Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0014751

Physical Location & Seq

Genomic Coordinates Forward (+)

7056225 .. 7058821

Gene Structure 2597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG051500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGAGTGACAAGTACACTCTGAGCTACAAGACCATCATCAACACTCTCCGTAGTTCCAAAGGGAAGCTGATTATAATCTCGAACAATTGCCCTTCTCTGAGAAAGTCGAAGATCGAGTACTATGCGATGTTTGCCAAGGTTGGAGTTCACCACCACAATGGAACAAATGTGAACTACGGCTACGGCACGCCCTTGGCGAATGTTGATTGGCTACATGGTGGGGCTGAGTCACTTCTCACTCTAACAAACATATTCATTGTGTTAGGAACAGGGTTGGTCAACTCTTGCTTCAGCTATGAGCAACCTCACTCCGGCTTTAACATTCATGCTTGCCATCATCTTCAGGGGCTTTCACAGCATTATTTGCAGATGCAGTTGTATTCACGGTTGTATTGGCGATCATGTCTTCGCTTTCTGATTTTCTTTGGCCTCATTGTAGTTGGAGGTGCCAACATGATTGAGAAGGCATGGCATGGTGATCTGGTCTTTCACAAGCATGTCTTGATCCCTTTAAGTCTCTGTGTTTTCGCTTTTATCCGCTTGCTCGACAAATATCGTAGATTGAGAAGGATGAGGAAAAAGATGAGAAGGATGAATGAGAAGATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

204

Amino Acids

23.67

Weight (kDa)

