Rmu_sc0007310.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007310.1
OG0018150
Physical Location & Seq
Forward (+)
24798 .. 28214
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007310.1_g000007.1.cds

Sequence Viewer

Length: 528 bp
atgttggtggtatcggctggggtaggtcttcttcttgcgttcaaggaatatcacaagtggaggatgcatagtctttctaaaacacaatcactgaagtttgtgattgctgaattgctctatgcagctacatgcctacatcctaatattttcacctctctcaagttcatcgtcatctctgaaggtgctaataagttcatcatcatctctaatggcacatacctggtcaaagtggccaagctagttccatctccctcagccccagtccaagcatctgcaattattaaggaaaaagataccaacgtgactgtaactgatggtgagaccgaaaacattgagaagactgaaaatgaaaagagagagaagaaagatgaaactgcggacctaattactcaaggtgtcactgatgttgagaatactgaaaatggagagaagagagagaagaaagatgaaactgtaaacccaagtactgaagggccttcaactgtgtctaggagtgacacccctttaaatgtgtctaaagaacaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.28

Weight (kDa)

5.71

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 377
AcoI YGGCCR 1 cut(s) 231
AcuI CTGAAG 3 cut(s) 113, 198, 489
AfaI GTAC 1 cut(s) 466
AgsI TTSAA 2 cut(s) 43, 480
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 2 cut(s) 125, 238
AluI AGCT 2 cut(s) 125, 238
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 2 cut(s) 231, 473
ApeKI GCWGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 379, 473
AsuHPI GGTGA 2 cut(s) 142, 329
AvaII GGWCC 1 cut(s) 379
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BalI TGGCCA 1 cut(s) 233
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbsI GAAGAC 2 cut(s) 20, 344
BbvCI CCTCAGC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 253, 308
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 2 cut(s) 239, 489
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 379, 473
BmrFI CCNGG 1 cut(s) 221
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 2 cut(s) 54, 278
BmuI ACTGGG 1 cut(s) 254
BpiI GAAGAC 2 cut(s) 20, 344
Bpu10I CCTNAGC 1 cut(s) 253
BpuEI CTTGAG 2 cut(s) 143, 375
BsaI GGTCTC 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 221
BseGI GGATG 2 cut(s) 69, 136
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 134
BseYI CCCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 233, 475
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 2 cut(s) 233, 475
Bso31I GGTCTC 1 cut(s) 314
BspACI CCGC 1 cut(s) 377
BspANI GGCC 2 cut(s) 233, 475
BspCNI CTCAG 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 3 cut(s) 307, 454, 484
Bst6I CTCTTC 1 cut(s) 425
BstDEI CTNAG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 69, 136
BstMAI GTCTC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 2 cut(s) 20, 344
BsuRI GGCC 2 cut(s) 233, 475
BtsCI GGATG 2 cut(s) 69, 136
BtsIMutI CAGTG 2 cut(s) 89, 399
Cfr13I GGNCC 2 cut(s) 379, 473
CsiI ACCWGGT 1 cut(s) 219
Csp6I GTAC 1 cut(s) 465
CviAII CATG 1 cut(s) 129
CviJI RGCY 6 cut(s) 17, 125, 233, 238, 257, 475
CviKI_1 RGCY 6 cut(s) 17, 125, 233, 238, 257, 475
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 1 cut(s) 253
DraI TTTAAA 1 cut(s) 507
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 3 cut(s) 113, 198, 489
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 69
FaeI CATG 1 cut(s) 132
FaiI YATR 4 cut(s) 69, 120, 130, 217
FatI CATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 76, 123
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 2 cut(s) 239, 489
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 233, 475
Hin1II CATG 1 cut(s) 132
HphI GGTGA 2 cut(s) 142, 329
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 457
HpyAV CCTTC 3 cut(s) 173, 464, 486
HpyCH4III ACNGT 3 cut(s) 307, 454, 484
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 67, 122, 275
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 1 cut(s) 132
LpnPI CCDG 4 cut(s) 3, 206, 233, 273
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 2 cut(s) 54, 278
MabI ACCWGGT 1 cut(s) 219
MaeI CTAG 2 cut(s) 239, 489
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 4 cut(s) 301, 307, 397, 494
MboII GAAGA 6 cut(s) 20, 23, 349, 373, 442, 451
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 3 cut(s) 110, 276, 384
MluNI TGGCCA 1 cut(s) 233
MnlI CCTC 3 cut(s) 54, 163, 262
Mox20I TGGCCA 1 cut(s) 233
Mph1103I ATGCAT 1 cut(s) 69
MscI TGGCCA 1 cut(s) 233
MseI TTAA 2 cut(s) 282, 506
Msp20I TGGCCA 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
NlaIII CATG 1 cut(s) 132
NmuCI GTSAC 3 cut(s) 301, 397, 494
NsiI ATGCAT 1 cut(s) 69
NspI RCATGY 1 cut(s) 132
PkrI GCNGC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 2 cut(s) 379, 473
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SaqAI TTAA 2 cut(s) 282, 506
SatI GCNGC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 379, 473
ScaI AGTACT 1 cut(s) 466
ScrFI CCNGG 1 cut(s) 221
SetI ASST 9 cut(s) 28, 127, 155, 184, 222, 240, 303, 384, 397
SexAI ACCWGGT 1 cut(s) 219
SfaNI GCATC 2 cut(s) 54, 278
SinI GGWCC 1 cut(s) 379
SmlI CTYRAG 2 cut(s) 158, 390
SmoI CTYRAG 2 cut(s) 158, 390
Sse9I AATT 3 cut(s) 110, 276, 384
SsiI CCGC 1 cut(s) 377
SspI AATATT 1 cut(s) 145
SspMI CTAG 2 cut(s) 239, 489
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 3 cut(s) 307, 454, 484
TaiI ACGT 1 cut(s) 303
TaqII GACCGA 1 cut(s) 338
TasI AATT 3 cut(s) 110, 276, 384
TatI WGTACW 1 cut(s) 464
Tru1I TTAA 2 cut(s) 282, 506
Tru9I TTAA 2 cut(s) 282, 506
TscAI CASTG 2 cut(s) 96, 406
TseFI GTSAC 3 cut(s) 301, 397, 494
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 3 cut(s) 301, 397, 494
TspDTI ATGAA 5 cut(s) 154, 184, 363, 384, 462
TspRI CASTG 2 cut(s) 96, 406
VpaK11BI GGWCC 1 cut(s) 379
XceI RCATGY 1 cut(s) 132
XspI CTAG 2 cut(s) 239, 489
ZrmI AGTACT 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.