RchiOBHm_Chr1g0367291
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017365
Physical Location & Seq
Forward (+)
57601032 .. 57603768
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59176

Sequence Viewer

Length: 1146 bp
ATGACTAGTGGTGGACTTCGCACAAGCGTGAAGGGTTACCTGATTGCACAACGCGTCACTGTAGCACAGGAAATAAACACAGTGCATGACGATGAGACGAGCATAAATGTAACTAGCAATTCCACTGCTGCTGATTCTGTGGATCATCCACCTCCACTTTCAGTTCCCGAGACTTCAGCTTCATACGGGCTCAGTATCTGTGACGGAAATATTCCTTGTTTCCCAATGTGGAGCTCTGCTGCAAAGAGCATGGCTTCATATGGTGCTGGAACCAAATCTAATAGTCTGCCTCACAATGTTCCTTCATCTCCTCAGTCAGAGGTTGAGATCCCTCAGACAGAGGTCGTGACCTTGCAGTCCTTCCATTTGAGGAGCTTCCACTTTAATGAGCTGAAAACAGCCACCACAAACTTCTGTCGACCTGATAGTATTATGGCTCAAGGTGGTCTTGGTTCTGTCTATAAGGGGTGGATTTATGAGCATTCGTTCACAGCTGGCGAGCCTGGTACCAGCATTGCCGTTGTAATAAAGAGGTTTAGCCAACAAAGGACCCTGCAGAGTCAGAAGGACTGGTTGACAGAAGCTAACTTCCTTGGACACTTGGAACACCCAAATCTGGTAAAACTGATTGGCTACTGCCTAAAGGATGGCATGCGGCTTCGGGTGCATGAATTTATCTCTCAAGGAAGCCTGAACATTCATCTATATGAAAGGGCTTCTCTCTATAAACGACTTTCATGGAACCAGCGTATGAAGATTGCCCTTGGTGCTGCCAAGGGTCTAGCATTTCTTCATAGTAATGAGGCAAAAGTGATTTATGGGGACTTTGAAACTTCCAATATCCTTCTTGATTCAGACTATAATGCCAAACTCTATGGTTATGGTTCGGCCATGGAAAGGCTTCAAGGTTATAGGAGCCATGTCTCAGAAGCGGACATGGCAATGTATGAGGACAGTGTCTTTCCTGCTGCTCACAGTGTGTTTGCAGCTCCTGAGACTTCTAATGATCACTTAACCCCGAAAAGTGATGTATACAGTTATGGGGTTGTTCTGCTCGAAATGTTATCTGGCAGAAGAGCTTTTGACAGTAGCAGGTCCCTTAGAGAAGAAACTTTACTTCAATTTGCGAAAAAGATTTCTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

381

Amino Acids

42.04

Weight (kDa)

