Rh7CG456600

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016974
Physical Location & Seq
Reverse (-)
60009570 .. 60009907
338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG456600.1

Sequence Viewer

Length: 222 bp
ATGGTGGTCGTGGAATCACTGGGATGGCTGACGGAATCGACTATAATGCCCAAGAAGCACCGCGCCATCGCCGGCATCGGCATCATCATCACCGCCGCCGTCACTCTTTCTCCGGATCTGAAATCTAAGCTTCCGAGTAGTACCGAATCACTGAATCGGTGCTCTGCAAGCAATTCCGAATTTCAAAGGTTTTTGAGGTTGGTAAACTTTCAGAGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

73

Amino Acids

8.06

Weight (kDa)

10.02

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 3 cut(s) 61, 93, 96
AclWI GGATC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 179
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 164
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 217
Aor13HI TCCGGA 1 cut(s) 112
ApoI RAATTY 1 cut(s) 179
AspLEI GCGC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 164
BccI CCATC 2 cut(s) 18, 74
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BfmI CTRYAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 84, 90
BmuI ACTGGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 112
BseGI GGATG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 2 cut(s) 72, 113
Bsp1286I GDGCHC 1 cut(s) 164
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 3 cut(s) 61, 93, 96
BspEI TCCGGA 1 cut(s) 112
BspFNI CGCG 1 cut(s) 63
BspPI GGATC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 73, 169
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 55, 168
BstSFI CTRYAG 1 cut(s) 218
BstUI CGCG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 17, 149
Cac8I GCNNGC 2 cut(s) 73, 169
CaiI CAGNNNCTG 1 cut(s) 217
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 71
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 3 cut(s) 28, 130, 217
CviKI_1 RGCY 3 cut(s) 28, 130, 217
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
FaiI YATR 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 96
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 96
HapII CCGG 2 cut(s) 72, 113
HhaI GCGC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 4 cut(s) 14, 35, 146, 154
HpaII CCGG 2 cut(s) 72, 113
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 4 cut(s) 120, 135, 178, 213
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 168
HpyF3I CTNAG 1 cut(s) 126
HspAI GCGC 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 112
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 5, 85, 126
LweI GCATC 2 cut(s) 84, 90
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 2 cut(s) 172, 179
MnlI CCTC 2 cut(s) 189, 207
MroI TCCGGA 1 cut(s) 112
MroNI GCCGGC 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 22
MspI CCGG 2 cut(s) 72, 113
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 55, 168
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 1 cut(s) 115
NgoMIV GCCGGC 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 4 cut(s) 14, 35, 146, 154
PkrI GCNGC 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 22
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 164
SetI ASST 3 cut(s) 132, 191, 200
SfaNI GCATC 2 cut(s) 84, 90
SfcI CTRYAG 1 cut(s) 218
SgeI CNNG 8 cut(s) 22, 32, 64, 74, 84, 125, 147, 180
SmiMI CAYNNNNRTG 1 cut(s) 22
Sse9I AATT 2 cut(s) 172, 179
SsiI CCGC 3 cut(s) 61, 93, 96
TaqI TCGA 1 cut(s) 38
TasI AATT 2 cut(s) 172, 179
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 4 cut(s) 14, 35, 146, 154
TscAI CASTG 2 cut(s) 24, 156
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 24, 156
XapI RAATTY 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.