Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001782.1

Orthogroup ID

OG0018150

Physical Location & Seq

Genomic Coordinates Reverse (-)

247501 .. 248658

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001782.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atggacaaattcttctctatggaagagtttcaatctgaattgttggctattgagagagattttgaagaaacattggtgcttcaaactcaagataccatgtcttccaatgctagcacttatagtaacaattcatctcgaattgtgaaatatggaatttcaagtactggaataccatctcatgcaattttgtcatctcagtatactggtaattgttctatggcacctactttacataatgatgcatcaaatgatggtttcttgcctaatgttaccaatactagtgtgttatctggtatacctgcttataatcatttcaatacattatcttctggttccaatgttcatcattattatgcatcatcacctgtttccactacacattttgggatgctgcagaacaacatgatatccatttcaattcttaatgtgcctactgctgccccaaactatcaacaaattgttccattcaccccaaatattggtattccagagtctgcacctaattctggaaacttgttgagcaacgaagttggaaatgaaaagttcacactatttcacaatggggcttctcttagctctgacaaccttgcatctgatcatcccaggtctatcaacttcattgaaggagcaggcaacagtggttcaattgtgccgattccatctgcttcagccacagtcgaagcacttgcaagtattatggaaaaagatactgatgagactgtaactaatggggagactgaaaatattgagaagaccgaaaataacgagaagagagagaagaaagatgaaattgcagacccaagtataggtgtcactttgaactcatttcagaagcttttgagtagccaaaatgccttcacaaatctttctggaactgggttttccacttccaccattttttttgggcttatttccaaggatgggtctgcattggggagtagctcaggttcactttttcagtcaaaaaatgctctaccttctagtcttggtctatctaataatggaagttcttcactcttggcctcagcaggcccttcaattgtgtctaaagaacaagaatttcgaagattgtctaaaaagcataaacccatcaagcagctcatgtctacaccttcaaataaaactacctgtattgtaggaaggcctctcatccagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000056 GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006403 GO:0006405 GO:0006508 GO:0006511 GO:0006606 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017016 GO:0017038 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0022402 GO:0022613 GO:0030163 GO:0031267 GO:0031323 GO:0031326 GO:0031503 GO:0031935 GO:0031938 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0042254 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051128 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051603 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0060255 GO:0060968 GO:0065007 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902275 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05166 map05166

Pfam Domains

Protein Families

NUP50 Ran_BP1

Protein Analysis

385

Amino Acids

41.07

Weight (kDa)

