Rmu_sc0006656.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006656.1
OG0018150
Physical Location & Seq
Reverse (-)
12521 .. 13825
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006656.1_g000002.1.cds

Sequence Viewer

Length: 339 bp
atgttagtatgtgatcagaattttcacagtggggcttctcttaacatgttagttccatctccctcagccccagtccaagcatctgcaattattaaggaaaaagataccaacgtgactgtaactgatggtgagaccgaaaacattgagaagactgaaaatgaaaagagagagaagaaagatgaaactgcggacctaattactcaaggtgtcactgatgttgagaatactgaaaatggagagaagagagagaagaaagatgaaactgtaaacccaagtactgaagggccttcaactgtgtctaggagtgacacccctttaaatgtgtctaaagaacaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.23

Weight (kDa)

4.52

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 125
AoxI GGCC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 190, 284
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 190
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BbsI GAAGAC 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 64, 119
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 300
BmcAI AGTACT 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 190, 284
BmrI ACTGGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 71
BshFI GGCC 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 71
BssMI GATC 1 cut(s) 13
Bst4CI ACNGT 4 cut(s) 29, 118, 265, 295
Bst6I CTCTTC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 64
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 34, 210
Cfr13I GGNCC 2 cut(s) 190, 284
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 46
CviJI RGCY 3 cut(s) 35, 68, 286
CviKI_1 RGCY 3 cut(s) 35, 68, 286
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 64
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
DraI TTTAAA 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 284
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 10, 47
FatI CATG 1 cut(s) 45
FbaI TGATCA 1 cut(s) 13
FspBI CTAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 286
Hin1II CATG 1 cut(s) 49
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 275, 297
HpyCH4III ACNGT 4 cut(s) 29, 118, 265, 295
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 1 cut(s) 84
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 4 cut(s) 112, 118, 208, 305
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 4 cut(s) 160, 184, 253, 262
MluCI AATT 3 cut(s) 19, 87, 195
MnlI CCTC 1 cut(s) 73
MseI TTAA 3 cut(s) 42, 93, 317
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 49
NmuCI GTSAC 3 cut(s) 112, 208, 305
NspI RCATGY 1 cut(s) 49
PciI ACATGT 1 cut(s) 45
PscI ACATGT 1 cut(s) 45
PspPI GGNCC 2 cut(s) 190, 284
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 42, 93, 317
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 2 cut(s) 190, 284
ScaI AGTACT 1 cut(s) 277
SetI ASST 3 cut(s) 114, 195, 208
SfaNI GCATC 1 cut(s) 89
SgeI CNNG 7 cut(s) 58, 83, 89, 124, 215, 285, 312
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 3 cut(s) 19, 87, 195
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 300
TaaI ACNGT 4 cut(s) 29, 118, 265, 295
TaiI ACGT 1 cut(s) 114
TaqII GACCGA 1 cut(s) 149
TasI AATT 3 cut(s) 19, 87, 195
TatI WGTACW 1 cut(s) 275
Tru1I TTAA 3 cut(s) 42, 93, 317
Tru9I TTAA 3 cut(s) 42, 93, 317
TscAI CASTG 2 cut(s) 34, 217
TseFI GTSAC 3 cut(s) 112, 208, 305
Tsp45I GTSAC 3 cut(s) 112, 208, 305
TspDTI ATGAA 3 cut(s) 174, 195, 273
TspRI CASTG 2 cut(s) 34, 217
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 49
XspI CTAG 1 cut(s) 300
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.