6.39

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 145 - 361 2.1e-29 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 168 - 366 3.3e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 1083
Acc65I GGTACC 1 cut(s) 506
AccB1I GGYRCC 1 cut(s) 506
AccI GTMKAC 2 cut(s) 418, 1032
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 655, 932
AclWI GGATC 2 cut(s) 150, 322
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 1 cut(s) 671
AcuI CTGAAG 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 979
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 616, 897
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 3 cut(s) 830, 905, 1121
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 1 cut(s) 502
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 8 cut(s) 179, 234, 375, 391, 494, 584, 989, 1079
AluI AGCT 8 cut(s) 179, 234, 375, 391, 494, 584, 989, 1079
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 4 cut(s) 89, 164, 928, 989
AlwI GGATC 2 cut(s) 150, 322
AlwNI CAGNNNCTG 2 cut(s) 198, 992
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 1 cut(s) 888
ApeKI GCWGC 5 cut(s) 128, 239, 770, 968, 986
ApoI RAATTY 1 cut(s) 671
Asp700I GAANNNNTTC 1 cut(s) 900
Asp718I GGTACC 1 cut(s) 506
AspS9I GGNCC 2 cut(s) 549, 1095
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 549, 1095
BanI GGYRCC 1 cut(s) 506
BanII GRGCYC 2 cut(s) 192, 236
BarI GAAGNNNNNNTAC 2 cut(s) 1098, 1130
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 5 cut(s) 115, 226, 757, 955, 998
BccI CCATC 1 cut(s) 641
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 504
BclI TGATCA 1 cut(s) 1006
BcoDI GTCTC 4 cut(s) 89, 164, 928, 989
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 3 cut(s) 6, 114, 782
BfmI CTRYAG 2 cut(s) 60, 554
BfuAI ACCTGC 1 cut(s) 1083
BisI GCNGC 6 cut(s) 129, 240, 656, 771, 969, 987
BlsI GCNGC 6 cut(s) 130, 241, 657, 772, 970, 988
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 2 cut(s) 549, 1095
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 549, 1095
BmiI GGNNCC 6 cut(s) 271, 508, 551, 743, 917, 1097
BmrFI CCNGG 1 cut(s) 504
BoxI GACNNNNGTC 1 cut(s) 341
BpuEI CTTGAG 2 cut(s) 423, 666
BsaJI CCNNGG 4 cut(s) 592, 763, 774, 891
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 897
Bse1I ACTGG 1 cut(s) 575
Bse3DI GCAATG 2 cut(s) 513, 948
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 4 cut(s) 592, 763, 774, 891
BseGI GGATG 2 cut(s) 145, 652
BseLI CCNNNNNNNGG 2 cut(s) 616, 897
BseMI GCAATG 2 cut(s) 513, 948
BseMII CTCAG 5 cut(s) 205, 326, 347, 939, 984
BseNI ACTGG 1 cut(s) 575
BseRI GAGGAG 2 cut(s) 300, 385
BseXI GCAGC 5 cut(s) 115, 226, 757, 955, 998
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 890
BshNI GGYRCC 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 836, 1081
BslI CCNNNNNNNGG 2 cut(s) 616, 897
BsmAI GTCTC 4 cut(s) 89, 164, 928, 989
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 836, 1081
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 1 cut(s) 890
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 192, 236
Bsp143I GATC 3 cut(s) 142, 327, 1006
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 2 cut(s) 655, 932
BspANI GGCC 1 cut(s) 890
BspCNI CTCAG 5 cut(s) 204, 325, 346, 938, 985
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 6 cut(s) 271, 508, 551, 743, 917, 1097
BspMAI CTGCAG 1 cut(s) 558
BspMI ACCTGC 1 cut(s) 1083
BspPI GGATC 2 cut(s) 150, 322
BspQI GCTCTTC 1 cut(s) 1069
BspT107I GGYRCC 1 cut(s) 506
