Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035419.1

Orthogroup ID

OG0018150

Physical Location & Seq

Genomic Coordinates Reverse (-)

690 .. 1523

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035419.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgtcttcctatgctgacatttacagtaacaattccactcgaagtgtgaaatatggaatgtcaagtcctggaatgccatctcatgcaatcttgtcatctcagtatactggtaattgttctatggcacttgctttagataatgctgcatcaaatgctggtttcttgcctaatgttaccaataatagtgtgctatctggtatacctgcatacaattatttcaacatatcatcttctggttccaatattgtccatcattattatgcaccatcacctgtttccagtttagttcttaatgtgcctattgctgctttaaactatcaagcaatggttccattcaccccaaatattggtattccacagtctgcaccgaattctagatatttgttgagcaacagtgttggaaatgaaaatttcacactaattcacattggggcttctcttagctctagaaaccttgcatctgatcatcccaggtctataaactcctttgaagaagcaatcaacaatggttcaattgtgcaggttccatcttcctcagccacagtccaagcatctacaagtatcatggaaaaagatactaacgagactgtaactgatggtgagaccggaaatgttgagaagactgaaaatgaagagaacagagataagaaagatgaaactgcagacccaagtactgaaggtgtcactttgaactcatttcagaagctttcgagtagtcaaaatgccttcacaaatctttttggaactaggttttccacttccaccatttcttttgggcttattttcaaggatgggtctgcattgaggacaagctcaggctcactttttgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0022613 GO:0030163 GO:0031267 GO:0031323 GO:0031326 GO:0031503 GO:0031935 GO:0031938 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051603 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060255 GO:0060968 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05166 map05166

Pfam Domains

Protein Families

NUP50 Ran_BP1

Protein Analysis

277

Amino Acids

29.46

Weight (kDa)

