RchiOBHm_Chr1g0357131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016974
Physical Location & Seq
Forward (+)
49554451 .. 49555205
755 bp
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UTR
Exon/CDS
Intron
PRQ58243

Sequence Viewer

Length: 213 bp
ATGCCCAAGAAGCACCGCGCCATCGCCGGTGTCGGCATCATCATCACCGCCGCCGTCACTCTTTTTCCGGATCTGAAAACCAAGCCTTTGAGTAGTACCAAATCTCTGAGTCGGTGCTCTGCAAGCAATTCCGAATTTCAAAGGTTTTTGAGGTTGGTAAACTTTCAGAGGCTGAAGCGCGAAGCTTGGAAGAGCTTCGGGATTAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.87

Weight (kDa)

11.44

Isoelectric Point (pI)

20.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 18, 180
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 3 cut(s) 16, 48, 51
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 2 cut(s) 185, 195
AluI AGCT 2 cut(s) 185, 195
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 172
Aor13HI TCCGGA 1 cut(s) 67
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 194
AspLEI GCGC 2 cut(s) 20, 180
AsuHPI GGTGA 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 38
BfaI CTAG 1 cut(s) 211
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmsI GCATC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 26
BseAI TCCGGA 1 cut(s) 67
BseMII CTCAG 1 cut(s) 98
Bsh1236I CGCG 2 cut(s) 18, 180
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 27, 68
Bsp1286I GDGCHC 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 67
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 3 cut(s) 16, 48, 51
BspCNI CTCAG 1 cut(s) 99
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 2 cut(s) 18, 180
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 107
BstFNI CGCG 2 cut(s) 18, 180
BstHHI GCGC 2 cut(s) 20, 180
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 10, 123
BstUI CGCG 2 cut(s) 18, 180
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 172
CfoI GCGC 2 cut(s) 20, 180
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 1 cut(s) 96
CviJI RGCY 4 cut(s) 85, 172, 185, 195
CviKI_1 RGCY 4 cut(s) 85, 172, 185, 195
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 211
GlaI GCGC 2 cut(s) 19, 179
GluI GCNGC 1 cut(s) 51
HapII CCGG 2 cut(s) 27, 68
HhaI GCGC 2 cut(s) 20, 180
Hin6I GCGC 2 cut(s) 18, 178
HinP1I GCGC 2 cut(s) 18, 178
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 27, 68
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 4 cut(s) 75, 108, 133, 168
Hpy188III TCNNGA 2 cut(s) 68, 199
Hpy8I GTNNAC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 123
HpyF3I CTNAG 1 cut(s) 107
HspAI GCGC 2 cut(s) 18, 178
Kpn2I TCCGGA 1 cut(s) 67
Kzo9I GATC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 185
LpnPI CCDG 2 cut(s) 40, 81
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 202
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 2 cut(s) 127, 134
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 2 cut(s) 144, 162
MroI TCCGGA 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 1 cut(s) 204
MspI CCGG 2 cut(s) 27, 68
MvnI CGCG 2 cut(s) 18, 180
MwoI GCNNNNNNNGC 2 cut(s) 10, 123
NdeII GATC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 1 cut(s) 119
SetI ASST 4 cut(s) 146, 155, 187, 197
SfaNI GCATC 1 cut(s) 45
SgeI CNNG 8 cut(s) 19, 29, 39, 80, 94, 135, 191, 198
SgrAI CRCCGGYG 1 cut(s) 26
Sse9I AATT 2 cut(s) 127, 134
SsiI CCGC 3 cut(s) 16, 48, 51
SspMI CTAG 1 cut(s) 211
TasI AATT 2 cut(s) 127, 134
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
XapI RAATTY 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.