5.38

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018150)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337331 RchiOBHm_Chr5g0055681
rosa_multiflora	Rmu_co8012122.1_g000001 Rmu_sc0001782.1_g000051 Rmu_sc0006656.1_g000002 Rmu_sc0007310.1_g000007 Rmu_sc0007479.1_g000005 Rmu_sc0009401.1_g000001 Rmu_sc0035419.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290660
rosa_samantha	Rh2AG367000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccI	GTMKAC	3 cut(s)	200, 295, 1106
AcsI	RAATTY	3 cut(s)	8, 153, 1058
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	4 cut(s)	479, 506, 806, 921
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	602
AluBI	AGCT	4 cut(s)	576, 835, 942, 1099
AluI	AGCT	4 cut(s)	576, 835, 942, 1099
Alw26I	GTCTC	2 cut(s)	710, 728
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	3 cut(s)	1020, 1030, 1142
ApeKI	GCWGC	3 cut(s)	391, 437, 1096
ApoI	RAATTY	3 cut(s)	8, 153, 1058
Asp700I	GAANNNNTTC	2 cut(s)	27, 1009
AspS9I	GGNCC	1 cut(s)	1031
AsuHPI	GGTGA	2 cut(s)	354, 460
AsuII	TTCGAA	1 cut(s)	1063
AsuNHI	GCTAGC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	220
BbsI	GAAGAC	2 cut(s)	93, 758
BbvCI	CCTCAGC	1 cut(s)	1024
BbvI	GCAGC	3 cut(s)	378, 424, 1108
BccI	CCATC	5 cut(s)	181, 245, 667, 914, 1097
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	1 cut(s)	604
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	710, 728
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	3 cut(s)	111, 279, 981
BfmI	CTRYAG	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	3 cut(s)	392, 438, 1097
BlsI	GCNGC	3 cut(s)	393, 439, 1098
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	1031
BmiI	GGNNCC	2 cut(s)	222, 334
BmrFI	CCNGG	1 cut(s)	604
BmrI	ACTGGG	1 cut(s)	885
BmsI	GCATC	5 cut(s)	229, 251, 365, 378, 599
BmtI	GCTAGC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	885
BpiI	GAAGAC	2 cut(s)	93, 758
Bpu10I	CCTNAGC	2 cut(s)	943, 1024
Bpu14I	TTCGAA	1 cut(s)	1063
BpuEI	CTTGAG	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	602, 915
Bsc4I	CCNNNNNNNGG	4 cut(s)	479, 506, 806, 921
Bse1I	ACTGG	4 cut(s)	169, 208, 880, 1153
BseBI	CCWGG	1 cut(s)	604
BseDI	CCNNGG	2 cut(s)	602, 915
BseGI	GGATG	4 cut(s)	393, 598, 925, 1149
BseLI	CCNNNNNNNGG	4 cut(s)	479, 506, 806, 921
BseMII	CTCAG	3 cut(s)	209, 957, 1038
BseNI	ACTGG	4 cut(s)	169, 208, 880, 1153
BseXI	GCAGC	3 cut(s)	378, 424, 1108
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	1022, 1032, 1144
BshNI	GGYRCC	1 cut(s)	220
BslI	CCNNNNNNNGG	4 cut(s)	479, 506, 806, 921
BsmAI	GTCTC	2 cut(s)	710, 728
BsnI	GGCC	3 cut(s)	1022, 1032, 1144
Bsp119I	TTCGAA	1 cut(s)	1063
Bsp143I	GATC	1 cut(s)	595
BspANI	GGCC	3 cut(s)	1022, 1032, 1144
BspCNI	CTCAG	3 cut(s)	208, 956, 1037
BspLI	GGNNCC	2 cut(s)	222, 334
BspMAI	CTGCAG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	1063
BspT107I	GGYRCC	1 cut(s)	220
BsrI	ACTGG	4 cut(s)	169, 208, 880, 1153
BssECI	CCNNGG	2 cut(s)	602, 915
BssMI	GATC	1 cut(s)	595
BssNAI	GTATAC	2 cut(s)	201, 296
BssT1I	CCWWGG	1 cut(s)	915
Bst1107I	GTATAC	2 cut(s)	201, 296
Bst2UI	CCWGG	1 cut(s)	604
Bst4CI	ACNGT	3 cut(s)	638, 676, 721
Bst6I	CTCTTC	2 cut(s)	18, 764
BstBI	TTCGAA	1 cut(s)	1063
BstC8I	GCNNGC	3 cut(s)	112, 631, 1030
BstDEI	CTNAG	4 cut(s)	195, 572, 943, 1024
BstF5I	GGATG	4 cut(s)	393, 598, 925, 1149
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	2 cut(s)	710, 728
BstMBI	GATC	1 cut(s)	595
BstNI	CCWGG	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	602
BstSFI	CTRYAG	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	378, 424, 1108
BstV2I	GAAGAC	2 cut(s)	93, 758
BstZ17I	GTATAC	2 cut(s)	201, 296
BsuRI	GGCC	3 cut(s)	1022, 1032, 1144
BtsCI	GGATG	4 cut(s)	393, 598, 925, 1149
BtsIMutI	CAGTG	1 cut(s)	643
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	3 cut(s)	112, 631, 1030
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	1031
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	4 cut(s)	97, 179, 403, 1102
