Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

OG0016974

Physical Location & Seq

Genomic Coordinates Forward (+)

196864 .. 197809

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atggtggtcgtggaattactgggatggctgacggagtcgactataatgcccaagaagcaccgcaccattgccggcatcggcatcatcatcaccgccaccgtcactctttctttggatctgaaatccaatcctccgagtagtaccgaatcactgaatcggtgctctgcaagcaattccgaatttcaaaggtatgaagttgacactgatgcctgtctatcagttctggttcttcaacctattcttaagatggaattcgtcccctctattgttgaggtatatcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

94

Amino Acids

10.37

Weight (kDa)

4.94

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323741 RchiOBHm_Chr1g0357131
rosa_laevigata	RLG00000003248
rosa_multiflora	Rmu_sc0001334.1_g000030
rosa_roxburghii	Rroxscaffold_4G00320240 Rroxscaffold_4G00320250 Rroxscaffold_4G00327940
rosa_rugosa	Rorug01G0169700 Rorug05G0363000 Rorug06G0062100
rosa_samantha	Rh2BG348400 Rh4CG074100 Rh4CG229200 Rh7CG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	2 cut(s)	61, 93
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	179, 251
AfaI	GTAC	1 cut(s)	142
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	185, 233
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	123
ApoI	RAATTY	2 cut(s)	179, 251
AsuHPI	GGTGA	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	164
BccI	CCATC	2 cut(s)	18, 241
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BfrI	CTTAAG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	3 cut(s)	84, 90, 196
BmuI	ACTGGG	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	2 cut(s)	61, 93
BspPI	GGATC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	71
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	73, 169
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 168
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	149, 201
Cac8I	GCNNGC	2 cut(s)	73, 169
Cfr10I	RCCGGY	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	141
CviJI	RGCY	1 cut(s)	28
CviKI_1	RGCY	1 cut(s)	28
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	251
FaiI	YATR	3 cut(s)	44, 192, 277
FaqI	GGGAC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	38
FokI	GGATG	1 cut(s)	36
HapII	CCGG	1 cut(s)	72
HincII	GTYRAC	2 cut(s)	39, 199
HindII	GTYRAC	2 cut(s)	39, 199
HinfI	GANTC	3 cut(s)	35, 146, 154
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	39, 199
Hpy188I	TCNGA	3 cut(s)	120, 135, 178
Hpy8I	GTNNAC	2 cut(s)	39, 199
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 168
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	5, 85, 209, 223
LweI	GCATC	3 cut(s)	84, 90, 196
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	4 cut(s)	14, 172, 179, 251
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	141, 265, 271
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	55, 168
NaeI	GCCGGC	1 cut(s)	73
NdeII	GATC	1 cut(s)	115
NgoMIV	GCCGGC	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	146, 154
PflFI	GACNNNGTC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	243
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	3 cut(s)	191, 238, 276
SfaNI	GCATC	3 cut(s)	84, 90, 196
SgeI	CNNG	8 cut(s)	22, 32, 64, 84, 147, 180, 222, 236
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	14, 172, 179, 251
SsiI	CCGC	2 cut(s)	61, 93
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	38
TasI	AATT	4 cut(s)	14, 172, 179, 251
TfiI	GAWTC	2 cut(s)	146, 154
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	156, 208
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	156, 208
Tth111I	GACNNNGTC	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	179, 251
XmiI	GTMKAC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.