NUP50 (Nucleoporin 50 kDa)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0337331 RchiOBHm_Chr5g0055681 |
| rosa_multiflora | Rmu_co8012122.1_g000001 Rmu_sc0001782.1_g000051 Rmu_sc0006656.1_g000002 Rmu_sc0007310.1_g000007 Rmu_sc0007479.1_g000005 Rmu_sc0009401.1_g000001 Rmu_sc0035419.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00290660 |
| rosa_samantha | Rh2AG367000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 25 |
| AclWI | GGATC | 1 cut(s) | 309 |
| AcsI | RAATTY | 1 cut(s) | 440 |
| AfaI | GTAC | 1 cut(s) | 187 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 188 |
| AgsI | TTSAA | 5 cut(s) | 5, 27, 202, 212, 420 |
| AluBI | AGCT | 3 cut(s) | 217, 289, 324 |
| AluI | AGCT | 3 cut(s) | 217, 289, 324 |
| Alw26I | GTCTC | 2 cut(s) | 92, 110 |
| AlwI | GGATC | 1 cut(s) | 309 |
| AoxI | GGCC | 1 cut(s) | 412 |
| ApoI | RAATTY | 1 cut(s) | 440 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 391 |
| AspS9I | GGNCC | 1 cut(s) | 413 |
| BbsI | GAAGAC | 1 cut(s) | 140 |
| BbvCI | CCTCAGC | 1 cut(s) | 49 |
| BccI | CCATC | 1 cut(s) | 49 |
| BcoDI | GTCTC | 2 cut(s) | 92, 110 |
| BfaI | CTAG | 1 cut(s) | 321 |
| BfmI | CTRYAG | 1 cut(s) | 174 |
| BfuAI | ACCTGC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 413 |
| BmiI | GGNNCC | 1 cut(s) | 39 |
| BmrI | ACTGGG | 1 cut(s) | 267 |
| BmuI | ACTGGG | 1 cut(s) | 267 |
| BpiI | GAAGAC | 1 cut(s) | 140 |
| Bpu10I | CCTNAGC | 2 cut(s) | 49, 325 |
| BsaI | GGTCTC | 1 cut(s) | 110 |
| BsaWI | WCCGGW | 1 cut(s) | 119 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 188 |
| Bse1I | ACTGG | 1 cut(s) | 262 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BseMII | CTCAG | 2 cut(s) | 63, 339 |
| BseNI | ACTGG | 1 cut(s) | 262 |
| BsgI | GTGCAG | 1 cut(s) | 53 |
| BshFI | GGCC | 1 cut(s) | 414 |
| BsiSI | CCGG | 1 cut(s) | 120 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BsmAI | GTCTC | 2 cut(s) | 92, 110 |
| BsnI | GGCC | 1 cut(s) | 414 |
| Bso31I | GGTCTC | 1 cut(s) | 110 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspANI | GGCC | 1 cut(s) | 414 |
| BspCNI | CTCAG | 2 cut(s) | 62, 338 |
| BspLI | GGNNCC | 1 cut(s) | 39 |
| BspMAI | CTGCAG | 1 cut(s) | 178 |
| BspMI | ACCTGC | 1 cut(s) | 25 |
| BspPI | GGATC | 1 cut(s) | 309 |
| BspTNI | GGTCTC | 1 cut(s) | 110 |
| BsrI | ACTGG | 1 cut(s) | 262 |
| BssMI | GATC | 1 cut(s) | 301 |
| Bst4CI | ACNGT | 3 cut(s) | 20, 58, 103 |
| Bst6I | CTCTTC | 1 cut(s) | 146 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 412 |
| BstDEI | CTNAG | 2 cut(s) | 49, 325 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMAI | GTCTC | 2 cut(s) | 92, 110 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstSFI | CTRYAG | 1 cut(s) | 174 |
| BstV2I | GAAGAC | 1 cut(s) | 140 |
| BsuRI | GGCC | 1 cut(s) | 414 |