9.93

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	1 - 57	3.6e-08	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
DUF3593	PF12159	59 - 91	2e-11	Protein of unknown function (DUF3593)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35310 FvH4_5g35310 FvH4_5g35310 FvH4_5g35310
rosa_chinensis	RchiOBHm_Chr1g0324141 RchiOBHm_Chr7g0241651
rosa_laevigata	RLG00000000557
rosa_multiflora	Rmu_sc0003823.1_g000014 Rmu_sc0005017.1_g000011 Rmu_sc0006803.1_g000012
rosa_roxburghii	Rroxscaffold_3G00218850
rosa_rugosa	Rorug07G0345900 Rorug07G0345900
rosa_samantha	Rh1BG051500 Rh7AG500400 Rh7BG471600
rosa_wichuraiana	Rw7G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	449
AciI	CCGC	1 cut(s)	541
AclWI	GGATC	1 cut(s)	502
AcuI	CTGAAG	2 cut(s)	277, 329
AfaI	GTAC	2 cut(s)	17, 122
AfiI	CCNNNNNNNGG	1 cut(s)	314
AluBI	AGCT	3 cut(s)	27, 70, 297
AluI	AGCT	3 cut(s)	27, 70, 297
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	502
AoxI	GGCC	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	143, 491
BanI	GGYRCC	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbsI	GAAGAC	1 cut(s)	401
BccI	CCATC	3 cut(s)	44, 345, 601
BceAI	ACGGC	2 cut(s)	196, 202
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BcoDI	GTCTC	1 cut(s)	524
BmcAI	AGTACT	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	451
BmsI	GCATC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	138, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	138, 195
BseGI	GGATG	2 cut(s)	579, 600
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	3 cut(s)	14, 92, 219
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	114, 401, 481, 507
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	3 cut(s)	15, 93, 220
BspLI	GGNNCC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	138, 195
BssMI	GATC	4 cut(s)	114, 401, 481, 507
BssT1I	CCWWGG	2 cut(s)	138, 195
Bst4CI	ACNGT	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	191, 334, 545
BstDEI	CTNAG	3 cut(s)	23, 101, 228
BstF5I	GGATG	2 cut(s)	579, 600
BstKTI	GATC	4 cut(s)	117, 404, 484, 510
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	4 cut(s)	114, 401, 481, 507
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 358, 367
BstNSI	RCATGY	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	401
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	432
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	579, 600
Cac8I	GCNNGC	3 cut(s)	191, 334, 545
Csp6I	GTAC	2 cut(s)	16, 121
CviAII	CATG	7 cut(s)	218, 329, 405, 457, 471, 476, 500
CviJI	RGCY	9 cut(s)	27, 70, 183, 214, 227, 297, 318, 352, 432
CviKI_1	RGCY	9 cut(s)	27, 70, 183, 214, 227, 297, 318, 352, 432
CviQI	GTAC	2 cut(s)	16, 121
DdeI	CTNAG	3 cut(s)	23, 101, 228
DpnI	GATC	4 cut(s)	116, 403, 483, 509
DpnII	GATC	4 cut(s)	114, 401, 481, 507
Eco130I	CCWWGG	2 cut(s)	138, 195
Eco57I	CTGAAG	2 cut(s)	277, 329
EcoT14I	CCWWGG	2 cut(s)	138, 195
ErhI	CCWWGG	2 cut(s)	138, 195
FaeI	CATG	7 cut(s)	221, 332, 408, 460, 474, 479, 503
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FatI	CATG	7 cut(s)	217, 328, 404, 456, 470, 475, 499
FokI	GGATG	2 cut(s)	586, 607
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	7 cut(s)	221, 332, 408, 460, 474, 479, 503
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	143, 491
Hpy166II	GTNNAC	4 cut(s)	18, 151, 175, 283
Hpy188I	TCNGA	3 cut(s)	24, 102, 420
Hpy188III	TCNNGA	2 cut(s)	82, 505
Hpy8I	GTNNAC	4 cut(s)	18, 151, 175, 283
HpyAV	CCTTC	4 cut(s)	105, 460, 564, 585
HpyCH4III	ACNGT	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	370, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 358, 367
HpyF3I	CTNAG	3 cut(s)	23, 101, 228
Hsp92II	CATG	7 cut(s)	221, 332, 408, 460, 474, 479, 503
Kzo9I	GATC	4 cut(s)	114, 401, 481, 507
LpnPI	CCDG	4 cut(s)	258, 328, 332, 470
LweI	GCATC	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	8, 231
MalI	GATC	4 cut(s)	116, 403, 483, 509
MboI	GATC	4 cut(s)	114, 401, 481, 507
MboII	GAAGA	4 cut(s)	16, 124, 335, 401
MfeI	CAATTG	1 cut(s)	88
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	124, 424
MnlI	CCTC	4 cut(s)	318, 440, 443, 570
MseI	TTAA	2 cut(s)	321, 515
MslI	CAYNNNNRTG	2 cut(s)	159, 498
MspI	CCGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	134, 358, 367
NdeII	GATC	4 cut(s)	114, 401, 481, 507
NlaIII	CATG	7 cut(s)	221, 332, 408, 460, 474, 479, 503
NlaIV	GGNNCC	1 cut(s)	451
NmuCI	GTSAC	2 cut(s)	8, 231
NspI	RCATGY	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	451
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
RsaI	GTAC	2 cut(s)	17, 122
RsaNI	GTAC	2 cut(s)	16, 121
RseI	CAYNNNNRTG	2 cut(s)	159, 498
SaqAI	TTAA	2 cut(s)	321, 515
Sau3AI	GATC	4 cut(s)	114, 401, 481, 507
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	1 cut(s)	239
SetI	ASST	6 cut(s)	29, 72, 144, 299, 310, 451
SfaNI	GCATC	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	159, 498
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	541
StyI	CCWWGG	2 cut(s)	138, 195
TaaI	ACNGT	1 cut(s)	390
TaqI	TCGA	4 cut(s)	83, 110, 117, 549
TasI	AATT	1 cut(s)	88
TatI	WGTACW	2 cut(s)	15, 120
Tru1I	TTAA	2 cut(s)	321, 515
Tru9I	TTAA	2 cut(s)	321, 515
TseFI	GTSAC	2 cut(s)	8, 231
Tsp45I	GTSAC	2 cut(s)	8, 231
TspDTI	ATGAA	4 cut(s)	17, 247, 317, 611
TspGWI	ACGGA	1 cut(s)	41
XceI	RCATGY	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.