Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016974

Physical Location & Seq

Genomic Coordinates Reverse (-)

46752809 .. 46754911

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTGGTCGTGGAATCACTGGGATGGCTGACGGAATCGACTATAATGCCCAAGAAGCACCGCGCCATCGCCGGCATCGGCATCATCATCACCGCCGCCGTCACTCTTTCTCCGGATCTGAAATCTAAGCCTCCGAGTAGTACCGAATCACTGAATCGGTGCTCTGCAAGCAATTCCGAATTTCAAAGGTTTTTGAGTTGTAGCCTGAGCTTAACAAAATCATATGAAAGAGCTGCTGTCAACAAGGCACGTGCCATAATTATACTGCCAAAAAAGGCAGATCGGTATGAAGTTGACACTGATGCCTTTCTATCAGTTCTGGCTATTCAACCTATTCTTAAGATCGAATCCGTCCCCTCTATTGTTGAGGCACCAACTATTGCAGCAGCAGCTTATTTGAGATTGGCTGTGCTTAAGATGCTAAGTGAAATTGGATCTGTTGAGAACATTCCAGAGTTCATTGAGGGTGTGAAGAGCAGGTATATATGCTTACAGCTAACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

168

Amino Acids

18.21

Weight (kDa)

8.79

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323741 RchiOBHm_Chr1g0357131
rosa_laevigata	RLG00000003248
rosa_multiflora	Rmu_sc0001334.1_g000030
rosa_roxburghii	Rroxscaffold_4G00320240 Rroxscaffold_4G00320250 Rroxscaffold_4G00327940
rosa_rugosa	Rorug01G0169700 Rorug05G0363000 Rorug06G0062100
rosa_samantha	Rh2BG348400 Rh4CG074100 Rh4CG229200 Rh7CG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	370
AccII	CGCG	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	112
AciI	CCGC	3 cut(s)	61, 93, 96
AclWI	GGATC	2 cut(s)	123, 442
AcsI	RAATTY	1 cut(s)	179
AcvI	CACGTG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	142
AflII	CTTAAG	2 cut(s)	338, 413
AgsI	TTSAA	2 cut(s)	185, 329
AluBI	AGCT	4 cut(s)	210, 233, 392, 496
AluI	AGCT	4 cut(s)	210, 233, 392, 496
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	123, 442
Aor13HI	TCCGGA	1 cut(s)	112
ApeKI	GCWGC	4 cut(s)	233, 383, 386, 389
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	370
BbrPI	CACGTG	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	220, 395, 398, 401
BccI	CCATC	2 cut(s)	18, 74
BceAI	ACGGC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BfrI	CTTAAG	2 cut(s)	338, 413
BfuAI	ACCTGC	1 cut(s)	468
BisI	GCNGC	5 cut(s)	96, 234, 384, 387, 390
BlsI	GCNGC	5 cut(s)	97, 235, 385, 388, 391
BmiI	GGNNCC	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	4 cut(s)	84, 90, 292, 408
BmuI	ACTGGG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	24, 505
BseAI	TCCGGA	1 cut(s)	112
BseGI	GGATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	24, 505
BseXI	GCAGC	4 cut(s)	220, 395, 398, 401
Bsh1236I	CGCG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	72, 113
BslFI	GGGAC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	115, 280, 342, 434
BspACI	CCGC	3 cut(s)	61, 93, 96
BspCNI	CTCAG	1 cut(s)	198
BspEI	TCCGGA	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	468
BspPI	GGATC	2 cut(s)	123, 442
BspQI	GCTCTTC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	370
BspTI	CTTAAG	2 cut(s)	338, 413
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	24, 505
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	4 cut(s)	115, 280, 342, 434
Bst6I	CTCTTC	1 cut(s)	467
BstAFI	CTTAAG	2 cut(s)	338, 413
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	73, 169
BstDEI	CTNAG	3 cut(s)	126, 206, 422
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	4 cut(s)	118, 283, 345, 437
BstMBI	GATC	4 cut(s)	115, 280, 342, 434
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 168, 389, 418
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	220, 395, 398, 401
BstX2I	RGATCY	2 cut(s)	115, 434
BstYI	RGATCY	2 cut(s)	115, 434
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	3 cut(s)	17, 149, 297
BveI	ACCTGC	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	73, 169
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	141