BsrDI GCAATG 2 cut(s) 513, 948
BsrI ACTGG 1 cut(s) 575
BssECI CCNNGG 4 cut(s) 592, 763, 774, 891
BssMI GATC 3 cut(s) 142, 327, 1006
BssNAI GTATAC 1 cut(s) 1033
BssT1I CCWWGG 4 cut(s) 592, 763, 774, 891
Bst1107I GTATAC 1 cut(s) 1033
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 6 cut(s) 61, 82, 956, 977, 1037, 1088
Bst6I CTCTTC 1 cut(s) 1069
BstC8I GCNNGC 3 cut(s) 496, 500, 653
BstDEI CTNAG 6 cut(s) 191, 312, 333, 925, 993, 1100
BstDSI CCRYGG 1 cut(s) 891
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 2 cut(s) 145, 652
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 3 cut(s) 145, 330, 1009
BstMAI GTCTC 4 cut(s) 89, 164, 928, 989
BstMBI GATC 3 cut(s) 142, 327, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 664, 767, 938
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 655
BstPAI GACNNNNGTC 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 2 cut(s) 60, 554
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 5 cut(s) 115, 226, 757, 955, 998
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BstZ17I GTATAC 1 cut(s) 1033
BsuRI GGCC 1 cut(s) 890
BtgI CCRYGG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 145, 652
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 5 cut(s) 57, 87, 123, 961, 982
BveI ACCTGC 1 cut(s) 1083
Cac8I GCNNGC 3 cut(s) 496, 500, 653
CaiI CAGNNNCTG 2 cut(s) 198, 992
Cfr13I GGNCC 2 cut(s) 549, 1095
CseI GACGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 507
CviAII CATG 8 cut(s) 86, 250, 652, 668, 738, 892, 920, 937
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 6 cut(s) 191, 312, 333, 925, 993, 1100
DpnI GATC 3 cut(s) 144, 329, 1008
DpnII GATC 3 cut(s) 142, 327, 1006
DraIII CACNNNGTG 1 cut(s) 979
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 1069
Ecl136II GAGCTC 1 cut(s) 234
Eco130I CCWWGG 4 cut(s) 592, 763, 774, 891
Eco24I GRGCYC 2 cut(s) 192, 236
Eco47I GGWCC 2 cut(s) 549, 1095
Eco53kI GAGCTC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 234
EcoO109I RGGNCCY 2 cut(s) 549, 1095
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 4 cut(s) 592, 763, 774, 891
EcoT38I GRGCYC 2 cut(s) 192, 236
ErhI CCWWGG 4 cut(s) 592, 763, 774, 891
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 8 cut(s) 89, 253, 655, 671, 741, 895, 923, 940
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 2 cut(s) 836, 1081
FatI CATG 8 cut(s) 85, 249, 651, 667, 737, 891, 919, 936
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 1006
FblI GTMKAC 2 cut(s) 418, 1032
Fnu4HI GCNGC 6 cut(s) 129, 240, 656, 771, 969, 987
FokI GGATG 2 cut(s) 132, 659
FriOI GRGCYC 2 cut(s) 192, 236
Fsp4HI GCNGC 6 cut(s) 129, 240, 656, 771, 969, 987
FspBI CTAG 3 cut(s) 6, 114, 782
GluI GCNGC 6 cut(s) 129, 240, 656, 771, 969, 987
HaeIII GGCC 1 cut(s) 890
HgaI GACGC 1 cut(s) 43
Hin1II CATG 8 cut(s) 89, 253, 655, 671, 741, 895, 923, 940
HincII GTYRAC 2 cut(s) 419, 576
HindII GTYRAC 2 cut(s) 419, 576
HinfI GANTC 3 cut(s) 134, 559, 851
Hpy166II GTNNAC 5 cut(s) 14, 419, 489, 576, 1033
Hpy188I TCNGA 5 cut(s) 319, 336, 564, 856, 928
Hpy188III TCNNGA 4 cut(s) 167, 346, 848, 992
Hpy8I GTNNAC 5 cut(s) 14, 419, 489, 576, 1033
HpyAV CCTTC 5 cut(s) 25, 312, 370, 559, 854
HpyCH4III ACNGT 6 cut(s) 61, 82, 956, 977, 1037, 1088
HpyCH4V TGCA 7 cut(s) 47, 85, 242, 355, 556, 667, 986
HpyF10VI GCNNNNNNNGC 3 cut(s) 664, 767, 938
HpyF3I CTNAG 6 cut(s) 191, 312, 333, 925, 993, 1100
Hsp92II CATG 8 cut(s) 89, 253, 655, 671, 741, 895, 923, 940