| BtsIMutI | CAGTG | 1 cut(s) | 25 |
| BveI | ACCTGC | 1 cut(s) | 25 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 412 |
| Cfr13I | GGNCC | 1 cut(s) | 413 |
| Csp6I | GTAC | 1 cut(s) | 186 |
| CviJI | RGCY | 6 cut(s) | 53, 217, 228, 289, 324, 414 |
| CviKI_1 | RGCY | 6 cut(s) | 53, 217, 228, 289, 324, 414 |
| CviQI | GTAC | 1 cut(s) | 186 |
| DdeI | CTNAG | 2 cut(s) | 49, 325 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 1 cut(s) | 146 |
| EarI | CTCTTC | 1 cut(s) | 146 |
| Eco31I | GGTCTC | 1 cut(s) | 110 |
| EcoO109I | RGGNCCY | 1 cut(s) | 413 |
| FaiI | YATR | 1 cut(s) | 80 |
| FspBI | CTAG | 1 cut(s) | 321 |
| HaeIII | GGCC | 1 cut(s) | 414 |
| HapII | CCGG | 1 cut(s) | 120 |
| HindIII | AAGCTT | 1 cut(s) | 215 |
| HinfI | GANTC | 1 cut(s) | 341 |
| HpaII | CCGG | 1 cut(s) | 120 |
| Hpy166II | GTNNAC | 1 cut(s) | 332 |
| Hpy188III | TCNNGA | 1 cut(s) | 252 |
| Hpy8I | GTNNAC | 1 cut(s) | 332 |
| HpyAV | CCTTC | 3 cut(s) | 247, 369, 426 |
| HpyCH4III | ACNGT | 3 cut(s) | 20, 58, 103 |
| HpyCH4V | TGCA | 5 cut(s) | 34, 71, 176, 297, 311 |
| HpyF3I | CTNAG | 2 cut(s) | 49, 325 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LmnI | GCTCC | 1 cut(s) | 8 |
| LpnPI | CCDG | 8 cut(s) | 20, 133, 174, 237, 243, 312, 348, 396 |
| MaeI | CTAG | 1 cut(s) | 321 |
| MaeIII | GTNAC | 1 cut(s) | 103 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 4 cut(s) | 145, 163, 172, 384 |
| MfeI | CAATTG | 2 cut(s) | 27, 420 |
| MluCI | AATT | 3 cut(s) | 27, 420, 440 |
| MlyI | GAGTC | 1 cut(s) | 350 |
| MnlI | CCTC | 2 cut(s) | 58, 309 |
| MroXI | GAANNNNTTC | 1 cut(s) | 391 |
| MspI | CCGG | 1 cut(s) | 120 |
| MunI | CAATTG | 2 cut(s) | 27, 420 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIV | GGNNCC | 1 cut(s) | 39 |
| PdmI | GAANNNNTTC | 1 cut(s) | 391 |
| PleI | GAGTC | 1 cut(s) | 349 |
| PpsI | GAGTC | 1 cut(s) | 349 |
| PspN4I | GGNNCC | 1 cut(s) | 39 |
| PspPI | GGNCC | 1 cut(s) | 413 |
| PstI | CTGCAG | 1 cut(s) | 178 |
| RsaI | GTAC | 1 cut(s) | 187 |
| RsaNI | GTAC | 1 cut(s) | 186 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| Sau96I | GGNCC | 1 cut(s) | 413 |
| SchI | GAGTC | 1 cut(s) | 350 |
| SetI | ASST | 6 cut(s) | 39, 193, 219, 291, 326, 331 |
| SfcI | CTRYAG | 1 cut(s) | 174 |
| Sse9I | AATT | 3 cut(s) | 27, 420, 440 |
| SspI | AATATT | 1 cut(s) | 127 |
| SspMI | CTAG | 1 cut(s) | 321 |
| TaaI | ACNGT | 3 cut(s) | 20, 58, 103 |
| TaqI | TCGA | 1 cut(s) | 221 |
| TaqII | GACCGA | 1 cut(s) | 294 |
| TasI | AATT | 3 cut(s) | 27, 420, 440 |
| TatI | WGTACW | 1 cut(s) | 185 |
| TscAI | CASTG | 1 cut(s) | 25 |
| TspDTI | ATGAA | 1 cut(s) | 183 |
| TspRI | CASTG | 1 cut(s) | 25 |
| XapI | RAATTY | 1 cut(s) | 440 |
| XmnI | GAANNNNTTC | 1 cut(s) | 391 |
| XspI | CTAG | 1 cut(s) | 321 |