Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007479.1

Orthogroup ID

OG0018150

Physical Location & Seq

Genomic Coordinates Reverse (-)

20313 .. 21083

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007479.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggttccattcaccccagatattggtattccacagtctgcacctaattctagatatttgttgagcaacagtgttggaaatgaaaatttcacactaattcatagtggggcttctcttcgctctggaaaccttgcatctaatcatcccaagtctattaactcctttgaagaagcagtcaacaatggttcaactgtgcagaagactgaaaatgaagagaagagagagaagaaagatgaaactgcggacccaagtactgaaggtgtcactttgaactcatttaagaagcttttgagtagccaaaatgccttcacaaatctttctggaactgggttttccacttccaccatttcttttgagcttatttgcaaggatcggtctgcattgaggactagcttaggttcactttttgagtcaaaaaatgctctgccttctggtcttggtctatctaataatggaagttcttcactctttgccacaacagggccttcaattgtgtctaggagtgacaccccttcaattgtgtctaaagaacaagaatttcgaagattgtctacaaggcatcaacccaccaagcagctcatgtctactcctttaaataaaactacactgtattgtaggcaggcctctcattcagtgaagctatatccatctctgccacttattcctcctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0022613 GO:0030163 GO:0031267 GO:0031323 GO:0031326 GO:0031503 GO:0031935 GO:0031938 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051603 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060255 GO:0060968 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05166 map05166

Pfam Domains

Protein Families

NUP50 Ran_BP1

Protein Analysis

224

Amino Acids

24.2

Weight (kDa)