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	4 cut(s)	195, 572, 943, 1024
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
Eam1104I	CTCTTC	2 cut(s)	18, 764
EarI	CTCTTC	2 cut(s)	18, 764
Eco130I	CCWWGG	1 cut(s)	915
Eco147I	AGGCCT	1 cut(s)	1144
Eco32I	GATATC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	651
EcoO109I	RGGNCCY	1 cut(s)	1031
EcoRII	CCWGG	1 cut(s)	602
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	915
EcoT22I	ATGCAT	2 cut(s)	244, 358
ErhI	CCWWGG	1 cut(s)	915
FaeI	CATG	4 cut(s)	100, 182, 406, 1105
FatI	CATG	4 cut(s)	96, 178, 402, 1101
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	3 cut(s)	200, 295, 1106
Fnu4HI	GCNGC	3 cut(s)	392, 438, 1097
FokI	GGATG	4 cut(s)	400, 585, 932, 1136
Fsp4HI	GCNGC	3 cut(s)	392, 438, 1097
FspBI	CTAG	3 cut(s)	111, 279, 981
GluI	GCNGC	3 cut(s)	392, 438, 1097
HaeIII	GGCC	3 cut(s)	1022, 1032, 1144
Hin1II	CATG	4 cut(s)	100, 182, 406, 1105
HindIII	AAGCTT	1 cut(s)	833
HinfI	GANTC	2 cut(s)	491, 655
HphI	GGTGA	2 cut(s)	354, 460
Hpy166II	GTNNAC	5 cut(s)	201, 296, 546, 950, 1107
Hpy188I	TCNGA	4 cut(s)	37, 580, 595, 831
Hpy188III	TCNNGA	5 cut(s)	89, 135, 488, 507, 870
Hpy8I	GTNNAC	5 cut(s)	201, 296, 546, 950, 1107
HpyAV	CCTTC	6 cut(s)	617, 865, 987, 1044, 1122, 1134
HpyCH4III	ACNGT	3 cut(s)	638, 676, 721
HpyCH4V	TGCA	9 cut(s)	182, 242, 356, 394, 497, 590, 689, 794, 929
HpyF3I	CTNAG	4 cut(s)	195, 572, 943, 1024
Hsp92II	CATG	4 cut(s)	100, 182, 406, 1105
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	626
Lsp1109I	GCAGC	3 cut(s)	378, 424, 1108
LweI	GCATC	5 cut(s)	229, 251, 365, 378, 599
MaeI	CTAG	3 cut(s)	111, 279, 981
MaeIII	GTNAC	4 cut(s)	122, 268, 721, 811
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MfeI	CAATTG	2 cut(s)	645, 1038
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	2 cut(s)	1033, 1155
Mph1103I	ATGCAT	2 cut(s)	244, 358
MroXI	GAANNNNTTC	2 cut(s)	27, 1009
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	2 cut(s)	237, 351
MspR9I	CCNGG	1 cut(s)	604
MunI	CAATTG	2 cut(s)	645, 1038
MvaI	CCWGG	1 cut(s)	604
NdeII	GATC	1 cut(s)	595
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	100, 182, 406, 1105
NlaIV	GGNNCC	2 cut(s)	222, 334
NmuCI	GTSAC	1 cut(s)	811
NsiI	ATGCAT	2 cut(s)	244, 358
NspV	TTCGAA	1 cut(s)	1063
PceI	AGGCCT	1 cut(s)	1144
PdmI	GAANNNNTTC	2 cut(s)	27, 1009
PfeI	GAWTC	1 cut(s)	655
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	393, 439, 1098
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PsiI	TTATAA	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	602
PspN4I	GGNNCC	2 cut(s)	222, 334
PspPI	GGNCC	1 cut(s)	1031
PsrI	GAACNNNNNNTAC	2 cut(s)	931, 963
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	2 cut(s)	237, 351
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	3 cut(s)	392, 438, 1097
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	1 cut(s)	1031
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	604
SfaNI	GCATC	5 cut(s)	229, 251, 365, 378, 599
SfcI	CTRYAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	1063
SmiMI	CAYNNNNRTG	2 cut(s)	237, 351
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SpeI	ACTAGT	1 cut(s)	278
SseBI	AGGCCT	1 cut(s)	1144
SspI	AATATT	2 cut(s)	478, 745
SspMI	CTAG	3 cut(s)	111, 279, 981
StuI	AGGCCT	1 cut(s)	1144
StyD4I	CCNGG	1 cut(s)	602
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	3 cut(s)	638, 676, 721
TaqI	TCGA	3 cut(s)	136, 678, 1063
TaqII	GACCGA	1 cut(s)	770
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	655
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	3 cut(s)	391, 437, 1096
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	5 cut(s)	120, 332, 552, 607, 801
TspRI	CASTG	1 cut(s)	643
Van91I	CCANNNNNTGG	1 cut(s)	479
XapI	RAATTY	3 cut(s)	8, 153, 1058
XmiI	GTMKAC	3 cut(s)	200, 295, 1106
XmnI	GAANNNNTTC	2 cut(s)	27, 1009
XspI	CTAG	3 cut(s)	111, 279, 981
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	2 cut(s)	244, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.