RchiOBHm_Chr1g0337331

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
28987079 .. 28989880
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56524

Sequence Viewer

Length: 318 bp
ATGGACAAATTTTTCTCTATGGAAGAGTTTCGATTTCAATTGTTGGCTGTTGAGAGAGATTTTGAGAAAATAATGGTGCTTCAAACTCAAAATACCATGTCTTCCAATGCTGGCACTTATAGTACCAATTCCTCCCGAAGTGTGAAATATGGAATGTCAAGTACTGGAATGCCATCTCATGCAATCTTGTCATCTCAATATACTGGTCTATCAACTCCTTTGAAGGAGCAGTCAGCAAATGTGCAACTGTGCAGGTTCCATCTCCCTCAGCCCCAGTCCAAGCATCTGCAATTATTATGGAAAAAGATACCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.98

Weight (kDa)

9.46

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 2 cut(s) 124, 163
AgsI TTSAA 3 cut(s) 38, 83, 223
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 27
BaeI ACNNNNGTAYC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 93
BbvCI CCTCAGC 1 cut(s) 267
BccI CCATC 2 cut(s) 181, 267
BfuAI ACCTGC 1 cut(s) 243
BmcAI AGTACT 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 267
Bse1I ACTGG 3 cut(s) 169, 208, 274
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 3 cut(s) 169, 208, 274
BsgI GTGCAG 1 cut(s) 271
BsmI GAATGC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 257
BspMI ACCTGC 1 cut(s) 243
BsrI ACTGG 3 cut(s) 169, 208, 274
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 93
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 123, 162
CviAII CATG 2 cut(s) 97, 179
CviJI RGCY 2 cut(s) 47, 271
CviKI_1 RGCY 2 cut(s) 47, 271
CviQI GTAC 2 cut(s) 123, 162
DdeI CTNAG 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
FaeI CATG 2 cut(s) 100, 182
FaiI YATR 7 cut(s) 20, 98, 120, 150, 180, 201, 298
FatI CATG 2 cut(s) 96, 178
Hin1II CATG 2 cut(s) 100, 182
Hpy188III TCNNGA 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 4 cut(s) 182, 244, 252, 289
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 2 cut(s) 100, 182
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 96, 150, 189, 238, 287
LweI GCATC 1 cut(s) 292
MaeII ACGT 1 cut(s) 314
MboII GAAGA 2 cut(s) 35, 93
MfeI CAATTG 1 cut(s) 38
MluCI AATT 4 cut(s) 8, 38, 127, 290
MnlI CCTC 2 cut(s) 142, 276
MroXI GAANNNNTTC 1 cut(s) 27
MunI CAATTG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 174
NlaIII CATG 2 cut(s) 100, 182
NlaIV GGNNCC 1 cut(s) 257
PctI GAATGC 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 257
RsaI GTAC 2 cut(s) 124, 163
RsaNI GTAC 2 cut(s) 123, 162
ScaI AGTACT 1 cut(s) 163
SetI ASST 2 cut(s) 257, 317
SfaNI GCATC 1 cut(s) 292
Sse9I AATT 4 cut(s) 8, 38, 127, 290
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 31
TasI AATT 4 cut(s) 8, 38, 127, 290
TatI WGTACW 1 cut(s) 161
XapI RAATTY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.