Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016974

Physical Location & Seq

Genomic Coordinates Reverse (-)

46039966 .. 46042383

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003248

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACCACCCTGAACATAACCACCTCTCTTATTTCCTCTCTCAATCTCTCTATAGATACGGTGGTCGTGGAATCACTGGGATGGCTGACGGAGTCGACTATAATGCCCAAGAAGCACCGCGCCATCGCGGACATCGGCATCATCATCACCACCGCTGTCACTCTTTCTCCGGATCTGAAATCCAAGCCTCCGAGTAGTACCGAATCACTGAATCGGTATGAAGTTGACACTGATGCTTGTCTATCAGTTCTGGCTCTTCAACCTATTCTTAAGATGGAATCCGTCCCCTCTATTGTTGAGGTTTCAAGTTCGAAGACATGCAAGCTTTTGAAATCAATCTCAGAAAATGTGTTCAATCTTTGCAATTCTCCTAGTCTAGCAGGGCTGAAGTATAGTCAATTAGGACCTGGGTTTCAAGAGGTAATCAAATTCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Castor_Poll_mid

Protein Analysis

146

Amino Acids

15.63

Weight (kDa)

5.79

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016974)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323741 RchiOBHm_Chr1g0357131
rosa_laevigata	RLG00000003248
rosa_multiflora	Rmu_sc0001334.1_g000030
rosa_roxburghii	Rroxscaffold_4G00320240 Rroxscaffold_4G00320250 Rroxscaffold_4G00327940
rosa_rugosa	Rorug01G0169700 Rorug05G0363000 Rorug06G0062100
rosa_samantha	Rh2BG348400 Rh4CG074100 Rh4CG229200 Rh7CG456600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	2 cut(s)	120, 128
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	3 cut(s)	118, 128, 153
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	199
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	5 cut(s)	260, 306, 331, 355, 416
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
AlwI	GGATC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	404
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BbsI	GAAGAC	1 cut(s)	320
BccI	CCATC	3 cut(s)	75, 131, 268
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	1 cut(s)	408
BfaI	CTAG	2 cut(s)	372, 377
BfmI	CTRYAG	2 cut(s)	51, 434
BfrI	CTTAAG	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	408
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	2 cut(s)	147, 223
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	407
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bse1I	ACTGG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	407
BseGI	GGATG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	81
Bsh1236I	CGCG	2 cut(s)	120, 128
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	311
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	3 cut(s)	118, 128, 153
BspCNI	CTCAG	1 cut(s)	353
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	120, 128
BspPI	GGATC	1 cut(s)	180
BspQI	GCTCTTC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	311
BspTI	CTTAAG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	120, 128
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	2 cut(s)	51, 434
BstUI	CGCG	2 cut(s)	120, 128
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	3 cut(s)	74, 206, 228
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	5 cut(s)	85, 187, 254, 325, 385
CviKI_1	RGCY	5 cut(s)	85, 187, 254, 325, 385
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	321
FaiI	YATR	7 cut(s)	17, 53, 101, 219, 319, 393, 436
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	95
FokI	GGATG	1 cut(s)	93
FspBI	CTAG	2 cut(s)	372, 377
GlaI	GCGC	1 cut(s)	121
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	2 cut(s)	96, 226
HindII	GTYRAC	2 cut(s)	96, 226
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	5 cut(s)	71, 92, 203, 211, 278
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	96, 226
Hpy188I	TCNGA	3 cut(s)	177, 192, 343
Hpy188III	TCNNGA	2 cut(s)	170, 416
Hpy8I	GTNNAC	2 cut(s)	96, 226
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	321, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	340
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	1 cut(s)	120
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	261
LpnPI	CCDG	7 cut(s)	23, 62, 183, 236, 366, 393, 420
LweI	GCATC	2 cut(s)	147, 223
MaeI	CTAG	2 cut(s)	372, 377
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	248, 325
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	3 cut(s)	364, 398, 428
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	6 cut(s)	34, 46, 198, 292, 298, 412
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	79
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	2 cut(s)	120, 128
MwoI	GCNNNNNNNGC	1 cut(s)	112
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	321
NspV	TTCGAA	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	71, 203, 211, 278
PflFI	GACNNNGTC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	404
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	91
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	79
SalI	GTCGAC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	408
SetI	ASST	6 cut(s)	26, 265, 303, 327, 409, 423
SfaNI	GCATC	2 cut(s)	147, 223
SfcI	CTRYAG	2 cut(s)	51, 434
SfuI	TTCGAA	1 cut(s)	311
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	364, 398, 428
SsiI	CCGC	3 cut(s)	118, 128, 153
SspMI	CTAG	2 cut(s)	372, 377
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	2 cut(s)	95, 311
TasI	AATT	3 cut(s)	364, 398, 428
TfiI	GAWTC	4 cut(s)	71, 203, 211, 278
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	3 cut(s)	81, 213, 235
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	2 cut(s)	104, 271
TspRI	CASTG	3 cut(s)	81, 213, 235
Tth111I	GACNNNGTC	1 cut(s)	91
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	2 cut(s)	372, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.