CviJI	RGCY	9 cut(s)	28, 130, 204, 210, 233, 323, 392, 407, 496
CviKI_1	RGCY	9 cut(s)	28, 130, 204, 210, 233, 323, 392, 407, 496
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	3 cut(s)	126, 206, 422
DpnI	GATC	4 cut(s)	117, 282, 344, 436
DpnII	GATC	4 cut(s)	115, 280, 342, 434
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco72I	CACGTG	1 cut(s)	251
FaiI	YATR	9 cut(s)	44, 223, 225, 257, 263, 288, 483, 485, 487
FaqI	GGGAC	1 cut(s)	338
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	96, 234, 384, 387, 390
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	5 cut(s)	96, 234, 384, 387, 390
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	5 cut(s)	96, 234, 384, 387, 390
HapII	CCGG	2 cut(s)	72, 113
HhaI	GCGC	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	2 cut(s)	241, 295
HindII	GTYRAC	2 cut(s)	241, 295
HinfI	GANTC	5 cut(s)	14, 35, 146, 154, 347
HpaII	CCGG	2 cut(s)	72, 113
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	241, 295
Hpy188I	TCNGA	3 cut(s)	120, 135, 178
Hpy188III	TCNNGA	2 cut(s)	113, 452
Hpy8I	GTNNAC	2 cut(s)	241, 295
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	167, 383
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 168, 389, 418
HpyF3I	CTNAG	3 cut(s)	126, 206, 422
HpySE526I	ACGT	1 cut(s)	250
HspAI	GCGC	1 cut(s)	63
Kpn2I	TCCGGA	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	115, 280, 342, 434
LguI	GCTCTTC	1 cut(s)	467
LpnPI	CCDG	8 cut(s)	5, 85, 126, 218, 305, 463, 465, 486
Lsp1109I	GCAGC	4 cut(s)	220, 395, 398, 401
LweI	GCATC	4 cut(s)	84, 90, 292, 408
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	4 cut(s)	117, 282, 344, 436
MboI	GATC	4 cut(s)	115, 280, 342, 434
MboII	GAAGA	1 cut(s)	484
MflI	RGATCY	2 cut(s)	115, 434
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	4 cut(s)	172, 179, 258, 429
MnlI	CCTC	4 cut(s)	141, 361, 367, 457
MroI	TCCGGA	1 cut(s)	112
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	4 cut(s)	212, 339, 414, 505
MslI	CAYNNNNRTG	1 cut(s)	22
MspCI	CTTAAG	2 cut(s)	338, 413
MspI	CCGG	2 cut(s)	72, 113
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	4 cut(s)	55, 168, 389, 418
NaeI	GCCGGC	1 cut(s)	73
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	4 cut(s)	115, 280, 342, 434
NgoMIV	GCCGGC	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	467
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	5 cut(s)	14, 35, 146, 154, 347
PkrI	GCNGC	5 cut(s)	97, 235, 385, 388, 391
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	115, 434
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	467
SaqAI	TTAA	4 cut(s)	212, 339, 414, 505
SatI	GCNGC	5 cut(s)	96, 234, 384, 387, 390
Sau3AI	GATC	4 cut(s)	115, 280, 342, 434
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	8 cut(s)	191, 212, 235, 253, 334, 394, 482, 498
SfaNI	GCATC	4 cut(s)	84, 90, 292, 408
SmiMI	CAYNNNNRTG	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	338, 413
SmoI	CTYRAG	2 cut(s)	338, 413
Sse9I	AATT	4 cut(s)	172, 179, 258, 429
SsiI	CCGC	3 cut(s)	61, 93, 96
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	38, 345
TasI	AATT	4 cut(s)	172, 179, 258, 429
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	5 cut(s)	14, 35, 146, 154, 347
Tru1I	TTAA	4 cut(s)	212, 339, 414, 505
Tru9I	TTAA	4 cut(s)	212, 339, 414, 505
TscAI	CASTG	3 cut(s)	24, 156, 304
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	4 cut(s)	233, 383, 386, 389
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	240, 303, 448
TspGWI	ACGGA	2 cut(s)	47, 340
TspRI	CASTG	3 cut(s)	24, 156, 304
Vha464I	CTTAAG	2 cut(s)	338, 413
XapI	RAATTY	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.