI	GCATC	4 cut(s)	151, 256, 277, 322
BpiI	GAAGAC	2 cut(s)	423, 502
BpuEI	CTTGAG	1 cut(s)	524
BsaBI	GATNNNNATC	1 cut(s)	395
BsaI	GGTCTC	2 cut(s)	86, 446
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 535
Bse118I	RCCGGY	1 cut(s)	458
Bse8I	GATNNNNATC	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	157, 292, 352
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	505, 535
BseMII	CTCAG	2 cut(s)	416, 581
BseXI	GCAGC	2 cut(s)	419, 531
BsgI	GTGCAG	1 cut(s)	538
BshTI	ACCGGT	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	505, 535
BsmAI	GTCTC	3 cut(s)	86, 446, 477
BsmFI	GGGAC	1 cut(s)	350
Bso31I	GGTCTC	2 cut(s)	86, 446
Bsp143I	GATC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	417, 580
BspQI	GCTCTTC	1 cut(s)	342
BspTNI	GGTCTC	2 cut(s)	86, 446
BsrFI	RCCGGY	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	4 cut(s)	31, 176, 425, 567
BstF5I	GGATG	3 cut(s)	157, 292, 352
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	3 cut(s)	86, 446, 477
BstMBI	GATC	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	419, 531
BstV2I	GAAGAC	2 cut(s)	423, 502
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	157, 292, 352
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	458
CseI	GACGC	2 cut(s)	160, 484
Csp6I	GTAC	1 cut(s)	571
CspAI	ACCGGT	1 cut(s)	458
CviAII	CATG	2 cut(s)	115, 514
CviJI	RGCY	7 cut(s)	35, 148, 203, 328, 353, 410, 562
CviKI_1	RGCY	7 cut(s)	35, 148, 203, 328, 353, 410, 562
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	4 cut(s)	31, 176, 425, 567
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	2 cut(s)	86, 446
Eco32I	GATATC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	189, 435
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	118, 517
FaiI	YATR	7 cut(s)	49, 116, 255, 294, 405, 515, 543
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	114, 513
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	408, 520
FokI	GGATG	3 cut(s)	144, 299, 359
Fsp4HI	GCNGC	2 cut(s)	408, 520
GluI	GCNGC	2 cut(s)	408, 520
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	2 cut(s)	160, 484
Hin1II	CATG	2 cut(s)	118, 517
HinfI	GANTC	5 cut(s)	27, 314, 376, 485, 552
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	6 cut(s)	169, 225, 346, 375, 415, 482
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	311, 359, 407, 519
HpyF3I	CTNAG	4 cut(s)	31, 176, 425, 567
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	118, 517
Kzo9I	GATC	1 cut(s)	66
LguI	GCTCTTC	1 cut(s)	342
LpnPI	CCDG	3 cut(s)	78, 472, 474
Lsp1109I	GCAGC	2 cut(s)	419, 531
LweI	GCATC	4 cut(s)	151, 256, 277, 322
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	4 cut(s)	182, 329, 428, 502
MflI	RGATCY	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	323, 479
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	420, 499, 541
MspI	CCGG	1 cut(s)	459
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	2 cut(s)	118, 517
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	27, 376, 552
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	409, 521
PleI	GAGTC	2 cut(s)	322, 479
PpsI	GAGTC	2 cut(s)	322, 479
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	342
SatI	GCNGC	2 cut(s)	408, 520
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	323, 479
SetI	ASST	8 cut(s)	37, 167, 264, 282, 330, 412, 431, 510
SfaNI	GCATC	4 cut(s)	151, 256, 277, 322
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	12, 84
TaqII	GACCGA	1 cut(s)	68
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	3 cut(s)	27, 376, 552
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	2 cut(s)	407, 519
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	2 cut(s)	363, 502
TspGWI	ACGGA	2 cut(s)	39, 518
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.