Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016974

Physical Location & Seq

Genomic Coordinates Reverse (-)

48856647 .. 48862015

Gene Structure 5369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTGCTATATCCAGACAGCCATCTATAATTTTCACCGATGCGGTGCGCTATATTCCTAGAAACCTAGTTTTGGATTCATTTTTGGTAGGCACTAGCTTCCCCTATATGGTGGTCGTGGAATCACCGAGATGGGCGACGGAGTTGACTATAATGCCCAAGAAACACTGCGTCATTGCCGGCATCGGCATCATCATCACCATCACCGCCTCCGTCACTCTTTCTCCGGATCTGAAATCCAAGCCTCCGAGTAGTACCGAATCACCGAATCGGTGCTCGCATCAATTCGAATTTCAAAGGAACTATGTCGTGCAATTCGTCTTTGAGCTTCGGCTTCCGTGGGCGACAGTAGACATTCTTGAGCAGTTGGAGGGTAATTATGGGGATTTGTCCGTGCGAAGTATAGCAGTAATGTGGTTGAAAAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

8.64

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323741 RchiOBHm_Chr1g0357131
rosa_laevigata	RLG00000003248
rosa_multiflora	Rmu_sc0001334.1_g000030
rosa_roxburghii	Rroxscaffold_4G00320240 Rroxscaffold_4G00320250 Rroxscaffold_4G00327940
rosa_rugosa	Rorug01G0169700 Rorug05G0363000 Rorug06G0062100
rosa_samantha	Rh2BG348400 Rh4CG074100 Rh4CG229200 Rh7CG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	2 cut(s)	44, 207
AclWI	GGATC	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	73, 109
AgsI	TTSAA	2 cut(s)	296, 421
AluBI	AGCT	2 cut(s)	99, 328
AluI	AGCT	2 cut(s)	99, 328
Alw21I	GWGCWC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	5 cut(s)	28, 117, 190, 196, 255
AsuII	TTCGAA	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	278
BccI	CCATC	3 cut(s)	31, 126, 209
BfaI	CTAG	3 cut(s)	60, 68, 96
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmsI	GCATC	4 cut(s)	31, 192, 198, 289
Bpu14I	TTCGAA	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 109
Bse118I	RCCGGY	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	73, 109
BseMI	GCAATG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	180, 227
BslI	CCNNNNNNNGG	2 cut(s)	73, 109
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	2 cut(s)	44, 207
BspEI	TCCGGA	1 cut(s)	226
BspPI	GGATC	1 cut(s)	237
BspT104I	TTCGAA	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	181, 278
BstDSI	CCRYGG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	181, 278
CfoI	GCGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	179
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	255
CviJI	RGCY	7 cut(s)	5, 22, 99, 244, 328, 334, 428
CviKI_1	RGCY	7 cut(s)	5, 22, 99, 244, 328, 334, 428
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
FaiI	YATR	9 cut(s)	11, 29, 54, 108, 110, 152, 306, 381, 404
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	60, 68, 96
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	2 cut(s)	180, 227
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	4 cut(s)	77, 122, 260, 268
HpaII	CCGG	2 cut(s)	180, 227
HphI	GGTGA	5 cut(s)	28, 117, 190, 196, 255
Hpy166II	GTNNAC	2 cut(s)	147, 352
Hpy188I	TCNGA	2 cut(s)	234, 249
Hpy188III	TCNNGA	3 cut(s)	15, 227, 359
Hpy8I	GTNNAC	2 cut(s)	147, 352
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	1 cut(s)	313
HspAI	GCGC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	3 cut(s)	28, 193, 240
LweI	GCATC	4 cut(s)	31, 192, 198, 289
MaeI	CTAG	3 cut(s)	60, 68, 96
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	5 cut(s)	30, 284, 290, 314, 376
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	220, 255, 364
MroI	TCCGGA	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	130
MspI	CCGG	2 cut(s)	180, 227
NaeI	GCCGGC	1 cut(s)	181
NdeII	GATC	1 cut(s)	229
NgoMIV	GCCGGC	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	4 cut(s)	77, 122, 260, 268
PkrI	GCNGC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	130
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	3 cut(s)	69, 101, 330
SfaNI	GCATC	4 cut(s)	31, 192, 198, 289
SfuI	TTCGAA	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	5 cut(s)	30, 284, 290, 314, 376
SsiI	CCGC	2 cut(s)	44, 207
SspMI	CTAG	3 cut(s)	60, 68, 96
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	288
TasI	AATT	5 cut(s)	30, 284, 290, 314, 376
TfiI	GAWTC	4 cut(s)	77, 122, 260, 268
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	4 cut(s)	155, 202, 327, 382
TspRI	CASTG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	3 cut(s)	60, 68, 96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.