KpnI GGTACC 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 3 cut(s) 142, 327, 1006
LguI GCTCTTC 1 cut(s) 1069
LmnI GCTCC 4 cut(s) 231, 372, 915, 994
Lsp1109I GCAGC 5 cut(s) 115, 226, 757, 955, 998
MaeI CTAG 3 cut(s) 6, 114, 782
MaeIII GTNAC 5 cut(s) 35, 55, 109, 200, 346
MalI GATC 3 cut(s) 144, 329, 1008
MboI GATC 3 cut(s) 142, 327, 1006
MboII GAAGA 5 cut(s) 766, 782, 1086, 1118, 1131
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 192, 236
MluCI AATT 3 cut(s) 118, 671, 1121
MluI ACGCGT 1 cut(s) 52
MlyI GAGTC 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 900
MseI TTAA 2 cut(s) 384, 1013
MslI CAYNNNNRTG 6 cut(s) 26, 90, 384, 705, 798, 941
MspA1I CMGCKG 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 504
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 3 cut(s) 664, 767, 938
NcoI CCATGG 1 cut(s) 891
NdeI CATATG 1 cut(s) 259
NdeII GATC 3 cut(s) 142, 327, 1006
NlaIII CATG 8 cut(s) 89, 253, 655, 671, 741, 895, 923, 940
NlaIV GGNNCC 6 cut(s) 271, 508, 551, 743, 917, 1097
NmuCI GTSAC 3 cut(s) 55, 200, 346
NspI RCATGY 1 cut(s) 655
OliI CACNNNNGTG 1 cut(s) 26
PaeI GCATGC 1 cut(s) 655
PciSI GCTCTTC 1 cut(s) 1069
PctI GAATGC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 900
PfeI GAWTC 2 cut(s) 134, 851
PflFI GACNNNGTC 1 cut(s) 956
PkrI GCNGC 6 cut(s) 130, 241, 657, 772, 970, 988
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PpuMI RGGWCCY 2 cut(s) 549, 1095
PshAI GACNNNNGTC 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 236
Psp5II RGGWCCY 2 cut(s) 549, 1095
Psp6I CCWGG 1 cut(s) 502
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 6 cut(s) 271, 508, 551, 743, 917, 1097
PspPI GGNCC 2 cut(s) 549, 1095
PspPPI RGGWCCY 2 cut(s) 549, 1095
PstI CTGCAG 1 cut(s) 558
PstNI CAGNNNCTG 2 cut(s) 198, 992
PsuI RGATCY 1 cut(s) 327
PsyI GACNNNGTC 1 cut(s) 956
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
RseI CAYNNNNRTG 6 cut(s) 26, 90, 384, 705, 798, 941
SacI GAGCTC 1 cut(s) 236
SalI GTCGAC 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 1069
SaqAI TTAA 2 cut(s) 384, 1013
SatI GCNGC 6 cut(s) 129, 240, 656, 771, 969, 987
Sau3AI GATC 3 cut(s) 142, 327, 1006
Sau96I GGNCC 2 cut(s) 549, 1095
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 2 cut(s) 192, 236
SfcI CTRYAG 2 cut(s) 60, 554
SinI GGWCC 2 cut(s) 549, 1095
SmiMI CAYNNNNRTG 6 cut(s) 26, 90, 384, 705, 798, 941
SmlI CTYRAG 2 cut(s) 438, 681
SmoI CTYRAG 2 cut(s) 438, 681
SpeI ACTAGT 1 cut(s) 5
SphI GCATGC 1 cut(s) 655
Sse9I AATT 3 cut(s) 118, 671, 1121
SsiI CCGC 2 cut(s) 655, 932
SspI AATATT 1 cut(s) 211
SspMI CTAG 3 cut(s) 6, 114, 782
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 4 cut(s) 592, 763, 774, 891
TaaI ACNGT 6 cut(s) 61, 82, 956, 977, 1037, 1088
TaqI TCGA 2 cut(s) 418, 1056
TasI AATT 3 cut(s) 118, 671, 1121
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 2 cut(s) 134, 851
Tru1I TTAA 2 cut(s) 384, 1013
Tru9I TTAA 2 cut(s) 384, 1013
TscAI CASTG 5 cut(s) 64, 87, 130, 961, 982
TseFI GTSAC 3 cut(s) 55, 200, 346
TseI GCWGC 5 cut(s) 128, 239, 770, 968, 986
Tsp45I GTSAC 3 cut(s) 55, 200, 346
TspDTI ATGAA 9 cut(s) 171, 246, 294, 684, 689, 723, 726, 767, 782
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 5 cut(s) 64, 87, 130, 961, 982
Tth111I GACNNNGTC 1 cut(s) 956
VpaK11BI GGWCC 2 cut(s) 549, 1095
XapI RAATTY 1 cut(s) 671
XceI RCATGY 1 cut(s) 655
XmiI GTMKAC 2 cut(s) 418, 1032
XmnI GAANNNNTTC 1 cut(s) 900
XspI CTAG 3 cut(s) 6, 114, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.