Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016974

Physical Location & Seq

Genomic Coordinates Reverse (-)

23099693 .. 23100223

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0169700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTCTGTTCCGAGTTCACAAGGCCTCCCATTCCAGATCTACTTCTTCTTCTTCTTCTTCTGGACTTGGTTATGACGTCTTCCTGAGCTTTAGAGGTGAAGACACCCGAAAGAACTTCACTGATCACCTCTACACGGCCCTTGTCAACGCCCGATTTCGGACTTTCCGGGATGACCCTGAACTCGAGAGAGGGGAAAATATCAAGGAAAAGCTCGAGAATGCCATTCGACAGTCGCGGAGTTCTGTCATTGTGTTTTCGAAAGACTACACTTCTTCCAGATGGTGTCTGGACGAGCTTGTCATGATCCTTGAACTCAAGAGGACCTCCGATCACGTTGTGTTACCGGTCTTCTACGACGTCGATCCATCCCACGTGAGGAAGCAGGCAGAAACTCTTTCAAAGGTTCCTAAATACCAAGAAAATCAATCCTCGGAGAAGTTGAATGGATGGCGGGCAGCACTTCTAGAAGTTGCAGATCTAGCTGGAATGGTTTTACAAAATGAAGCCGACGGGTACGTCAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cytochrom_B561

Protein Analysis

176

Amino Acids

20.08

Weight (kDa)