5.08

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018150)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337331 RchiOBHm_Chr5g0055681
rosa_multiflora	Rmu_co8012122.1_g000001 Rmu_sc0001782.1_g000051 Rmu_sc0006656.1_g000002 Rmu_sc0007310.1_g000007 Rmu_sc0007479.1_g000005 Rmu_sc0009401.1_g000001 Rmu_sc0035419.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290660
rosa_samantha	Rh2AG367000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	211, 511
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccI	GTMKAC	2 cut(s)	104, 199
AcsI	RAATTY	2 cut(s)	370, 409
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	5 cut(s)	220, 491, 513, 691, 787
AjnI	CCWGG	2 cut(s)	67, 470
AluBI	AGCT	3 cut(s)	444, 706, 813
AluI	AGCT	3 cut(s)	444, 706, 813
Alw26I	GTCTC	2 cut(s)	578, 596
ApeKI	GCWGC	2 cut(s)	143, 305
ApoI	RAATTY	2 cut(s)	370, 409
AsuHPI	GGTGA	3 cut(s)	261, 328, 611
BbsI	GAAGAC	1 cut(s)	626
BbvCI	CCTCAGC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	130, 292
BccI	CCATC	6 cut(s)	85, 258, 274, 535, 590, 785
BciT130I	CCWGG	2 cut(s)	69, 472
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	578, 596
BfaI	CTAG	3 cut(s)	375, 447, 747
BfmI	CTRYAG	1 cut(s)	660
BfuAI	ACCTGC	2 cut(s)	211, 511
BisI	GCNGC	2 cut(s)	144, 306
BlsI	GCNGC	2 cut(s)	145, 307
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	69, 472
BmiI	GGNNCC	3 cut(s)	238, 330, 525
BmrFI	CCNGG	2 cut(s)	69, 472
BmsI	GCATC	3 cut(s)	155, 467, 560
BpiI	GAAGAC	1 cut(s)	626
Bpu10I	CCTNAGC	2 cut(s)	535, 814
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	112, 279
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	69, 472
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	2 cut(s)	466, 796
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	3 cut(s)	113, 549, 828
BseNI	ACTGG	2 cut(s)	112, 279
BseXI	GCAGC	2 cut(s)	130, 292
BsgI	GTGCAG	2 cut(s)	348, 539
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	2 cut(s)	578, 596
BsmI	GAATGC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	596
Bsp143I	GATC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	112, 548, 827
BspLI	GGNNCC	3 cut(s)	238, 330, 525
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	2 cut(s)	211, 511
BspTNI	GGTCTC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	112, 279
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	1 cut(s)	463
BssNAI	GTATAC	2 cut(s)	105, 200
Bst1107I	GTATAC	2 cut(s)	105, 200
Bst2UI	CCWGG	2 cut(s)	69, 472
Bst4CI	ACNGT	5 cut(s)	26, 360, 395, 544, 589
Bst6I	CTCTTC	1 cut(s)	627
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstDEI	CTNAG	4 cut(s)	99, 440, 535, 814
BstF5I	GGATG	2 cut(s)	466, 796
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	2 cut(s)	578, 596
BstMBI	GATC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	69, 472
BstSCI	CCNGG	2 cut(s)	67, 470
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	2 cut(s)	130, 292
BstV2I	GAAGAC	1 cut(s)	626
BstZ17I	GTATAC	2 cut(s)	105, 200
BtsCI	GGATG	2 cut(s)	466, 796
BtsIMutI	CAGTG	1 cut(s)	400
BveI	ACCTGC	2 cut(s)	211, 511
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	2 cut(s)	83, 565
CviJI	RGCY	7 cut(s)	434, 444, 539, 706, 778, 813, 819
CviKI_1	RGCY	7 cut(s)	434, 444, 539, 706, 778, 813, 819
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	4 cut(s)	99, 440, 535, 814
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
DraI	TTTAAA	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	67, 470
FaeI	CATG	2 cut(s)	86, 568
FatI	CATG	2 cut(s)	82, 564
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	2 cut(s)	104, 199
Fnu4HI	GCNGC	2 cut(s)	144, 306
FokI	GGATG	2 cut(s)	453, 803
Fsp4HI	GCNGC	2 cut(s)	144, 306
FspBI	CTAG	3 cut(s)	375, 447, 747
GluI	GCNGC	2 cut(s)	144, 306
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	2 cut(s)	86, 568
HindIII	AAGCTT	1 cut(s)	704
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	3 cut(s)	261, 328, 611
Hpy166II	GTNNAC	2 cut(s)	105, 200
Hpy188I	TCNGA	2 cut(s)	463, 702
Hpy188III	TCNNGA	2 cut(s)	375, 447
Hpy8I	GTNNAC	2 cut(s)	105, 200
HpyAV	CCTTC	2 cut(s)	671, 736
HpyCH4III	ACNGT	5 cut(s)	26, 360, 395, 544, 589
HpyCH4V	TGCA	9 cut(s)	86, 146, 206, 263, 365, 458, 520, 662, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	4 cut(s)	99, 440, 535, 814
Hsp92II	CATG	2 cut(s)	86, 568
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	463
Lsp1109I	GCAGC	2 cut(s)	130, 292
LweI	GCATC	3 cut(s)	155, 467, 560
MaeI	CTAG	3 cut(s)	375, 447, 747
MaeIII	GTNAC	4 cut(s)	26, 172, 589, 682
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	5 cut(s)	222, 503, 522, 631, 644
MfeI	CAATTG	1 cut(s)	513
MluCI	AATT	7 cut(s)	31, 112, 211, 370, 409, 420, 513
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	2 cut(s)	544, 798
MseI	TTAA	2 cut(s)	291, 311
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	69, 472
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	2 cut(s)	69, 472
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	2 cut(s)	86, 568
NlaIV	GGNNCC	3 cut(s)	238, 330, 525
NmuCI	GTSAC	1 cut(s)	682
PctI	GAATGC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	145, 307
Psp6I	CCWGG	2 cut(s)	67, 470
PspGI	CCWGG	2 cut(s)	67, 470
PspN4I	GGNNCC	3 cut(s)	238, 330, 525
PstI	CTGCAG	1 cut(s)	664
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	291, 311
SatI	GCNGC	2 cut(s)	144, 306
Sau3AI	GATC	1 cut(s)	463
ScaI	AGTACT	1 cut(s)	673
ScrFI	CCNGG	2 cut(s)	69, 472
SfaNI	GCATC	3 cut(s)	155, 467, 560
SfcI	CTRYAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	7 cut(s)	31, 112, 211, 370, 409, 420, 513
SspI	AATATT	2 cut(s)	244, 346
SspMI	CTAG	3 cut(s)	375, 447, 747
StyD4I	CCNGG	2 cut(s)	67, 470
TaaI	ACNGT	5 cut(s)	26, 360, 395, 544, 589
TaqI	TCGA	2 cut(s)	40, 710
TasI	AATT	7 cut(s)	31, 112, 211, 370, 409, 420, 513
TatI	WGTACW	1 cut(s)	671
Tru1I	TTAA	2 cut(s)	291, 311
Tru9I	TTAA	2 cut(s)	291, 311
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	2 cut(s)	143, 305
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	3 cut(s)	420, 645, 669
TspRI	CASTG	1 cut(s)	400
Van91I	CCANNNNNTGG	1 cut(s)	347
XapI	RAATTY	2 cut(s)	370, 409
XbaI	TCTAGA	2 cut(s)	374, 446
XmiI	GTMKAC	2 cut(s)	104, 199
XspI	CTAG	3 cut(s)	375, 447, 747
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.