9.12

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018150)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337331 RchiOBHm_Chr5g0055681
rosa_multiflora	Rmu_co8012122.1_g000001 Rmu_sc0001782.1_g000051 Rmu_sc0006656.1_g000002 Rmu_sc0007310.1_g000007 Rmu_sc0007479.1_g000005 Rmu_sc0009401.1_g000001 Rmu_sc0035419.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290660
rosa_samantha	Rh2AG367000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccI	GTMKAC	2 cut(s)	551, 584
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	85, 536
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	23, 480
AgsI	TTSAA	5 cut(s)	167, 189, 271, 489, 516
AluBI	AGCT	5 cut(s)	286, 358, 393, 577, 640
AluI	AGCT	5 cut(s)	286, 358, 393, 577, 640
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	2 cut(s)	482, 621
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	2 cut(s)	85, 536
Asp700I	GAANNNNTTC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	244, 482
AsuHPI	GGTGA	1 cut(s)	4
AsuII	TTCGAA	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	535, 567
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	1 cut(s)	655
BfaI	CTAG	3 cut(s)	51, 390, 498
BisI	GCNGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	576
BmcAI	AGTACT	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	244, 482
BmiI	GGNNCC	2 cut(s)	6, 246
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	143, 568
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	394
Bpu14I	TTCGAA	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 480
Bse1I	ACTGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	23, 480
BseNI	ACTGG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	586
BsgI	GTGCAG	2 cut(s)	24, 215
BshFI	GGCC	2 cut(s)	484, 623
BslI	CCNNNNNNNGG	2 cut(s)	23, 480
BsnI	GGCC	2 cut(s)	484, 623
Bsp119I	TTCGAA	1 cut(s)	541
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	484, 623
BspLI	GGNNCC	2 cut(s)	6, 246
BspPI	GGATC	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	1 cut(s)	370
Bst4CI	ACNGT	4 cut(s)	36, 71, 193, 609
Bst6I	CTCTTC	3 cut(s)	120, 207, 212
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	586
BstV2I	GAAGAC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	484, 623
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	76, 605, 639
Cac8I	GCNNGC	1 cut(s)	621
Cfr13I	GGNCC	2 cut(s)	244, 482
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	580
CviJI	RGCY	9 cut(s)	110, 286, 297, 358, 393, 484, 577, 623, 640
CviKI_1	RGCY	9 cut(s)	110, 286, 297, 358, 393, 484, 577, 623, 640
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
DraI	TTTAAA	1 cut(s)	594
Eam1104I	CTCTTC	3 cut(s)	120, 207, 212
EarI	CTCTTC	3 cut(s)	120, 207, 212
Eco147I	AGGCCT	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	482
FaeI	CATG	1 cut(s)	583
FaiI	YATR	3 cut(s)	102, 581, 643
FatI	CATG	1 cut(s)	579
FblI	GTMKAC	2 cut(s)	551, 584
Fnu4HI	GCNGC	1 cut(s)	575
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	575
FspBI	CTAG	3 cut(s)	51, 390, 498
GluI	GCNGC	1 cut(s)	575
HaeIII	GGCC	2 cut(s)	484, 623
Hin1II	CATG	1 cut(s)	583
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	1 cut(s)	410
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	4 cut(s)	178, 401, 552, 585
Hpy188III	TCNNGA	4 cut(s)	51, 123, 321, 668
Hpy8I	GTNNAC	4 cut(s)	178, 401, 552, 585
HpyAV	CCTTC	5 cut(s)	251, 316, 438, 495, 522
HpyCH4III	ACNGT	4 cut(s)	36, 71, 193, 609
HpyCH4V	TGCA	5 cut(s)	41, 134, 196, 366, 380
HpyF3I	CTNAG	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	583
Kzo9I	GATC	1 cut(s)	370
LpnPI	CCDG	7 cut(s)	30, 108, 306, 312, 417, 465, 605
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	2 cut(s)	143, 568
MaeI	CTAG	3 cut(s)	51, 390, 498
MaeIII	GTNAC	2 cut(s)	262, 503
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	8 cut(s)	107, 179, 211, 224, 229, 238, 453, 555
MfeI	CAATTG	2 cut(s)	489, 516
MluCI	AATT	6 cut(s)	46, 85, 96, 489, 516, 536
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	3 cut(s)	378, 634, 675
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	3 cut(s)	156, 279, 593
MunI	CAATTG	2 cut(s)	489, 516
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	2 cut(s)	6, 246
NmuCI	GTSAC	2 cut(s)	262, 503
NspV	TTCGAA	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	460
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	576
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	6, 246
PspPI	GGNCC	2 cut(s)	244, 482
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	156, 279, 593
SatI	GCNGC	1 cut(s)	575
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	2 cut(s)	244, 482
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	1 cut(s)	419
SetI	ASST	9 cut(s)	46, 132, 262, 288, 360, 395, 400, 579, 642
SfaNI	GCATC	2 cut(s)	143, 568
SfuI	TTCGAA	1 cut(s)	541
SinI	GGWCC	1 cut(s)	244
Sse9I	AATT	6 cut(s)	46, 85, 96, 489, 516, 536
SseBI	AGGCCT	1 cut(s)	623
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	3 cut(s)	51, 390, 498
StuI	AGGCCT	1 cut(s)	623
TaaI	ACNGT	4 cut(s)	36, 71, 193, 609
TaqI	TCGA	1 cut(s)	541
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	6 cut(s)	46, 85, 96, 489, 516, 536
TatI	WGTACW	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	156, 279, 593
Tru9I	TTAA	3 cut(s)	156, 279, 593
TscAI	CASTG	3 cut(s)	76, 612, 639
TseFI	GTSAC	2 cut(s)	262, 503
TseI	GCWGC	1 cut(s)	574
Tsp45I	GTSAC	2 cut(s)	262, 503
TspDTI	ATGAA	4 cut(s)	89, 96, 225, 249
TspRI	CASTG	3 cut(s)	76, 612, 639
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	2 cut(s)	85, 536
XbaI	TCTAGA	1 cut(s)	50
XmiI	GTMKAC	2 cut(s)	551, 584
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	3 cut(s)	51, 390, 498
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.