6.52

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	25 - 168	9.2e-44	TIR domain
TIR_2	PF13676	27 - 124	2.7e-18	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323741 RchiOBHm_Chr1g0357131
rosa_laevigata	RLG00000003248
rosa_multiflora	Rmu_sc0001334.1_g000030
rosa_roxburghii	Rroxscaffold_4G00320240 Rroxscaffold_4G00320250 Rroxscaffold_4G00327940
rosa_rugosa	Rorug01G0169700 Rorug05G0363000 Rorug06G0062100
rosa_samantha	Rh2BG348400 Rh4CG074100 Rh4CG229200 Rh7CG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	299, 518
AatII	GACGTC	2 cut(s)	81, 363
AccII	CGCG	1 cut(s)	238
AciI	CCGC	2 cut(s)	238, 454
AclWI	GGATC	2 cut(s)	301, 359
AcvI	CACGTG	1 cut(s)	376
AcyI	GRCGYC	2 cut(s)	78, 360
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	136, 159, 378
AgeI	ACCGGT	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	314, 402, 445
AluBI	AGCT	4 cut(s)	90, 214, 298, 485
AluI	AGCT	4 cut(s)	90, 214, 298, 485
AlwI	GGATC	2 cut(s)	301, 359
Ama87I	CYCGRG	2 cut(s)	185, 215
AoxI	GGCC	2 cut(s)	24, 138
ApeKI	GCWGC	1 cut(s)	458
AsiGI	ACCGGT	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	139, 324
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	110, 119
AsuII	TTCGAA	1 cut(s)	260
AvaI	CYCGRG	2 cut(s)	185, 215
AvaII	GGWCC	1 cut(s)	324
BbrPI	CACGTG	1 cut(s)	376
BbsI	GAAGAC	3 cut(s)	73, 108, 343
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	3 cut(s)	276, 376, 444
BceAI	ACGGC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	170
BfaI	CTAG	2 cut(s)	467, 482
BglII	AGATCT	2 cut(s)	38, 478
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	2 cut(s)	185, 215
BmgT120I	GGNCC	2 cut(s)	139, 324
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	170
BpiI	GAAGAC	3 cut(s)	73, 108, 343
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	376
BsaHI	GRCGYC	2 cut(s)	78, 360
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 159, 378
Bse118I	RCCGGY	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	3 cut(s)	178, 368, 455
BseLI	CCNNNNNNNGG	3 cut(s)	136, 159, 378
BseMII	CTCAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	26, 140
BshTI	ACCGGT	1 cut(s)	346
BsiHKCI	CYCGRG	2 cut(s)	185, 215
BsiSI	CCGG	2 cut(s)	169, 347
BslI	CCNNNNNNNGG	3 cut(s)	136, 159, 378
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	26, 140
BsoBI	CYCGRG	2 cut(s)	185, 215
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	6 cut(s)	38, 124, 306, 331, 364, 478
BspACI	CCGC	2 cut(s)	238, 454
BspANI	GGCC	2 cut(s)	26, 140
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	301, 359
BspT104I	TTCGAA	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	346
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	6 cut(s)	38, 124, 306, 331, 364, 478
BssNI	GRCGYC	2 cut(s)	78, 360
Bst4CI	ACNGT	1 cut(s)	234
BstACI	GRCGYC	2 cut(s)	78, 360
BstBAI	YACGTR	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	387, 456
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	3 cut(s)	178, 368, 455
BstFNI	CGCG	1 cut(s)	238
BstKTI	GATC	6 cut(s)	41, 127, 309, 334, 367, 481
BstMBI	GATC	6 cut(s)	38, 124, 306, 331, 364, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	470
BstV2I	GAAGAC	3 cut(s)	73, 108, 343
BstX2I	RGATCY	2 cut(s)	38, 478
BstYI	RGATCY	2 cut(s)	38, 478
BsuRI	GGCC	2 cut(s)	26, 140
BtsCI	GGATG	3 cut(s)	178, 368, 455
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	387, 456
CciI	TCATGA	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	139, 324
Csp6I	GTAC	1 cut(s)	517
CspAI	ACCGGT	1 cut(s)	346
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	8 cut(s)	5, 26, 90, 140, 214, 298, 485, 509
CviKI_1	RGCY	8 cut(s)	5, 26, 90, 140, 214, 298, 485, 509
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	6 cut(s)	40, 126, 308, 333, 366, 480
DpnII	GATC	6 cut(s)	38, 124, 306, 331, 364, 478
DraIII	CACNNNGTG	1 cut(s)	340
DrdI	GACNNNNNNGTC	2 cut(s)	299, 518
DseDI	GACNNNNNNGTC	2 cut(s)	299, 518
Eco147I	AGGCCT	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	324
Eco72I	CACGTG	1 cut(s)	376
Eco88I	CYCGRG	2 cut(s)	185, 215
EcoO109I	RGGNCCY	1 cut(s)	324
FaeI	CATG	1 cut(s)	307
FaiI	YATR	2 cut(s)	75, 305
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	3 cut(s)	185, 355, 462
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	2 cut(s)	467, 482
GluI	GCNGC	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	26, 140
HapII	CCGG	2 cut(s)	169, 347
Hin1I	GRCGYC	2 cut(s)	78, 360
Hin1II	CATG	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	169, 347
HphI	GGTGA	2 cut(s)	110, 119
Hpy166II	GTNNAC	2 cut(s)	19, 148
Hpy188I	TCNGA	4 cut(s)	14, 162, 331, 436
Hpy8I	GTNNAC	2 cut(s)	19, 148
Hpy99I	CGWCG	3 cut(s)	362, 365, 515
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	5 cut(s)	78, 336, 360, 375, 519
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	5 cut(s)	78, 336, 360, 375, 519
Hsp92I	GRCGYC	2 cut(s)	78, 360
Hsp92II	CATG	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	6 cut(s)	38, 124, 306, 331, 364, 478
Lsp1109I	GCAGC	1 cut(s)	470
MaeI	CTAG	2 cut(s)	467, 482
MaeII	ACGT	5 cut(s)	78, 336, 360, 375, 519
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	6 cut(s)	40, 126, 308, 333, 366, 480
MboI	GATC	6 cut(s)	38, 124, 306, 331, 364, 478
MboII	GAAGA	9 cut(s)	39, 42, 45, 48, 51, 73, 113, 267, 343
MflI	RGATCY	2 cut(s)	38, 478
MluCI	AATT	1 cut(s)	523
MnlI	CCTC	8 cut(s)	37, 89, 140, 185, 315, 337, 372, 442
MseI	TTAA	1 cut(s)	529
MspI	CCGG	2 cut(s)	169, 347
MspR9I	CCNGG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	226
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	6 cut(s)	38, 124, 306, 331, 364, 478
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	408
NspV	TTCGAA	1 cut(s)	260
PaeR7I	CTCGAG	2 cut(s)	185, 215
PagI	TCATGA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	26
PctI	GAATGC	1 cut(s)	226
PfoI	TCCNGGA	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	460
PmaCI	CACGTG	1 cut(s)	376
PmlI	CACGTG	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	376
PpuMI	RGGWCCY	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	324
PspCI	CACGTG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	2 cut(s)	139, 324
PspPPI	RGGWCCY	1 cut(s)	324
PsuI	RGATCY	2 cut(s)	38, 478
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	529
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	6 cut(s)	38, 124, 306, 331, 364, 478
Sau96I	GGNCC	2 cut(s)	139, 324
ScrFI	CCNGG	1 cut(s)	170
Sfr274I	CTCGAG	2 cut(s)	185, 215
SfuI	TTCGAA	1 cut(s)	260
SinI	GGWCC	1 cut(s)	324
SlaI	CTCGAG	2 cut(s)	185, 215
SmlI	CTYRAG	3 cut(s)	185, 215, 317
SmoI	CTYRAG	3 cut(s)	185, 215, 317
Sse9I	AATT	1 cut(s)	523
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	238, 454
SspMI	CTAG	2 cut(s)	467, 482
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	5 cut(s)	81, 339, 363, 378, 522
TaqI	TCGA	5 cut(s)	186, 216, 229, 260, 363
TasI	AATT	1 cut(s)	523
Tru1I	TTAA	1 cut(s)	529
Tru9I	TTAA	1 cut(s)	529
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	324
XbaI	TCTAGA	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	2 cut(s)	185, 215
XspI	CTAG	2 cut(s)	467, 482
ZraI	GACGTC	2 cut(s)	79, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.