Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016974

Physical Location & Seq

Genomic Coordinates Reverse (-)

48862529 .. 48865452

Gene Structure 2924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTGGTCGTGGAATCACCGGGATGGGCGACGGAGTTGACTATAATGCCCAAGAAACACTGCGTCATTGCCGGCATCGGCATCATCATCACCATCACCGCCTCCGTCACTCTTTCTCCGGATCTGAAATCCAAGCCTCCGAGTAGTACCGAATCACCGAATCGTTTCTTTTTGAAGCTGCAACTAGTAATTGTGTTGAGCTTGCAACCGACCGTCATGGCTGTTGTGTGCTTCAAAAATGTCTTAGTCATTCGATGGTTTAATTGTTCAAGAGAATTCGATTGCATTTTAATCCTTGAGAGTGAAATTTCAGATTGCATTTTCAACAATGTTGCTATGGATGAGCGGTTTAAGGAGGAAAGTGAATATTGTCATGGTGGCAGTGATGGATTGCATGGCTATGTTCCTTCACTTGACCATGTTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

143

Amino Acids

15.83

Weight (kDa)

5.27

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323741 RchiOBHm_Chr1g0357131
rosa_laevigata	RLG00000003248
rosa_multiflora	Rmu_sc0001334.1_g000030
rosa_roxburghii	Rroxscaffold_4G00320240 Rroxscaffold_4G00320250 Rroxscaffold_4G00327940
rosa_rugosa	Rorug01G0169700 Rorug05G0363000 Rorug06G0062100
rosa_samantha	Rh2BG348400 Rh4CG074100 Rh4CG229200 Rh7CG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	2 cut(s)	99, 346
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	275, 306
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	4 cut(s)	175, 235, 270, 325
AhlI	ACTAGT	1 cut(s)	184
AluBI	AGCT	2 cut(s)	178, 201
AluI	AGCT	2 cut(s)	178, 201
AlwI	GGATC	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	2 cut(s)	275, 306
Asp700I	GAANNNNTTC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	4 cut(s)	9, 82, 88, 147
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	4 cut(s)	18, 101, 249, 380
BcnI	CCSGG	1 cut(s)	21
BcuI	ACTAGT	1 cut(s)	184
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	84, 90
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse118I	RCCGGY	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	118
BseGI	GGATG	2 cut(s)	29, 346
BseMI	GCAATG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	20, 72, 119
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	99, 346
BspEI	TCCGGA	1 cut(s)	118
BspPI	GGATC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	73, 203
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	29, 346
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMCI	CGRYCG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	29, 346
BtsI	GCAGTG	2 cut(s)	58, 388
BtsIMutI	CAGTG	2 cut(s)	58, 388
Cac8I	GCNNGC	2 cut(s)	73, 203
Cfr10I	RCCGGY	1 cut(s)	71
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	4 cut(s)	217, 374, 395, 419
CviJI	RGCY	5 cut(s)	136, 178, 201, 221, 399
CviKI_1	RGCY	5 cut(s)	136, 178, 201, 221, 399
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	275
FaeI	CATG	4 cut(s)	220, 377, 398, 422
FaiI	YATR	7 cut(s)	44, 218, 338, 375, 396, 402, 420
FatI	CATG	4 cut(s)	216, 373, 394, 418
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	36, 353
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	179
HapII	CCGG	3 cut(s)	20, 72, 119
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	220, 377, 398, 422
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	14, 152, 160
HpaII	CCGG	3 cut(s)	20, 72, 119
HphI	GGTGA	4 cut(s)	9, 82, 88, 147
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	3 cut(s)	126, 141, 313
Hpy188III	TCNNGA	2 cut(s)	119, 270
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	181, 205, 285, 318, 394
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	220, 377, 398, 422
Kpn2I	TCCGGA	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	33, 85, 132
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	84, 90
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	123
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	1 cut(s)	121
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	4 cut(s)	189, 262, 275, 306
MnlI	CCTC	3 cut(s)	112, 147, 349
MroI	TCCGGA	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	3 cut(s)	261, 290, 351
MslI	CAYNNNNRTG	2 cut(s)	22, 399
MspI	CCGG	3 cut(s)	20, 72, 119
MspR9I	CCNGG	1 cut(s)	21
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	220, 377, 398, 422
NmuCI	GTSAC	1 cut(s)	106
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	14, 152, 160
PkrI	GCNGC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	22, 399
SaqAI	TTAA	3 cut(s)	261, 290, 351
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	2 cut(s)	180, 203
SfaNI	GCATC	2 cut(s)	84, 90
SmiMI	CAYNNNNRTG	2 cut(s)	22, 399
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	184
Sse9I	AATT	4 cut(s)	189, 262, 275, 306
SsiI	CCGC	2 cut(s)	99, 346
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	253, 279
TasI	AATT	4 cut(s)	189, 262, 275, 306
TfiI	GAWTC	3 cut(s)	14, 152, 160
Tru1I	TTAA	3 cut(s)	261, 290, 351
Tru9I	TTAA	3 cut(s)	261, 290, 351
TscAI	CASTG	2 cut(s)	65, 388
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	106
TspGWI	ACGGA	2 cut(s)	47, 94
TspRI	CASTG	2 cut(s)	65, 388
XapI	RAATTY	2 cut(s)	275, 306
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.