Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016974

Physical Location & Seq

Genomic Coordinates Reverse (-)

60821246 .. 60825036

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTGGTCGTGGAATCACCGGGATGGGCGACGGAGTTGACTATAATGCCCAAGAAACACTGCGTCATTGCCGGCATCGGCATCATCATCACCATCACCGCCTCCGTCACTCTTTCTCCGGATCTGAAATCCAAGCCTCCGAGTAGTACCGAATCCTTTGAATCGGTGCTCGCATCAATTACGAATTTCAAAGGTGAAGAGCGCCGTGCTCGCATTATTCGAGAACCGATAGGGAATATGCGATTGGACCAAATCATGCAAGACCCTTATGGCAATTATGTTATCCAAGCAGCACTCGGTCAATCAAAGGTCGATTGCATTTTCAACAATGTTGCTATGGATGAGCGGTTTAAGGAGGAAAGTGAATATTGTCATGGTGGCGGTGATGGATTGCATGGCTATGTTCCTTCACTTGACCATGTTGTTGCTGATACTTGTTGCCTTGAGGCTCTGCTTTCAACATACGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

157

Amino Acids

17.19

Weight (kDa)

4.91

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323741 RchiOBHm_Chr1g0357131
rosa_laevigata	RLG00000003248
rosa_multiflora	Rmu_sc0001334.1_g000030
rosa_roxburghii	Rroxscaffold_4G00320240 Rroxscaffold_4G00320250 Rroxscaffold_4G00327940
rosa_rugosa	Rorug01G0169700 Rorug05G0363000 Rorug06G0062100
rosa_samantha	Rh2BG348400 Rh4CG074100 Rh4CG229200 Rh7CG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	3 cut(s)	99, 346, 381
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	184
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	4 cut(s)	161, 190, 325, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Alw21I	GWGCWC	2 cut(s)	171, 211
AlwI	GGATC	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	5 cut(s)	9, 82, 88, 206, 395
AvaII	GGWCC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	171, 211
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	3 cut(s)	18, 101, 380
BceAI	ACGGC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	3 cut(s)	84, 90, 182
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse118I	RCCGGY	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	118
BseGI	GGATG	2 cut(s)	29, 346
BseMI	GCAATG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	171, 211
BsiSI	CCGG	3 cut(s)	20, 72, 119
Bsp1286I	GDGCHC	2 cut(s)	171, 211
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	3 cut(s)	99, 346, 381
BspEI	TCCGGA	1 cut(s)	118
BspPI	GGATC	1 cut(s)	129
BspQI	GCTCTTC	1 cut(s)	192
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	73, 171, 211
BstF5I	GGATG	2 cut(s)	29, 346
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	29, 346
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	3 cut(s)	73, 171, 211
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	4 cut(s)	256, 374, 395, 419
CviJI	RGCY	4 cut(s)	136, 399, 449, 469
CviKI_1	RGCY	4 cut(s)	136, 399, 449, 469
CviQI	GTAC	1 cut(s)	147
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	247
FaeI	CATG	4 cut(s)	259, 377, 398, 422
FatI	CATG	4 cut(s)	255, 373, 394, 418
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	36, 353
Fsp4HI	GCNGC	1 cut(s)	291
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	205
HapII	CCGG	3 cut(s)	20, 72, 119
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	259, 377, 398, 422
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	14, 152, 161
HpaII	CCGG	3 cut(s)	20, 72, 119
HphI	GGTGA	5 cut(s)	9, 82, 88, 206, 395
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	2 cut(s)	126, 141
Hpy188III	TCNNGA	2 cut(s)	119, 221
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	259, 318, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	259, 377, 398, 422
HspAI	GCGC	1 cut(s)	202
Kpn2I	TCCGGA	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	33, 85, 132
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	3 cut(s)	84, 90, 182
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	123
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	171, 211
MluCI	AATT	3 cut(s)	177, 184, 274
MnlI	CCTC	4 cut(s)	112, 147, 349, 439
MroI	TCCGGA	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	2 cut(s)	22, 399
MspI	CCGG	3 cut(s)	20, 72, 119
MspR9I	CCNGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	210
NaeI	GCCGGC	1 cut(s)	73
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	259, 377, 398, 422
NmuCI	GTSAC	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	14, 152, 161
PkrI	GCNGC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	22, 399
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	2 cut(s)	171, 211
SetI	ASST	3 cut(s)	196, 312, 471
SfaNI	GCATC	3 cut(s)	84, 90, 182
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	22, 399
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	177, 184, 274
SsiI	CCGC	3 cut(s)	99, 346, 381
SspI	AATATT	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	2 cut(s)	220, 312
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	3 cut(s)	177, 184, 274
TfiI	GAWTC	3 cut(s)	14, 152, 161
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	106
TspGWI	ACGGA	2 cut(s)	47, 94
TspRI	CASTG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.